Imported recent updates in Maneage, conflicts fixed

Until now, Maneage had undergone some updates.

With this commit, those updates have been imported and the conflicts that
resulted were fixed. They were all cosmetic and had no effect on the
analysis. The most significant one was about the change in the format of
'INPUTS.conf'.

In the process, I also noticed that the IEEEtran LaTeX package is now
called 'ieeetran' (the 'tlmgr' of TeXLive 2022 was failing).

1 files changed, 10 insertions, 10 deletions

diff --git a/reproduce/analysis/make/top-make.mk b/reproduce/analysis/make/top-make.mk
index 27c1b5b..7755174 100644
--- a/reproduce/analysis/make/top-make.mk
+++ b/reproduce/analysis/make/top-make.mk
@@ -1,6 +1,6 @@
 # Top-level Makefile (first to be loaded).
 #
-# Copyright (C) 2018-2021 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2018-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org>
 #
 # This Makefile is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -20,7 +20,7 @@
 
 
 # Load the local configuration (created after running
-# `./project configure').
+# './project configure').
 include reproduce/software/config/LOCAL.conf
 
 
@@ -30,7 +30,7 @@ include reproduce/software/config/LOCAL.conf
 # Ultimate target of this project
 # -------------------------------
 #
-# The final paper/report (`paper.pdf') is the main target of this
+# The final paper/report ('paper.pdf') is the main target of this
 # project. As defined in the Make paradigm, it must be the first target
 # that Make encounters (immediately after loading the local configuration
 # settings, necessary for a group building scenario mentioned next).
@@ -50,8 +50,8 @@ include reproduce/software/config/LOCAL.conf
 #
 # Controlling this requires two variables that are available at this stage:
 #
-#   - `GROUP-NAME': from `LOCAL.conf' (which was built by `./project configure').
-#   - `maneage_group_name': value to the `--group' option.
+#   - 'GROUP-NAME': from 'LOCAL.conf' (which was built by './project configure').
+#   - 'maneage_group_name': value to the '--group' option.
 #
 # The analysis is only done when both have the same group name. Note that
 # when the project isn't being built for a group, both variables will be an
@@ -63,7 +63,7 @@ include reproduce/software/config/LOCAL.conf
 #
 # If you are just interested in the processing and don't want to build the
 # PDF, you can skip the creation of the final PDF by giving a value of
-# `yes' to `pdf-build-final' in `reproduce/analysis/config/pdf-build.conf'.
+# 'yes' to 'pdf-build-final' in 'reproduce/analysis/config/pdf-build.conf'.
 ifeq ($(separatesupplement),0)
 top-pdfs = paper.pdf
 else
@@ -92,13 +92,13 @@ endif
 # To keep things clean, managable and readable, each set of operations
 # is (and must be) classified (modularized) by context into separate
 # Makefiles: the more the better. These modular steps are then
-# included in this top-level Makefile through the `include' command of
+# included in this top-level Makefile through the 'include' command of
 # the next step. Each Makefile should also produce a LaTeX macro file
 # with the same fixed name (used to keep all the parameters and
 # relevant outputs of the steps in it for the final paper).
 #
 # In the rare case that no special LaTeX macros are necessary in a
-# workhorse Makefile, you can simply make an empty file with `touch
+# workhorse Makefile, you can simply make an empty file with 'touch
 # $@'. This will not add any lines to the final combined LaTeX macros
 # file, but will create the file that is a prerequisite to the final
 # paper generation.
@@ -112,7 +112,7 @@ endif
 # IMPORTANT NOTE: order matters in the inclusion of the processing
 # Makefiles. As the project grows, some Makefiles will define
 # variables/dependencies that later Makefiles need. Therefore we are using
-# a `foreach' loop in the next step to explicitly request loading them in
+# a 'foreach' loop in the next step to explicitly request loading them in
 # the same order that they are defined here (we aren't just using a
 # wild-card like the configuration Makefiles).
 makesrc = initialize \
@@ -136,7 +136,7 @@ makesrc = initialize \
 #      contain rules to actually do this project's processing.
 #
 # But before that, we need to identify the phase for the Makefiles that are
-# run both in `./project prepare' and `./project make'.
+# run both in './project prepare' and './project make'.
 project-phase = make
 include reproduce/analysis/config/*.conf
 include $(foreach s,$(makesrc), reproduce/analysis/make/$(s).mk)