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<title>paper-concept.git/tex/img, branch master</title>
<subtitle>Paper (Towards Long-term and Archivable Reproducibility)</subtitle>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/'/>
<entry>
<title>Imported recent updates in Maneage, conflicts fixed</title>
<updated>2022-05-09T21:52:29+00:00</updated>
<author>
<name>Mohammad Akhlaghi</name>
<email>mohammad@akhlaghi.org</email>
</author>
<published>2022-05-09T11:32:47+00:00</published>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/commit/?id=9fdeebaacd06d57c479cd69e9937c4bfe5d0a286'/>
<id>9fdeebaacd06d57c479cd69e9937c4bfe5d0a286</id>
<content type='text'>
Until now, Maneage had undergone some updates.

With this commit, those updates have been imported and the conflicts that
resulted were fixed. They were all cosmetic and had no effect on the
analysis. The most significant one was about the change in the format of
'INPUTS.conf'.

In the process, I also noticed that the IEEEtran LaTeX package is now
called 'ieeetran' (the 'tlmgr' of TeXLive 2022 was failing).
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
Until now, Maneage had undergone some updates.

With this commit, those updates have been imported and the conflicts that
resulted were fixed. They were all cosmetic and had no effect on the
analysis. The most significant one was about the change in the format of
'INPUTS.conf'.

In the process, I also noticed that the IEEEtran LaTeX package is now
called 'ieeetran' (the 'tlmgr' of TeXLive 2022 was failing).
</pre>
</div>
</content>
</entry>
<entry>
<title>Updated copyrights of project-specific copyrights</title>
<updated>2021-01-03T15:50:32+00:00</updated>
<author>
<name>Mohammad Akhlaghi</name>
<email>mohammad@akhlaghi.org</email>
</author>
<published>2021-01-03T15:50:32+00:00</published>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/commit/?id=44e5ba49bf9bece4f032f8af62229f2dd78a218f'/>
<id>44e5ba49bf9bece4f032f8af62229f2dd78a218f</id>
<content type='text'>
Having entered 2021, it was necessary to update the years of all the
copyright statements.
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
Having entered 2021, it was necessary to update the years of all the
copyright statements.
</pre>
</div>
</content>
</entry>
<entry>
<title>Custom-built EPS icons in branching figure</title>
<updated>2020-06-12T23:55:56+00:00</updated>
<author>
<name>Marjan Akbari</name>
<email>mrjakbari@gmail.com</email>
</author>
<published>2020-06-12T23:45:04+00:00</published>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/commit/?id=be609403b4ba0d520a038b45daffa433e1c5ec5e'/>
<id>be609403b4ba0d520a038b45daffa433e1c5ec5e</id>
<content type='text'>
Until now, we were using three EPS (created from SVG) that were downloaded
from https://www.flaticon.com. Therefore it was necessary to acknowledge
the creators and put a link to the webpage. This consumed space in the
caption and decreased the originality of the plot.

Another problem was that the "collaboration" icon (with three people in it)
had arrows, and some of those arrows pointed downwards, make ambiguity in
relation to the top-ward arrows under the commits.

With this commit, three alternative icons are added that I made from
scratch, using Inkscape. The collaboration icon now is two figures and two
speech-bubbles, without any arrows.
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
Until now, we were using three EPS (created from SVG) that were downloaded
from https://www.flaticon.com. Therefore it was necessary to acknowledge
the creators and put a link to the webpage. This consumed space in the
caption and decreased the originality of the plot.

Another problem was that the "collaboration" icon (with three people in it)
had arrows, and some of those arrows pointed downwards, make ambiguity in
relation to the top-ward arrows under the commits.

With this commit, three alternative icons are added that I made from
scratch, using Inkscape. The collaboration icon now is two figures and two
speech-bubbles, without any arrows.
</pre>
</div>
</content>
</entry>
<entry>
<title>Added SoftwareHeritage link, minor typo corrections and clarifications</title>
<updated>2020-06-07T21:04:46+00:00</updated>
<author>
<name>Mohammad Akhlaghi</name>
<email>mohammad@akhlaghi.org</email>
</author>
<published>2020-06-07T19:03:33+00:00</published>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/commit/?id=77aa9c1ebc26ae88b37f3127a73fd0c8973378d3'/>
<id>77aa9c1ebc26ae88b37f3127a73fd0c8973378d3</id>
<content type='text'>
The git history of the project is now archived on SoftwareHeritage and a
link to it as was added in the "Reproducible supplement" tag just under the
abstract.

Also, some corrections were also made in the text. In particular, the part
explaining the separation of software and data reproducibility was slightly
clarified to be more clear
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
The git history of the project is now archived on SoftwareHeritage and a
link to it as was added in the "Reproducible supplement" tag just under the
abstract.

Also, some corrections were also made in the text. In particular, the part
explaining the separation of software and data reproducibility was slightly
clarified to be more clear
</pre>
</div>
</content>
</entry>
<entry>
<title>First implementation of style in IEEEtran style</title>
<updated>2020-05-02T03:42:58+00:00</updated>
<author>
<name>Mohammad Akhlaghi</name>
<email>mohammad@akhlaghi.org</email>
</author>
<published>2020-05-02T03:38:55+00:00</published>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/commit/?id=2bfa3a043dcf394492a33bbcb16121dcb227b5ed'/>
<id>2bfa3a043dcf394492a33bbcb16121dcb227b5ed</id>
<content type='text'>
The paper is no longer using LuaLaTeX, but raw LaTeX (that saves a DVI), it
is so much faster! Initially I had used LuaLaTeX to use special fonts to
resemble the CODATA Data Science Journal, but all that overhead is no
longer necessary. Therefore I also removed the MANY extra LaTeX packages we
were importing. The paper builds and is able to construct one of its images
(the git-branching figure) with only 7 packages beyond the minimal
TeX/LaTeX installation. Also in terms of processing it is so much faster.

