Imported recent updates in Maneage, conflicts fixed

Until now, Maneage had undergone some updates.

With this commit, those updates have been imported and the conflicts that
resulted were fixed. They were all cosmetic and had no effect on the
analysis. The most significant one was about the change in the format of
'INPUTS.conf'.

In the process, I also noticed that the IEEEtran LaTeX package is now
called 'ieeetran' (the 'tlmgr' of TeXLive 2022 was failing).

21 files changed, 40 insertions, 21 deletions

diff --git a/reproduce/software/bibtex/astrometrynet.tex b/reproduce/software/bibtex/astrometrynet.tex
index 15d4829..26d211b 100644
--- a/reproduce/software/bibtex/astrometrynet.tex
+++ b/reproduce/software/bibtex/astrometrynet.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/astropy.tex b/reproduce/software/bibtex/astropy.tex
index c25803b..2041fc3 100644
--- a/reproduce/software/bibtex/astropy.tex
+++ b/reproduce/software/bibtex/astropy.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%% Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/corner.tex b/reproduce/software/bibtex/corner.tex
index b2e0e25..f6b4f22 100644
--- a/reproduce/software/bibtex/corner.tex
+++ b/reproduce/software/bibtex/corner.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%% Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/cython.tex b/reproduce/software/bibtex/cython.tex
index 88a5c4e..30a0713 100644
--- a/reproduce/software/bibtex/cython.tex
+++ b/reproduce/software/bibtex/cython.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/fftw.tex b/reproduce/software/bibtex/fftw.tex
index 7f525c9..1186efa 100644
--- a/reproduce/software/bibtex/fftw.tex
+++ b/reproduce/software/bibtex/fftw.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%% Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/galsim.tex b/reproduce/software/bibtex/galsim.tex
index 3646639..8fceda8 100644
--- a/reproduce/software/bibtex/galsim.tex
+++ b/reproduce/software/bibtex/galsim.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%% Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/gnuastro.tex b/reproduce/software/bibtex/gnuastro.tex
index 1470a00..018a35b 100644
--- a/reproduce/software/bibtex/gnuastro.tex
+++ b/reproduce/software/bibtex/gnuastro.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%% Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/healpix.tex b/reproduce/software/bibtex/healpix.tex
index 08bef90..77471c5 100644
--- a/reproduce/software/bibtex/healpix.tex
+++ b/reproduce/software/bibtex/healpix.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%% Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/imfit.tex b/reproduce/software/bibtex/imfit.tex
index 3822fd4..167586d 100644
--- a/reproduce/software/bibtex/imfit.tex
+++ b/reproduce/software/bibtex/imfit.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/matplotlib.tex b/reproduce/software/bibtex/matplotlib.tex
index c35f682..aab2c04 100644
--- a/reproduce/software/bibtex/matplotlib.tex
+++ b/reproduce/software/bibtex/matplotlib.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/missfits.tex b/reproduce/software/bibtex/missfits.tex
index 9fb0f54..470cf8a 100644
--- a/reproduce/software/bibtex/missfits.tex
+++ b/reproduce/software/bibtex/missfits.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2020-2021 Surena Fatemi <surena.fatemi@ipm.ir>
+%% Copyright (C) 2020-2022 Surena Fatemi <surena.fatemi@ipm.ir>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/mpi4py.tex b/reproduce/software/bibtex/mpi4py.tex
index 9a99803..598bbda 100644
--- a/reproduce/software/bibtex/mpi4py.tex
+++ b/reproduce/software/bibtex/mpi4py.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/numpy.tex b/reproduce/software/bibtex/numpy.tex
index 07101cf..0dee489 100644
--- a/reproduce/software/bibtex/numpy.tex
+++ b/reproduce/software/bibtex/numpy.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/r-cran.tex b/reproduce/software/bibtex/r-cran.tex
new file mode 100644
index 0000000..cf74a8e
--- /dev/null
+++ b/reproduce/software/bibtex/r-cran.tex
@@ -0,0 +1,19 @@
+%% Copyright (C) 2022 Boud Roukema <boud@cosmo.torun.pl>
+%% Copyright (C) 2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%%
+%% Copying and distribution of this file, with or without modification,
+%% are permitted in any medium without royalty provided the copyright
+%% notice and this notice are preserved.  This file is offered as-is,
+%% without any warranty.
+
+@ARTICLE{RIhakaGentleman1996,
+      author = {{Ihaka}, Ross and {Gentleman}, Robert},
+       title = "{R: A language for data analysis and graphics}",
+     journal = {J.Comput.Graph.Stat.},
+        year = {1996},
+      volume = {5},
+      number = {3},
+       pages = {299-314},
+         DOI = {10.1080/10618600.1996.10474713},
+        ISSN = {10618600},
+}
diff --git a/reproduce/software/bibtex/scamp.tex b/reproduce/software/bibtex/scamp.tex
index ab68dd6..62e910c 100644
--- a/reproduce/software/bibtex/scamp.tex
+++ b/reproduce/software/bibtex/scamp.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/scipy.tex b/reproduce/software/bibtex/scipy.tex
index 71b0caa..4b1292d 100644
--- a/reproduce/software/bibtex/scipy.tex
+++ b/reproduce/software/bibtex/scipy.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/sextractor.tex b/reproduce/software/bibtex/sextractor.tex
index 0c91a3d..8905be8 100644
--- a/reproduce/software/bibtex/sextractor.tex
+++ b/reproduce/software/bibtex/sextractor.tex
@@ -1,5 +1,5 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
-%% Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/sip_tpv.tex b/reproduce/software/bibtex/sip_tpv.tex
index 02dfec0..2a5b68b 100644
--- a/reproduce/software/bibtex/sip_tpv.tex
+++ b/reproduce/software/bibtex/sip_tpv.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/swarp.tex b/reproduce/software/bibtex/swarp.tex
index 7636f1c..f645bb3 100644
--- a/reproduce/software/bibtex/swarp.tex
+++ b/reproduce/software/bibtex/swarp.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/sympy.tex b/reproduce/software/bibtex/sympy.tex
index 1d07846..3ce064a 100644
--- a/reproduce/software/bibtex/sympy.tex
+++ b/reproduce/software/bibtex/sympy.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Raul Infante-Sainz <infantesainz@gmail.com>
+%% Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright
diff --git a/reproduce/software/bibtex/tides.tex b/reproduce/software/bibtex/tides.tex
index f3b5490..b97762a 100644
--- a/reproduce/software/bibtex/tides.tex
+++ b/reproduce/software/bibtex/tides.tex
@@ -1,4 +1,4 @@
-%% Copyright (C) 2019-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+%% Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
 %%
 %% Copying and distribution of this file, with or without modification,
 %% are permitted in any medium without royalty provided the copyright