From 313b936b502d22b6a2ff43f560dee0bb51fd01d0 Mon Sep 17 00:00:00 2001
From: Mohammad Akhlaghi <mohammad@akhlaghi.org>
Date: Mon, 15 Apr 2019 01:47:58 +0100
Subject: New architecture to separate software-building and analysis steps

Until now, the software building and analysis steps of the pipeline were
intertwined. However, these steps (of how to build a software, and how to
use it) are logically completely independent.

Therefore with this commit, the pipeline now has a new architecture
(particularly in the `reproduce' directory) to emphasize this distinction:
The `reproduce' directory now has the two `software' and `analysis'
subdirectories and the respective parts of the previous architecture have
been broken up between these two based on their function. There is also no
more `src' directory. The `config' directory for software and analysis is
now mixed with the language-specific directories.

Also, some of the software versions were also updated after some checks
with their webpages.

This new architecture will allow much more focused work on each part of the
pipeline (to install the software and to run them for an analysis).
---
 paper.tex | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

(limited to 'paper.tex')

diff --git a/paper.tex b/paper.tex
index 6939284..628e9aa 100644
--- a/paper.tex
+++ b/paper.tex
@@ -57,7 +57,7 @@
   \textsl{Keywords}: Add some keywords for your research here.
 
   \textsl{Reproducible paper}: All quantitave results (numbers and plots)
-  in this paper are exactly reproducible (version \pipelineversion{},
+  in this paper are exactly reproducible (version \projectversion{},
   \url{https://gitlab.com/makhlaghi/reproducible-paper}).}
 
 %% To add the first page's headers.
@@ -77,7 +77,7 @@ Just don't forget to \emph{never} use numbers or fixed strings (for example
 database urls like \url{\wfpctwourl}) directly within your \LaTeX{}
 source. Read them directly from your configuration files, or processing
 outputs, and import them into \LaTeX{} as macros through the
-\texttt{tex/pipeline/macros/pipeline.tex} file (created after running the
+\texttt{tex/build/macros/project.tex} file (created after running the
 project). See the several existing examples within the template for a
 demonstration. For some recent real-world examples, the reproducible
 project sources for Sections 4 and 7.3 of \citet{bacon17} are available at
@@ -194,7 +194,7 @@ source code and the project's source to a long-lasting host like Zenodo
 
 This research was partly done using GNU Astronomy Utilities (Gnuastro,
 ascl.net/1801.009), and the reproducible paper template
-\pipelineversion. Work on Gnuastro and the reproducible paper template has
+\projectversion. Work on Gnuastro and the reproducible paper template has
 been funded by the Japanese Ministry of Education, Culture, Sports,
 Science, and Technology (MEXT) scholarship and its Grant-in-Aid for
 Scientific Research (21244012, 24253003), the European Research Council
@@ -203,7 +203,7 @@ and innovation programme under Marie Sklodowska-Curie grant agreement No
 721463 to the SUNDIAL ITN, and from the Spanish Ministry of Economy and
 Competitiveness (MINECO) under grant number AYA2016-76219-P.
 
-\input{tex/pipeline/macros/dependencies.tex}
+\input{tex/build/macros/dependencies.tex}
 
 %% Tell BibLaTeX to put the bibliography list here.
 \printbibliography
-- 
cgit v1.2.1