The text is just temporary now, and mainly just a place holder. With the
next commit, I'll fill it with proper text.
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
The paper is no longer using LuaLaTeX, but raw LaTeX (that saves a DVI), it
is so much faster! Initially I had used LuaLaTeX to use special fonts to
resemble the CODATA Data Science Journal, but all that overhead is no
longer necessary. Therefore I also removed the MANY extra LaTeX packages we
were importing. The paper builds and is able to construct one of its images
(the git-branching figure) with only 7 packages beyond the minimal
TeX/LaTeX installation. Also in terms of processing it is so much faster.

The text is just temporary now, and mainly just a place holder. With the
next commit, I'll fill it with proper text.
</pre>
</div>
</content>
</entry>
<entry>
<title>Further text shrink, added Competing interest and Author contributions</title>
<updated>2020-04-14T17:35:34+00:00</updated>
<author>
<name>Mohammad Akhlaghi</name>
<email>mohammad@akhlaghi.org</email>
</author>
<published>2020-04-14T17:35:34+00:00</published>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/commit/?id=2cc4bc2a193bdb5816674266ad03c70c5da96ae6'/>
<id>2cc4bc2a193bdb5816674266ad03c70c5da96ae6</id>
<content type='text'>
To make the text easier to read and further comply with the author
guideline, the text was shrank a little more and the two final sections
were also added on "Competing interest" and "Author contributions".

I also found the CODATA logo on Wikipedia in SVG format (vector graphics),
so I replaced the previous pixelated PNG format with the PDF (converted
from SVG).
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
To make the text easier to read and further comply with the author
guideline, the text was shrank a little more and the two final sections
were also added on "Competing interest" and "Author contributions".

I also found the CODATA logo on Wikipedia in SVG format (vector graphics),
so I replaced the previous pixelated PNG format with the PDF (converted
from SVG).
</pre>
</div>
</content>
</entry>
<entry>
<title>First draft of the version control section and figure complete</title>
<updated>2020-03-31T04:30:29+00:00</updated>
<author>
<name>Mohammad Akhlaghi</name>
<email>mohammad@akhlaghi.org</email>
</author>
<published>2020-03-31T04:30:29+00:00</published>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/commit/?id=66cc8784ac99a6cdff362599ae9b437549e7128f'/>
<id>66cc8784ac99a6cdff362599ae9b437549e7128f</id>
<content type='text'>
The figure was greatly improved, becoming much more clear and descriptive
of some of the main advantages of having version control in a complete
project like Maneage.
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
The figure was greatly improved, becoming much more clear and descriptive
of some of the main advantages of having version control in a complete
project like Maneage.
</pre>
</div>
</content>
</entry>
<entry>
<title>Section on starting new projects, and publishing project added</title>
<updated>2020-03-30T05:01:36+00:00</updated>
<author>
<name>Mohammad Akhlaghi</name>
<email>mohammad@akhlaghi.org</email>
</author>
<published>2020-03-30T05:01:36+00:00</published>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/commit/?id=d11b81f10866a17616878ca6a035eb721e25566f'/>
<id>d11b81f10866a17616878ca6a035eb721e25566f</id>
<content type='text'>
With the main structure of Maneage explained, I have started to explain how
a new project is created, along with a schematic diagram that shows two
scenarios of how Git can help with project management.
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
With the main structure of Maneage explained, I have started to explain how
a new project is created, along with a schematic diagram that shows two
scenarios of how Git can help with project management.
</pre>
</div>
</content>
</entry>
<entry>
<title>Raw draft (until now as a separate repository) imported</title>
<updated>2020-01-18T04:30:24+00:00</updated>
<author>
<name>Mohammad Akhlaghi</name>
<email>mohammad@akhlaghi.org</email>
</author>
<published>2020-01-18T04:03:13+00:00</published>
<link rel='alternate' type='text/html' href='https://git.maneage.org/paper-concept.git/commit/?id=5e830f5fb60c4bb186cbd4bd92908e187c037af4'/>
<id>5e830f5fb60c4bb186cbd4bd92908e187c037af4</id>
<content type='text'>
Until now, I was writing the paper without the template. But we will soon
be adding a tutorial to the template, and I thought it will be good to have
an example demonstration here too. So I just brought the hole project into
the template structure, allowing us to add the template analysis later when
its ready, and also allowing us to easily reproduce this paper ofcourse
(without having to worry about the host's TeXLive installation.
</content>
<content type='xhtml'>
<div xmlns='http://www.w3.org/1999/xhtml'>
<pre>
Until now, I was writing the paper without the template. But we will soon
be adding a tutorial to the template, and I thought it will be good to have
an example demonstration here too. So I just brought the hole project into
the template structure, allowing us to add the template analysis later when
its ready, and also allowing us to easily reproduce this paper ofcourse
(without having to worry about the host's TeXLive installation.
</pre>
</div>
</content>
</entry>
</feed>
