Copyedit on Appendix A

This commit makes many small wording fixes, mainly to Appendix A.

It also insert "quotes" around some of the titles fields in
'tex/src/references.tex', since otherwise capitalisation is lost (DNA
becomes Dna; 'of Reinhart and Rogoff' becomes 'of reinhart and rogoff'; and
so on). I didn't do this for all titles, because some Have All Words
Capitalised, which blocks the .bib file from choosing a consistent style.

1 files changed, 34 insertions, 34 deletions

diff --git a/tex/src/references.tex b/tex/src/references.tex
index 027fcc8..c8b7e0d 100644
--- a/tex/src/references.tex
+++ b/tex/src/references.tex
@@ -56,7 +56,7 @@ archivePrefix = {arXiv},
 
 @ARTICLE{aissi20,
      author = {Dylan A\"issi},
-      title = {Review for Towards Long-term and Archivable Reproducibility},
+      title = "{Review for Towards Long-term and Archivable Reproducibility}",
        year = {2020},
     journal = {Authorea},
      volume = {n/a},
@@ -116,7 +116,7 @@ archivePrefix = {arXiv},
 
 @ARTICLE{nust20,
      author = {Daniel N\"ust and Vanessa Sochat and Ben Marwick and Stephen J. Eglen and Tim Head and Tony Hirst and Benjamin D. Evans},
-      title = {Ten simple rules for writing Dockerfiles for reproducible data science},
+      title = "{Ten simple rules for writing Dockerfiles for reproducible data science}",
        year = {2020},
     journal = {PLOS Computational Biology},
      volume = {16},
@@ -171,7 +171,7 @@ archivePrefix = {arXiv},
 
 @ARTICLE{gibney20,
      author = {Elizabeth Gibney},
-      title = {This AI researcher is trying to ward off a reproducibility crisis},
+      title = "{This AI researcher is trying to ward off a reproducibility crisis}",
        year = {2020},
     journal = {Nature},
      volume = {577},
@@ -226,7 +226,7 @@ archivePrefix = {arXiv},
 
 @ARTICLE{miksa19a,
      author = {Tomasz Miksa and Paul Walk and Peter Neish},
-      title = {RDA DMP Common Standard for Machine-actionable Data Management Plans},
+      title = "{RDA DMP Common Standard for Machine-actionable Data Management Plans}",
        year = {2019},
     journal = {RDA},
       pages = {doi:10.15497/rda00039},
@@ -689,16 +689,16 @@ archivePrefix = {arXiv},
 
 
 @article{stodden18,
-	author = {{Stodden}, V. and {Seiler}, J. and {Ma}, Z.},
-	title = {An empirical analysis of journal policy effectiveness for computational reproducibility},
-	volume = {115},
-	number = {11},
-	pages = {2584},
-	year = {2018},
-	doi = {10.1073/pnas.1708290115},
-	issn = {0027-8424},
-	URL = {https://www.pnas.org/content/115/11/2584},
-	journal = {Proceedings of the National Academy of Sciences}
+        author = {{Stodden}, V. and {Seiler}, J. and {Ma}, Z.},
+        title = {An empirical analysis of journal policy effectiveness for computational reproducibility},
+        volume = {115},
+        number = {11},
+        pages = {2584},
+        year = {2018},
+        doi = {10.1073/pnas.1708290115},
+        issn = {0027-8424},
+        URL = {https://www.pnas.org/content/115/11/2584},
+        journal = {Proceedings of the National Academy of Sciences}
 }
 
 
@@ -706,17 +706,17 @@ archivePrefix = {arXiv},
 
 
 @article {fanelli18,
-	author = {{Fanelli}, D.},
-	title = {Opinion: Is science really facing a reproducibility crisis, and do we need it to?},
-	volume = {115},
-	number = {11},
-	pages = {2628},
-	year = {2018},
-	doi = {10.1073/pnas.1708272114},
-	publisher = {National Academy of Sciences},
-	issn = {0027-8424},
-	URL = {https://www.pnas.org/content/115/11/2628},
-	journal = {Proceedings of the National Academy of Sciences}
+        author = {{Fanelli}, D.},
+        title = {Opinion: Is science really facing a reproducibility crisis, and do we need it to?},
+        volume = {115},
+        number = {11},
+        pages = {2628},
+        year = {2018},
+        doi = {10.1073/pnas.1708272114},
+        publisher = {National Academy of Sciences},
+        issn = {0027-8424},
+        URL = {https://www.pnas.org/content/115/11/2628},
+        journal = {Proceedings of the National Academy of Sciences}
 }
 
