From 5ae1fdc475d4476c6371fc5b27880634782549d9 Mon Sep 17 00:00:00 2001 From: Mohammad Akhlaghi Date: Mon, 19 Nov 2018 11:58:53 +0000 Subject: Gzip's tarball in tar.gz instead of tar.lz Until now, we were using a customized `tar.lz' tarball for Gzip. But on systems that don't have GNU Tar, this will cause a problem (non-GNU Tar doesn't recognize `.tar.lz'). So to keep things simple, we are using the customized gzip in `tar.gz' format. After the internal build of GNU Tar and Lzip, the default method of unpacking (`tar xf XXXXX.tar.XX') will work nicely on all the standard compression algorithms and we don't have to modify our commands based on the algorithm (nice feature of GNU Tar). --- README | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) (limited to 'README') diff --git a/README b/README index b860090..e28bd81 100644 --- a/README +++ b/README @@ -27,14 +27,15 @@ Running the pipeline 2. Configure the environment (top-level directories in particular) and build all the necessary software for use in the next step. It is - recommended to modify the directories. Please read the comments (lines - starting with an `#') in the file that is opened by `./configure' and - set the directories accordingly. + recommended to modify the directories. Please read the description of + each necessary input clearly and set the best value. Note that the + configure scripts also downloads, builds and locally installs many + programs (pipeline dependencies). So it may take a while to complete. $ ./configure -3. Run the following command to reproduce all the analysis and build the - final `paper.pdf' on 8 threads. If your CPU has a different number of - threads, change the number. +3. Run the following command (local build of Make) to reproduce all the + analysis and build the final `paper.pdf' on *8* threads. If your CPU has + a different number of threads, change the number. - $ .local/bin/make -j8 + $ ./.local/bin/make -j8 -- cgit v1.2.1