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authorBoud Roukema <boud@cosmo.torun.pl>2020-04-19 16:17:04 +0200
committerBoud Roukema <boud@cosmo.torun.pl>2020-04-19 16:17:04 +0200
commit49cdb178c5ba2712bf922ab178d0379949381c5f (patch)
treef50f4ab4953c53eed423dcd3b88a4e2d48e6d3b3
parente682332669b804bdecaf3eddd2521bcfe0eb7241 (diff)
Principles intro
Word-length reduction (8 words) of the first part of 3 Principles. Change in meaning: we can argue that *results* are not part of science, but science needs aims as well as methods; hypotheses are needed too, but these overlap between the aims and methods. So I put "primarily".
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@@ -199,10 +199,10 @@ As a consequence, before starting with the technical details it is important to
\section{Principles}
\label{sec:principles}
-The core principle of Maneage is simple: science is defined by its method, not its result.
-\citet{buckheit1995} summarize this nicely by noting that modern scientific papers are merely advertisements of a scholarship, the actual scholarship is the coding behind the analysis that ultimately generated the plots/results.
+The core principle of Maneage is simple: science is defined primarily by its method, not its result.
+\citet{buckheit1995} argue that modern scientific papers are merely advertisements of scholarship, while the actual scholarship is the coding behind the analysis that generated the plots/results.
Many solutions have been proposed for this since the early 1990s, including: 1992: \href{https://sep.stanford.edu/doku.php?id=sep:research:reproducible}{RED}; 2003: \href{https://taverna.incubator.apache.org}{Apache Taverna}; 2004: \href{https://www.genepattern.org}{GenePattern}; 2010: \href{https://galaxyproject.org}{Galaxy}, \href{https://wings-workflows.org}{WINGS}; 2011: \href{https://www.ipol.im}{Image Processing On Line journal} (IPOL), \href{https://www.activepapers.org}{Active papers}, \href{https://is.ieis.tue.nl/staff/pvgorp/share}{SHARE}, \href{https://vcr.stanford.edu}{Verifiable Computational Result}; 2012: \href{https://osf.io/ns2m3}{SOLE}; 2015: \href{https://sciunit.run}{Sciunit}; 2017: \href{https://mybinder.org}{Binder}, \href{https://falsifiable.us}{Popper}; 2019: \href{https://wholetale.org}{WholeTale}.
-To highlight the uniqueness of Maneage in this plethora of tools, a more elaborate list of principles are required:
+A detailed list of principles shows how Maneage is unique compared to these other tools:
\begin{enumerate}[label={\bf P\arabic*}]
\item \label{principle:complete}\textbf{Complete:}