diff options
author | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2020-08-17 00:28:08 +0100 |
---|---|---|
committer | Mohammad Akhlaghi <mohammad@akhlaghi.org> | 2020-08-20 02:00:32 +0100 |
commit | 3480a74b077f599389fd54a453791a0373568171 (patch) | |
tree | 76e472534d729301ad480e3777c91a7c24a5d331 /reproduce/software/config | |
parent | b79c430c82b6c3a40817caac13bf8665cfa9c6a3 (diff) | |
parent | 9573d4e4d4754e629b73be4bd6846a049d57f427 (diff) |
Imported recent updates in Maneage, minor conflicts fixed
Some very minor conflicts came up and were easily corrected. They were
mostly in parts that are also shared with the demonstration in the core
Maneage branch.
Diffstat (limited to 'reproduce/software/config')
-rw-r--r-- | reproduce/software/config/checksums.conf | 80 | ||||
-rw-r--r-- | reproduce/software/config/urls.conf | 31 | ||||
-rw-r--r-- | reproduce/software/config/versions.conf | 85 |
3 files changed, 100 insertions, 96 deletions
diff --git a/reproduce/software/config/checksums.conf b/reproduce/software/config/checksums.conf index 62af1e1..b516a61 100644 --- a/reproduce/software/config/checksums.conf +++ b/reproduce/software/config/checksums.conf @@ -14,26 +14,26 @@ # Basic/low-level programs and libraires (installed in any case) # -------------------------------------------------------------- -bash-checksum = a93f221fe800908e335584837f63d02a350d9c8b2711f1923e946980b960fb2d4a21e4321f722c70e5faf5554991a6b9ef6722d214a1921f71030896cf134639 -binutils-checksum = a5e1f77e985d7d66e3ec6ed62a51a61c82ed0964a5108a1f318bf717f3f2af4dcd018ec3a66c10d6dc7525bad801b118f468eca07b2502c836895f4091bbeed4 +bash-checksum = e210cd63ce1241636fbb14d1a105c83e9481a0312026f746f76f7115b777707170ddfe1840fb4d3a4093613048e2d1eedf926e843ad15ffc8d66f08525e8b04b +binutils-checksum = 5ad795fab0803be83b53aa955fd5414c8408b4cf2a66eba2f8688298312934b4b1b0cbe9cf887d86de77f88adf1333d85fc9f6ab4a530e85a09b9b2dbf6aaf3f bzip2-checksum = 00ace5438cfa0c577e5f578d8a808613187eff5217c35164ffe044fbafdfec9e98f4192c02a7d67e01e5a5ccced630583ad1003c37697219b0f147343a3fdd12 cert-checksum = a81dfa59c70788126a395c576e54cb8f61c1ea34da69b5cd42e2d83ee6426c2a26941360c7302793774ea98ca16846deb6e683144cc7fb6da6ef87b70447e4c8 -coreutils-checksum = ef8941dae845bbf5ae5838bc49e44554a766302930601aada6fa594e8088f0fbad74e481ee392ff89633e68b99e4da3f761fcb5d31ee3b233d540fe2a2d4e1af -curl-checksum = df8fc6b2cccf100f7479e25cad743964a84066b587da19585b36a788b0041925e33944986d636a451d6bb95a452d5ac6812b2d5fa6631a10e0ac82a2c7821c75 +coreutils-checksum = 1c8f3584efd61b4b02e7ac5db8e103b63cfb2063432caaf1e64cb2dcc56d8c657d1133bbf10bd41468d6a1f31142e6caa81d16ae68fa3e6e84075c253613a145 +curl-checksum = 614f8d67e6ee942cb5e57f2da1a3faaf84ebff549ffe383aaf3751a4de3c8874ff482076afa27a52e910a137dec9b0f6e98265dc7d4ad7c95845b63f39236fd4 dash-checksum = 9d55090115ac04f505d70e6790179331178950f96fe713b33fd698fa8bfa60d4eff1b68cb7b8a2f099d29c587d36034a17dccd6658ba1623ff0a625ac1fb9620 diffutils-checksum = 7b12cf8aea1b9844773748f72272d9c6a38adae9c3c3a8c62048f91fb56c60b76035fa5f51665dceaf2cfbf1d1f4a3efdcc24bf47a5a16ff4350543314b12c9c -file-checksum = 3ec5e51ffb7a82defa74845a90fbc983f6e169fc116606049bc01ff6e720d340c8abf6eb7a08b9ac1099162a5c02deac3633b07b039d486344c8abd9052ca751 +file-checksum = 9cf1a7b769c56eb6f5b25c66ce85fa1300128396e445b2e53dbbd8951e5da973a7a07c4ef9f7ebd1fe945d47bdaf2cd9ef09bd2be6c217a0bcb907d9449835e6 findutils-checksum = 650a24507f8f4ebff83ad28dd27daa4785b4038dcaadc4fe00823b976e848527074cce3f9ec34065b7f037436d2aa6e9ec099bc05d7472c29864ac2c69de7f2e flock-checksum = ddb997174c0653bc3d29410a5a16b6290e737aa40fbf4b746e2d1db1e88e5acb08ec11a25c27c8a5a5fbf5a00fcac17abeaa245e7df27bd975ae86364d400b86 -gawk-checksum = 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python-dateutil-checksum = ec7da86203572582f883a4686acf8a732a2de4f396d809057eb51b2c60dbca5623a7fa90c2c0618c281a2282c60841739bd837731a51cc876f4ff369297f2f81 pyyaml-checksum = 8f27f92bdfa310a99dd6d83947332cc033fa18f0011998bb585ad5c4340a2da20d8c20bfdb53beaae15651198d1240c986818379b0a05b230f74d1f30f53e7fd requests-checksum = 385e1d80993a21c09e7c4682500ca8c24155962ba41ecd8e73612722b2ff6618b736e827fc48ad1683b0d2bc7a420cfe680f5107860aca52656ef777f1d60104 -scipy-checksum = 672915da782f5a439a3920ad1a200937b8415aeb4f1db2451cf0b5a90ba6e18c69e17e9ff8433f6a7760bbef2434d7b0f6447319faec9bb96fa6841794bfa538 +scipy-checksum = 45463df30a0f6270d9f4cf52235f31607904a6ae1375e12600e7f1ab2d27b1dc25a6211b49dceb71506be22c756890adaf9f81d9e6be7455def86c9caf0dc923 secretstorage-checksum = 295e0f75c772edf153480730dc20051f06e60e040a18f169620cb4aaa37b8c1a254a496464d3794a38cf49fa884a7b561fe364816f0d12a5b2622c77259f03cf setuptools-checksum = 1bed75e7173ea0399f078c96cf5c1818dada7a4b86a93e61ff72da6a25694e321b9047e024617aa775b71a25fe8cb0848323902e1fb9c8c8a1f39434f0de6434 setuptools_scm-checksum = 196d4785a1802875d89b9e54ae788e791a9c5cb685109784059955b691242984e42b96d77075116790935f56be82259bc2588d95d65ecbb101261d76daddb83c diff --git a/reproduce/software/config/urls.conf b/reproduce/software/config/urls.conf index 945537d..34c4d89 100644 --- a/reproduce/software/config/urls.conf +++ b/reproduce/software/config/urls.conf @@ -16,8 +16,8 @@ # Basic/low-level programs and libraires (installed in any case) -# -------------------------------------------------------------- -#bash-url = http://akhlaghi.org/maneage-software +# ------------------------------------------------------------- +#bash-url = http://akhlaghi.org/src #binutils-url = http://ftp.gnu.org/gnu/binutils #bzip2-url = http://akhlaghi.org/maneage-software #cert-url = http://akhlaghi.org/maneage-software @@ -86,7 +86,7 @@ #cairo-url = https://www.cairographics.org/releases #cdsclient-url = http://cdsarc.u-strasbg.fr/ftp/pub/sw #cfitsio-url = https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c -#cmake-url = $(shell majv=$$(echo $(cmake-version) | sed -e's/\./ /' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://cmake.org/files/v$$majv/cmake-$(cmake-version).tar.gz) +#cmake-url = $(shell majv=$$(echo $(cmake-version) | sed -e's/\./ /' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://cmake.org/files/v$$majv) #eigen-url = http://bitbucket.org/eigen/eigen/get/$(eigen-version).tar.gz #expat-url = $(shell vstr=$$(echo $(expat-version) | sed -e's/\./_/g'); echo https://github.com/libexpat/libexpat/releases/download/R_$$vstr/expat-$(expat-version).tar.lz) #fftw-url = ftp://ftp.fftw.org/pub/fftw @@ -94,22 +94,23 @@ #freetype-url = https://download.savannah.gnu.org/releases/freetype #gdb-url = http://ftp.gnu.org/gnu/gdb #ghostscript-url = $(shell v=$$(echo $(ghostscript-version) | sed -e's/\.