 
@@ -1090,7 +1090,7 @@ archivePrefix = {arXiv},
 
 @ARTICLE{horvath15,
      author = {Steve Horvath},
-      title = {Erratum to: DNA methylation age of human tissues and cell types},
+      title = "{Erratum to: DNA methylation age of human tissues and cell types}",
     journal = {Genome Biology},
      volume = {16},
       pages = {96},
@@ -1131,7 +1131,7 @@ archivePrefix = {arXiv},
 
 @ARTICLE{clarkso15,
      author = "Chris Clarkson and Mike Smith and Ben Marwick and Richard Fullagar and Lynley A. Wallis and Patrick Faulkner and Tiina Manne and Elspeth Hayes and Richard G. Roberts and Zenobia Jacobs and Xavier Carah and Kelsey M. Lowe and Jacqueline Matthews and S. Anna Florin",
-      title = {The archaeology, chronology and stratigraphy of Madjedbebe (Malakunanja II): A site in northern Australia with early occupation},
+      title = "{The archaeology, chronology and stratigraphy of Madjedbebe (Malakunanja II): A site in northern Australia with early occupation}",
     journal = {Journal of Human Evolution},
        year = 2015,
      volume = 83,
@@ -1323,7 +1323,7 @@ archivePrefix = {arXiv},
 
 @ARTICLE{herndon14,
      author = {Thomas Herndon and Michael Ash and Robert Pollin},
-      title = {Does high public debt consistently stifle economic growth? A critique of Reinhart and Rogoff},
+      title = "{Does high public debt consistently stifle economic growth? A critique of Reinhart and Rogoff}",
     journal = {Cambridge Journal of Economics},
        year = {2014},
       month = {dec},
@@ -1410,7 +1410,7 @@ archivePrefix = {arXiv},
 
 @ARTICLE{gronenschild12,
      author = {Ed H. B. M. Gronenschild and Petra Habets and Heidi I. L. Jacobs and Ron Mengelers and Nico Rozendaal and Jim van Os and Machteld Marcelis},
-      title = {The Effects of FreeSurfer Version, Workstation Type, and Macintosh Operating System Version on Anatomical Volume and Cortical Thickness Measurements},
+      title = "{The Effects of FreeSurfer Version, Workstation Type, and Macintosh Operating System Version on Anatomical Volume and Cortical Thickness Measurements}",
     journal = {PLoS ONE},
      volume = {7},
        year = {2012},
@@ -1797,7 +1797,7 @@ Reproducible Research in Image Processing},
 
 @ARTICLE{ludascher05,
      author = {Ludäs\-cher, Bertram and Altintas, Ilkay and Berkley, Chad and Higgins, Dan and Jaeger, Efrat and Jones, Matthew and Lee, Edward A. and Tao, Jing and Zhao, Yang},
-      title = {Scientific workflow management and the Kepler system},
+      title = "{Scientific workflow management and the Kepler system}",
     journal = {Concurrency Computation: Practice and Experiment},
        year = {2006},
      volume = {18},
@@ -1825,7 +1825,7 @@ Reproducible Research in Image Processing},
 
 @ARTICLE{bavoil05,
      author = {Louis Bavoil and Steven P. Callahan and Patricia J. Crossno and Juliana Freire and Carlos E. Scheidegger and Cláudio T. Silva and Huy T. Vo},
-      title = {VisTrails: Enabling Interactive Multiple-View Visualizations},
+      title = "{VisTrails: Enabling Interactive Multiple-View Visualizations}",
     journal = {VIS 05. IEEE Visualization},
        year = {2005},
      volume = {},
@@ -1880,7 +1880,7 @@ Reproducible Research in Image Processing},
 
 @ARTICLE{buckheit1995,
      author = {Jonathan B. Buckheit and David L. Donoho},
-      title = {WaveLab and Reproducible Research},
+      title = "{WaveLab and Reproducible Research}",
     journal = {Wavelets and Statistics},
        year = {1995},
      volume = {1},
@@ -1908,7 +1908,7 @@ Reproducible Research in Image Processing},
 
 @ARTICLE{eker03,
      author = {Johan Eker and Jorn W Janneck and Edward A. Lee and Jie Liu and Xiaojun Liu and Jozsef Ludvig and Sonia Sachs and Yuhong Xiong and Stephen Neuendorffer},
-      title = {Taming heterogeneity - the Ptolemy approach},
+      title = "{Taming heterogeneity - the Ptolemy approach}",
     journal = {Proceedings of the IEEE},
        year = {2003},
      volume = {91},
@@ -1974,7 +1974,7 @@ Reproducible Research in Image Processing},
 
 @ARTICLE{mcilroy78,
      author = {M. D. McIlroy and E. N. Pinson and B. A. Tague},
-      title = {UNIX Time-Sharing System: Forward},
+      title = "{UNIX Time-Sharing System: Forward}",
     journal = {\doihref{https://archive.org/details/bstj57-6-1899/mode/2up}{Bell System Technical Journal}},
        year = {1978},
      volume = {57},