Appendix of long paper added, optionally we can disable it

Given the referee reports, after discussing with the editors of CiSE, we
decided that it is important to include the complete appendix we had before
that included a thorough review of existing tools and methods. However, the
appendix will not be published in the paper (due to the strict word-count
limit). It will only be used in the arXiv/Zenodo versions of the paper.

This actually created a technical problem: we want the commit hash of the
project source to remain the same when the paper is built with an appendix
or without it.

To fix this problem the choice of including an appendix has gone into the
'project' script as a run-time option called '--no-appendix'. So by default
(when someone just runs './project make'), the PDF will have an appendix,
but when we want to submit to the journal, or when the appendix isn't
needed for a certain reason, we can use this new option. The appendix also
has its own separate bibliography.

Some other corrections made in this commit:
 1. Some new references were added that had an '_' in their source, they
    were corrected in 'references.tex'.
 2. I noticed that 'preamble-style.tex' is not actually used in this paper,
    so it has been deleted.

1 files changed, 5 insertions, 5 deletions

diff --git a/tex/src/references.tex b/tex/src/references.tex
index 3d395ec..992f40f 100644
--- a/tex/src/references.tex
+++ b/tex/src/references.tex
@@ -171,7 +171,7 @@ archivePrefix = {arXiv},
      author = {Roberto {Di Cosmo} and Francois Pellegrini},
       title = {Encouraging a wider usage of software derived from research},
        year = {2019},
-    journal = {\doihref{https://www.ouvrirlascience.fr/wp-content/uploads/2020/02/Opportunity-Note_software-derived-from-research_EN.pdf}{Ouvrir la science}},
+    journal = {\doihref{https://www.ouvrirlascience.fr/wp-content/uploads/2020/02/Opportunity-Note\_software-derived-from-research\_EN.pdf}{Ouvrir la science}},
      volume = {},
       pages = {},
         doi = {},
@@ -1031,7 +1031,7 @@ archivePrefix = {arXiv},
 archivePrefix = {arXiv},
        eprint = {1506.02822},
  primaryClass = {cs.DC},
-          doi = {10.1007/978-3-319-27308-2_47},
+          doi = {10.1007/978-3-319-27308-2\_47},
        adsurl = {https://ui.adsabs.harvard.edu/abs/2015arXiv150602822C},
       adsnote = {Provided by the SAO/NASA Astrophysics Data System}
 }
@@ -1203,7 +1203,7 @@ archivePrefix = {arXiv},
     journal = {Provenance and Annotation of Data and Processes (IPAW)},
        year = {2012},
       pages = {203},
-        doi = {10.1007/978-3-642-34222-6_16},
+        doi = {10.1007/978-3-642-34222-6\_16},
 }
 
 
@@ -1307,7 +1307,7 @@ Reproducible Research in Image Processing},
 
 
 @ARTICLE{nowakowski11,
-     author = {Piotr Nowakowski and Eryk Ciepiela and Daniel Har\k{e}\.{z}lak and Joanna Kocot and Marek Kasztelnik and Tomasz Barty\'nski and Jan Meizner and Grzegorz Dyk and Maciej Malawski},
+     author = {Piotr Nowakowski and Eryk Ciepiela and Daniel Hare\.{z}lak and Joanna Kocot and Marek Kasztelnik and Tomasz Barty\'nski and Jan Meizner and Grzegorz Dyk and Maciej Malawski},
       title = {The Collage Authoring Environment},
     journal = {Procedia Computer Science},
      volume = {4},
@@ -1618,7 +1618,7 @@ Reproducible Research in Image Processing},
     journal = {Large Installation System Administration Conference},
        year = {2004},
      volume = {18},
-      pages = {79. \url{https://www.usenix.org/legacy/events/lisa04/tech/full_papers/dolstra/dolstra.pdf}},
+      pages = {79. \url{https://www.usenix.org/legacy/events/lisa04/tech/full\_papers/dolstra/dolstra.pdf}},
 }