//'); echo https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs$$v) -#gs-fonts-std-url = https://downloads.sourceforge.net/gs-fonts -#gs-fonts-gnu-url = https://downloads.sourceforge.net/gs-fonts #gnuastro-url = http://ftp.gnu.org/gnu/gnuastro +#gperf-url = http://ftp.gnu.org/pub/gnu/gperf +#gs-fonts-gnu-url = https://downloads.sourceforge.net/gs-fonts +#gs-fonts-std-url = https://downloads.sourceforge.net/gs-fonts #gsl-url = http://ftp.gnu.org/gnu/gsl #hdf5-url = $(shell majorver=$$(echo $(hdf5-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$$majorver/hdf5-$(hdf5-version)/src) #healpix-url = http://akhlaghi.org/maneage-software #help2man-url = http://ftp.gnu.org/gnu/help2man +#ibpaper-url=http://ftp.debian.org/debian/pool/main/libp/libpaper/ #imagemagick-url = http://akhlaghi.org/maneage-software #imfit-url = http://www.mpe.mpg.de/~erwin/resources/imfit #lapack-url = http://www.netlib.org/lapack #libffi-url = ftp://sourceware.org/pub/libffi +#libgit2-url = http://akhlaghi.org/src #libidn-url = https://ftp.gnu.org/gnu/libidn -#libgit2-url = https://github.com/libgit2/libgit2/archive #libjpeg-url = http://ijg.org/files #libnsl-url = http://akhlaghi.org/maneage-software -#ibpaper-url=http://ftp.debian.org/debian/pool/main/libp/libpaper/ #libpng-url = https://download.sourceforge.net/libpng #libtiff-url = https://download.osgeo.org/libtiff #libtirpc-url = https://downloads.sourceforge.net/libtirpc @@ -121,7 +122,7 @@ #openssh-url = https://artfiles.org/openbsd/OpenSSH/portable #patch-url = http://ftp.gnu.org/gnu/patch #pixman-url = https://www.cairographics.org/releases -#python-url = https://www.python.org/ftp/python/$(python-version) +#python-url = http://akhlaghi.org/src #R-url = $(shell majver=$$(echo $(R-version) | sed -e's/\./ /g' | awk '{print $$1}'); echo https://cran.r-project.org/src/base/R-$$majver) #rpcsvc-proto-url = https://github.com/thkukuk/rpcsvc-proto/releases/download #scamp-url = http://akhlaghi.org/maneage-software @@ -138,16 +139,16 @@ # Xorg packages # ------------- -#util-macros-url = https://www.x.org/pub/individual/util -#xorgproto-url = https://xorg.freedesktop.org/archive/individual/proto +#fontconfig-url = https://www.freedesktop.org/software/fontconfig/release +#libpthread-stubs-url = https://xcb.freedesktop.org/dist +#libx11-url = https://www.x.org/pub/individual/lib #libxau-url = https://www.x.org/pub/individual/lib #libxdmcp-url = https://www.x.org/pub/individual/lib +#libxext-url = https://www.x.org/pub/individual/lib +#util-macros-url = https://www.x.org/pub/individual/util #xcb-proto-url = https://xorg.freedesktop.org/archive/individual/proto -#fontconfig-url = https://www.freedesktop.org/software/fontconfig/release +#xorgproto-url = https://xorg.freedesktop.org/archive/individual/proto #xtrans-url = https://www.x.org/pub/individual/lib -#libx11-url = https://www.x.org/pub/individual/lib -#libxext-url = https://www.x.org/pub/individual/lib -#libpthread-stubs-url = https://xcb.freedesktop.org/dist @@ -167,7 +168,7 @@ # files" menu, you can download the source '.zip' file. For version 1.18.5, # (with full filename of 'numpy-1.18.5.zip') the link will be like this. # -# numpy-url = https://files.pythonhosted.org/packages/01/1b/d3ddcabd5817be02df0e6ee20d64f77ff6d0d97f83b77f65e98c8a651981/numpy-1.18.5.zip +# numpy-url = https://files.pythonhosted.org/packages/01/1b/d3ddcabd5817be02df0e6ee20d64f77ff6d0d97f83b77f65e98c8a651981 # # Hence, if the version changes, the checksum, and its two top host # directories also change. This is why we aren't putting any URL here by diff --git a/reproduce/software/config/versions.conf b/reproduce/software/config/versions.conf index 7998345..0a9e21e 100644 --- a/reproduce/software/config/versions.conf +++ b/reproduce/software/config/versions.conf @@ -16,24 +16,24 @@ # -------------------------------------------------------------- # # CLASS:BASIC (important identifier, don't modify this line) -bash-version = 5.0.11 -binutils-version = 2.32 -coreutils-version = 8.31 -curl-version = 7.65.3 +bash-version = 5.0.18 +binutils-version = 2.35 +coreutils-version = 8.32 +curl-version = 7.71.1 dash-version = 0.5.10.2 diffutils-version = 3.7 -file-version = 5.36 +file-version = 5.39 findutils-version = 4.7.0 flock-version = 0.2.3 -gawk-version = 5.0.1 -gcc-version = 9.2.0 -gettext-version = 0.20.2 -git-version = 2.26.2 -gmp-version = 6.1.2 -grep-version = 3.3 +gawk-version = 5.1.0 +gcc-version = 10.2.0 +gettext-version = 0.21 +git-version = 2.28.0 +gmp-version = 6.2.0 +grep-version = 3.4 gzip-version = 1.10 isl-version = 0.18 -libbsd-version = 0.9.1 +libbsd-version = 0.10.0 libiconv-version = 1.16 libtool-version = 2.4.6 libunistring-version = 0.9.10 @@ -44,18 +44,18 @@ make-version = 4.3 metastore-version = 1.1.2-23-fa9170b mpc-version = 1.1.0 mpfr-version = 4.0.2 -ncurses-version = 6.1 +ncurses-version = 6.2 patchelf-version = 0.10 -perl-version = 5.30.0 +perl-version = 5.32.0 pkgconfig-version = 0.29.2 readline-version = 8.0 -sed-version = 4.7 +sed-version = 4.8 tar-version = 1.32 -texinfo-version = 6.6 +texinfo-version = 6.7 unzip-version = 6.0 wget-version = 1.20.3 which-version = 2.21 -xz-version = 5.2.4 +xz-version = 5.2.5 zip-version = 3.0 zlib-version = 1.2.11 @@ -83,35 +83,34 @@ bzip2-version = 1.0.6 apachelog4cxx-version = 0.10.0-603-014954db apr-version = 1.7.0 apr-util-version = 1.6.1 -astrometrynet-version = 0.77 +astrometrynet-version = 0.80 atlas-version = 3.10.3 autoconf-version = 2.69.200-babc -automake-version = 1.16.1 -bison-version = 3.6 +automake-version = 1.16.2 +bison-version = 3.7 boost-version = 1.73.0 cairo-version = 1.16.0 cdsclient-version = 3.84 -cfitsio-version = 3.47 -cmake-version = 3.17.0 +cfitsio-version = 3.48 +cmake-version = 3.18.1 eigen-version = 3.3.7 expat-version = 2.2.9 fftw-version = 3.3.8 flex-version = 2.6.4-91-ga631f5d -freetype-version = 2.9 -gdb-version = 8.3 -ghostscript-version = 9.50 +freetype-version = 2.10.2 +gdb-version = 9.2 +ghostscript-version = 9.52 ghostscript-fonts-gnu-version = 6.0 ghostscript-fonts-std-version = 8.11 -gnuastro-version = 0.11 +gnuastro-version = 0.12 gperf-version = 3.1 gsl-version = 2.6 -hdf5-version = 1.10.5 healpix-version = 3.50 help2man-version = 1.47.11 imagemagick-version = 7.0.8-67 imfit-version = 1.6.1 libffi-version = 3.2.1 -libidn-version = 1.35 +libidn-version = 1.36 libjpeg-version = v9b libnsl-version = 1.2.0-4a062cf libpaper-version = 1.1.28 @@ -120,13 +119,13 @@ libtiff-version = 4.0.10 libtirpc-version = 1.2.6 missfits-version = 2.8.0 openblas-version = 0.3.10 -openmpi-version = 4.0.1 +openmpi-version = 4.0.4 openssh-version = 8.0p1 patch-version = 2.7.6 pcre-version = 8.44 pixman-version = 0.38.0 -python-version = 3.7.4 -R-version = 3.6.2 +python-version = 3.8.5 +R-version = 4.0.2 rpcsvc-proto-version = 1.4 scamp-version = 2.6.7 scons-version = 3.0.5 @@ -136,7 +135,7 @@ swig-version = 3.0.12 tides-version = 2.0 util-linux-version = 2.35 xlsxio-version = 0.2.21 -yaml-version = 0.2.2 +yaml-version = 0.2.5 # Xorg packages util-macros-version = 1.19.2 @@ -157,8 +156,8 @@ libpthread-stubs-version = 0.4 # Version-dependent build # ----------------------- lapack-version = 3.8.0 -libgit2-version = 0.28.2 -wcslib-version = 6.4 +libgit2-version = 1.0.1 +wcslib-version = 7.3 # Netpbm's questions in the configure steps maybe change with different or # new versions. @@ -177,6 +176,9 @@ openssl-version = 1.1.1a # any future release. valgrind-version = 3.15.0 +# Be careful with updateing hdf5 because h5py 2.10.0 doesn't work with +# version 1.12.0. +hdf5-version = 1.10.5 @@ -202,7 +204,7 @@ chardet-version = 3.0.4 corner-version = 2.0.1 cryptography-version = 2.6.1 cycler-version = 0.10.0 -cython-version = 0.29.6 +cython-version = 0.29.21 eigency-version = 1.77 emcee-version = 3.0.1 entrypoints-version = 0.3 @@ -210,7 +212,7 @@ esutil-version = 0.6.4 flake8-version = 3.7.8 future-version = 0.18.1 galsim-version = 2.2.1 -h5py-version = 2.9.0 +h5py-version = 2.10.0 html5lib-version = 1.0.1 idna-version = 2.8 jeepney-version = 0.4 @@ -218,22 +220,22 @@ keyring-version = 18.0.0 kiwisolver-version = 1.0.1 lmfit-version = 0.9.14 lsstdesccoord-version = 1.2.0 -matplotlib-version = 3.1.1 -mpi4py-version = 3.0.2 +matplotlib-version = 3.3.0 +mpi4py-version = 3.0.3 mpmath-version = 1.1.0 -numpy-version = 1.17.2 +numpy-version = 1.19.1 pexpect-version = 4.7.0 pip-version = 19.0.2 pycodestyle-version = 2.5.0 pycparser-version = 2.19 pyflakes-version = 2.1.1 -pybind11-version = 2.4.3 +pybind11-version = 2.5.0 pyparsing-version = 2.3.1 pypkgconfig-version = 1.5.1 python-dateutil-version = 2.8.0 pyyaml-version = 5.1 requests-version = 2.21.0 -scipy-version = 1.3.1 +scipy-version = 1.5.2 secretstorage-version = 3.1.1 setuptools-version = 41.6.0 setuptools_scm-version = 3.3.3 @@ -249,3 +251,4 @@ webencodings-version = 0.5.1 # # Healpy: When any Python module is requested, healpix will also build its # Python module Healpy. +healpy-version = xxxxx |