Imported recent updates in Maneage, conflicts fixed

Until now, Maneage had undergone some updates.

With this commit, those updates have been imported and the conflicts that
resulted were fixed. They were all cosmetic and had no effect on the
analysis. The most significant one was about the change in the format of
'INPUTS.conf'.

In the process, I also noticed that the IEEEtran LaTeX package is now
called 'ieeetran' (the 'tlmgr' of TeXLive 2022 was failing).

1 files changed, 181 insertions, 0 deletions

diff --git a/reproduce/software/shell/tarball-prepare.sh b/reproduce/software/shell/tarball-prepare.sh
new file mode 100755
index 0000000..ccc9318
--- /dev/null
+++ b/reproduce/software/shell/tarball-prepare.sh
@@ -0,0 +1,181 @@
+#!/bin/bash
+
+# Script to convert all files (tarballs in any format; just recognized
+# by 'tar') within an 'odir' to a unified '.tar.lz' format.
+#
+# The inputs are assumed to be formatted with 'NAME_VERSION', and only for
+# the names, we are currently assuming '.tar.*' (for the 'sed'
+# command). Please modify/generalize accordingly.
+#
+# It will unpack the source in a certain empty directory with the
+# 'tmpunpack' suffix, and rename the top directory to the requested format
+# of NAME-VERSION also. So irrespective of the name of the top original
+# tarball directory, the resulting tarball's top directory will have a name
+# formatting of NAME-VERSION.
+#
+# Discussion: https://savannah.nongnu.org/task/?15699
+#
+# Copyright (C) 2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2022 Pedram Ashofteh Ardakani <pedramardakani@pm.me>
+# Released under GNU GPLv3+
+
+# Abort the script in case of an error.
+set -e
+
+
+
+
+
+# Default arguments
+odir=
+idir=
+quiet=
+basedir=$PWD
+
+
+# The --help output
+print_help() {
+    cat <<EOF
+Usage: $0 [OPTIONS]
+
+Low-level script to create maneage-standard tarballs.
+
+  -o, --output-dir         Target directory to write the packed tarballs.
+                           Current: $odir
+
+
+  -i, --input-dir          Directory containing original tarballs.
+                           Current: $idir
+
+  -q, --quiet              Suppress logging information. Only print the
+                           final packed file and its sha512sum.
+
+Maneage URL: https://maneage.org
+
+Report bugs: https://savannah.nongnu.org/bugs/?group=reproduce
+EOF
+}
+
+
+
+
+# Parse the arguments
+while [ $# -gt 0 ]
+do
+  case $1 in
+      -q|--quiet)      quiet=1; shift;;
+      -h|--help|-'?')  print_help; exit 0;;
+      -i|--input-dir)
+          # Remove the trailing '/' introduced by autocomplete
+          idir=$(echo "$2" | sed 's|/$||');
+          shift;  # past argument
+          shift;; # past value
+      -o|--output-dir)
+          # Remove the trailing '/' introduced by autocomplete
+          odir=$(echo "$2" | sed 's|/$||');
+          shift;  # past argument
+          shift;; # past value
+      *)  echo "$0: unknown option '$1'"; exit 1;;
+  esac
+done
+
+
+
+
+# Extract the 'absolute path' to input and output directories. Working with
+# relative path is a great source of confusion and unwanted side-effects
+# like moving/removing files by accident.
+if [ ! -d "$idir" ]; then
+    echo "$0: please pass the input directory (option --input-dir or -i)."
+    exit 1
+else
+    idir=$(realpath $idir)
+fi
+
+if [ ! -d "$odir" ]; then
+    echo "$0: please pass the output directory (option --output-dir or -o)."
+    exit 1
+else
+    odir=$(realpath $odir)
+fi
+
+
+
+
+
+# Unpack and pack all files in the '$idir'
+# ----------------------------------------
+allfiles=$(ls $idir | sort)
+
+# Let user know number of tarballs if its not in quiet mode
+if [ -z $quiet ]; then
+    nfiles=$(ls $idir | wc -l)
+    echo "Found $nfiles file(s) in '$idir/'"
+fi
+
+# Process all files
+for f in $allfiles; do
+
+    # Seperate name and version number
+    name=$(echo $f | sed -e 's/.tar.*//' | \
+                     awk 'BEGIN { FS = "[-_ ]" } {print $1 "-" $2}')
+
+    # Skip previously packed files
+    if [ -f $odir/$name.tar.lz ]; then
+
+        # Print the info message if not in quiet mode
+        if [ -z $quiet ]; then
+            echo "$0: skipping '$odir/$name.tar.lz'"
+        fi
+
+        # skip this file
+        continue
+    else
+
+        # Print the info message if not in quiet mode
+        if [ -z $quiet ]; then
+            echo "$0: processing '$idir/$f'"
+        fi
+    fi
+
+    # Create a temporary directory name
+    tmpdir=$odir/$name-tmpunpack
+
+    # If the temporary directory exists, mkdir will throw an error. The
+    # developer needs to intervene manually to fix the issue.
+    mkdir $tmpdir
+
+
+
+
+
+    # Move into the temporary directory
+    # ---------------------------------
+    #
+    # The default output directory for all the following commands: $tmpdir
+    cd $tmpdir
+
+    # Unpack
+    tar -xf $idir/$f
+
+    # Make sure the unpacked tarball is contained within a directory with
+    # the clean program name
+    if [ ! -d "$name" ]; then
+        mv * $name/
+    fi
+
+    # Pack with recommended options
+    tar -c -Hustar --owner=root --group=root \
+        -f $name.tar $name/
+    lzip -9 $name.tar
+
+    # Move the compressed file from the temporary directory to the target
+    # output directory
+    mv $name.tar.lz $odir/
+
+    # Print the sha512sum along with the filename for a quick reference
+    echo $(sha512sum $odir/$name.tar.lz)
+
+    # Clean up the temporary directory
+    rm -r $tmpdir
+done