From 75571a551f794223bea2995dc7775a49abd63654 Mon Sep 17 00:00:00 2001 From: Raul Infante-Sainz Date: Wed, 20 Mar 2019 17:41:50 +0000 Subject: Including ATLAS in the pipeline, not yet complete An initial installation of atlas is now included in the pipeline, but we are still trying to make it compile and build smoothly. In the process, we found that GCC also needs some modifications (for example rpath issues). --- reproduce/src/make/dependencies.mk | 70 ++++++++++++++++++++++++++++++++++++-- 1 file changed, 67 insertions(+), 3 deletions(-) (limited to 'reproduce/src/make/dependencies.mk') diff --git a/reproduce/src/make/dependencies.mk b/reproduce/src/make/dependencies.mk index deb9f39..7b34b31 100644 --- a/reproduce/src/make/dependencies.mk +++ b/reproduce/src/make/dependencies.mk @@ -44,7 +44,7 @@ ilidir = $(BDIR)/dependencies/installed/lib/built # Define the top-level programs to build (installed in `.local/bin'). top-level-programs = astnoisechisel flock metastore unzip zip -top-level-libraries = freetype +top-level-libraries = atlas freetype all: $(ddir)/texlive-versions.tex \ $(foreach p, $(top-level-programs), $(ibdir)/$(p)) \ $(foreach p, $(top-level-libraries), $(ilidir)/$(p)) @@ -67,12 +67,12 @@ all: $(ddir)/texlive-versions.tex \ .SHELLFLAGS := --noprofile --norc -ec export CCACHE_DISABLE := 1 export PATH := $(ibdir) -export LD_RUN_PATH := $(ildir) -export LD_LIBRARY_PATH := $(ildir) export SHELL := $(ibdir)/bash export CPPFLAGS := -I$(idir)/include export PKG_CONFIG_PATH := $(ildir)/pkgconfig export PKG_CONFIG_LIBDIR := $(ildir)/pkgconfig +export LD_RUN_PATH := $(ildir):$(il64dir) +export LD_LIBRARY_PATH := $(ildir):$(il64dir) export LDFLAGS := $(rpath_command) -L$(ildir) @@ -90,6 +90,7 @@ export LDFLAGS := $(rpath_command) -L$(ildir) # another format, we'll do the modification before the download so the # downloaded file has our desired format. tarballs = $(foreach t, cfitsio-$(cfitsio-version).tar.gz \ + atlas-$(atlas-version).tar.bz2 \ cmake-$(cmake-version).tar.gz \ curl-$(curl-version).tar.gz \ flock-$(flock-version).tar.xz \ @@ -100,6 +101,7 @@ tarballs = $(foreach t, cfitsio-$(cfitsio-version).tar.gz \ gsl-$(gsl-version).tar.gz \ install-tl-unx.tar.gz \ jpegsrc.$(libjpeg-version).tar.gz \ + lapack-$(lapack-version).tar.gz \ libbsd-$(libbsd-version).tar.xz \ libpng-$(libpng-version).tar.xz \ libtool-$(libtool-version).tar.xz \ @@ -130,6 +132,9 @@ $(tarballs): $(tdir)/%: : (l==2 ? "%d00\n" \ : "%d000\n") ), $$1)}') w=https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio$$v.tar.gz + elif [ $$n = atlas ]; then + mergenames=0 + w=https://sourceforge.net/projects/math-atlas/files/Stable/$(atlas-version)/atlas$(atlas-version).tar.bz2/download elif [ $$n = cmake ]; then w=https://cmake.org/files/v3.12 elif [ $$n = curl ]; then w=https://curl.haxx.se/download elif [ $$n = flock ]; then w=https://github.com/discoteq/flock/releases/download/v$(flock-version) @@ -140,6 +145,7 @@ $(tarballs): $(tdir)/%: elif [ $$n = gsl ]; then w=http://ftpmirror.gnu.org/gnu/gsl elif [ $$n = install ]; then w=http://mirror.ctan.org/systems/texlive/tlnet elif [ $$n = jpegsrc ]; then w=http://ijg.org/files + elif [ $$n = lapack ]; then w=http://www.netlib.org/lapack elif [ $$n = libbsd ]; then w=http://libbsd.freedesktop.org/releases elif [ $$n = libpng ]; then w=https://download.sourceforge.net/libpng elif [ $$n = libtool ]; then w=http://ftpmirror.gnu.org/gnu/libtool @@ -251,6 +257,64 @@ $(ilidir)/libtiff: $(tdir)/tiff-$(libtiff-version).tar.gz \ --disable-webp --disable-zstd) \ && echo "Libtiff is built" > $@ +$(ilidir)/atlas: $(tdir)/atlas-$(atlas-version).tar.bz2 \ + $(tdir)/lapack-$(lapack-version).tar.gz + + + # Get the CPU frequency. + if [ x$(on_mac_os) = xyes ]; then + core=2400 + else + core=$$(cat /proc/cpuinfo | grep "cpu MHz" \ + | head -n 1 \ + | sed "s/.*: \([0-9.]*\).*/\1/") + fi + + # See if the shared libraries should be build for a single CPU + # thread or multiple threads. + N=$$(nproc) + srcdir=$$(pwd)/reproduce/src/make + if [ $$N = 1 ]; then + sharedmk=$$srcdir/dependencies-atlas-single.mk + else + sharedmk=$$srcdir/dependencies-atlas-multiple.mk + fi + + # The linking step here doesn't recognize the `-Wl' in the + # `rpath_command'. + export LDFLAGS=-L$(ildir) + + cd $(ddir) + tar xf $< + cd ATLAS + rm -rf build + mkdir build + cd build + ../configure -b 64 -D c -DPentiumCPS=$$core \ + --with-netlib-lapack-tarfile=$(word 2, $^) \ + --cripple-atlas-performance \ + -Fa alg -fPIC --shared \ + --prefix=$(idir) + + # Do the basic build and the extra shared libraries. + make + cd lib && make -f $$sharedmk && cd .. + + # Add RPATH to all the shared libraries. + for l in lib/*.so*; do patchelf --set-rpath $(ildir) $$l; done + + # Install the libraires. + make install + cp -d lib/*.so* $(ildir) + [ -e lib/libptlapack.a ] && cp lib/libptlapack.a $(ildir) + ln -fs $(ildir)/libblas.so $(ildir)/libblas.so.3 + ln -fs $(ildir)/liblapack.so.3.6.1 $(ildir)/liblapack.so + ln -fs $(ildir)/liblapack.so.3.6.1 $(ildir)/liblapack.so.3 + exit 1 + cd $(ddir) + rm -rf ATLAS + echo "Atlas is built" > $@ + -- cgit v1.2.1