From 3e583296cb8ed2784f6cb71b53cbe3be4931fa46 Mon Sep 17 00:00:00 2001
From: Raul Infante-Sainz <infantesainz@gmail.com>
Date: Thu, 21 Mar 2019 15:39:06 +0000
Subject: ATLAS and Scipy working on GNU/Linux

Numpy needs ATLAS as shared libraries. So we also need to build Python with
shared libraries.  We also need to define site.cfg for numpy and scipy so we
define a master template:
`reproduce/config/pipeline/dependency-numpy-scipy.cfg'

Also `Openssl' did not have rpath so we added with this commit.
---
 .../config/pipeline/dependency-numpy-scipy.cfg     | 47 ++++++++++++++++++++++
 reproduce/config/pipeline/dependency-versions.mk   |  2 +-
 2 files changed, 48 insertions(+), 1 deletion(-)
 create mode 100644 reproduce/config/pipeline/dependency-numpy-scipy.cfg

(limited to 'reproduce/config/pipeline')

diff --git a/reproduce/config/pipeline/dependency-numpy-scipy.cfg b/reproduce/config/pipeline/dependency-numpy-scipy.cfg
new file mode 100644
index 0000000..55e93bc
--- /dev/null
+++ b/reproduce/config/pipeline/dependency-numpy-scipy.cfg
@@ -0,0 +1,47 @@
+# THIS IS A COPY OF NUMPY'S site.cfg.example, CUSTOMIZED FOR THIS PIPELINE
+# ------------------------------------------------------------------------
+
+# This file provides configuration information about non-Python dependencies for
+# numpy.distutils-using packages. Create a file like this called "site.cfg" next
+# to your package's setup.py file and fill in the appropriate sections. Not all
+# packages will use all sections so you should leave out sections that your
+# package does not use.
+
+# IMPORTANT NOTE
+# --------------
+#
+# The `ALL' grouping does't apply to ATLAS!!!!!
+
+ [ALL]
+ library_dirs = @LIBDIR@
+ include_dirs = @INCDIR@
+
+# Atlas
+# -----
+# Atlas is an open source optimized implementation of the BLAS and Lapack
+# routines. NumPy will try to build against Atlas by default when available in
+# the system library dirs. To build numpy against a custom installation of
+# Atlas you can add an explicit section such as the following. Here we assume
+# that Atlas was configured with ``prefix=/opt/atlas``.
+#
+ [atlas]
+ library_dirs = @LIBDIR@
+ include_dirs = @INCDIR@
+
+# FFT libraries
+# -------------
+# There are two FFT libraries that we can configure here: FFTW (2 and 3) and djbfft.
+# Note that these libraries are not used by numpy or scipy.
+#
+#   http://fftw.org/
+#   https://cr.yp.to/djbfft.html
+#
+# Given only this section, numpy.distutils will try to figure out which version
+# of FFTW you are using.
+#[fftw]
+#libraries = fftw3
+#
+# For djbfft, numpy.distutils will look for either djbfft.a or libdjbfft.a . 
+#[djbfft]
+#include_dirs = /usr/local/djbfft/include
+#library_dirs = /usr/local/djbfft/lib
diff --git a/reproduce/config/pipeline/dependency-versions.mk b/reproduce/config/pipeline/dependency-versions.mk
index 609d1cb..79ecdce 100644
--- a/reproduce/config/pipeline/dependency-versions.mk
+++ b/reproduce/config/pipeline/dependency-versions.mk
@@ -82,7 +82,7 @@ jeepney-version            = 0.4
 kiwisolver-version         = 1.0.1
 keyring-version            = 18.0.0
 matplotlib-version         = 3.0.2
-numpy-version              = 1.16.1
+numpy-version              = 1.16.2
 pip-version                = 19.0.2
 pycparser-version          = 2.19
 pyparsing-version          = 2.3.1
-- 
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