From a4d96c039fc25c1a45502ad3837b27875761af82 Mon Sep 17 00:00:00 2001
From: Mohammad Akhlaghi <mohammad@akhlaghi.org>
Date: Tue, 6 Aug 2019 16:20:26 +0100
Subject: Updated slides for talk in Collibra

The slides were updated (most importantly removing references from the
IAU meeting) for a talk in Collibra.
---
 reproducible-paper.tex | 81 ++++++++++++++++++++++++++++----------------------
 1 file changed, 46 insertions(+), 35 deletions(-)

(limited to 'reproducible-paper.tex')

diff --git a/reproducible-paper.tex b/reproducible-paper.tex
index 2d6fc4d..c153569 100644
--- a/reproducible-paper.tex
+++ b/reproducible-paper.tex
@@ -12,20 +12,24 @@
     (\textcolor{blue}{\href{https://arxiv.org/abs/#1}{arXiv:#1}})}}
 
 %% Set the title
-\title{\LARGE Digging out the low-surface-brightness
-  universe,\\ \textbf{BIG} Data, \textbf{BIG} responsibility
-  \\ {\normalsize (a practical solution for reproducibile science)}}
+\title{\huge\textbf{BIG} Data, \textbf{BIG} responsibility
+  \\ {\normalsize (Data lineage management with template for
+    reproducible scientific papers)}}
 
 %% Set the author
-\author{Mohammad Akhlaghi\\\vspace{2mm}\footnotesize Instituto de
-  Astrof\'isica de Canarias ({\scriptsize IAC}),\\Tenerife, Spain\\
-  \vspace{0.5cm} \raisebox{+0.8\height}{\includegraphics[width=2cm]{img/ull.png}}{ }{
-  }\includegraphics[width=1.5cm]{img/iac.png}{ }{ }{
-  }\includegraphics[width=2cm]{img/sundial.png}\vspace{0.5cm}
+\author{\href{http://akhlaghi.org}{Mohammad
+    Akhlaghi}\\\vspace{2mm}\footnotesize Instituto de Astrof\'isica de
+  Canarias ({\scriptsize IAC}), Tenerife, Spain\\
+  \vspace{0.25cm} \raisebox{+0.8\height}{\includegraphics[width=1.5cm]{img/ull.png}}{ }{
+  }\includegraphics[width=1cm]{img/iac.png}{ }{ }{
+  }\includegraphics[width=1.5cm]{img/sundial.png}\vspace{0.5cm}\\\vspace{-0.5cm}
+  \hspace{-0.9mm}\includegraphics[width=1.2cm]{img/rda.png}\vspace{0.5cm}
 }
 
 %% Set the date and insitutional logos.
-\date{\scriptsize \href{http://www.iac.es/congreso/iaus355}{IAU Symposium 355, Session 2}, July 8th, 2019\\ Tenerife, Spain}
+\date{\scriptsize Collibra (video-conf), August 6th, 2019\\
+  \vspace{0.1cm} Slides available at
+  \textcolor{blue}{\url{http://akhlaghi.org/pdf/reproducible-paper.pdf}}}
 
 %% For a wider writing width.
 \newcommand\Wider[2][3em]{%
@@ -95,7 +99,7 @@
 
 
   \newcommand{\imgtdir}{/home/mohammad/documents/personal/professional/astronomy/talks/in-prep/images}
-  \begin{frame}{It all started because I wanted to study \emph{real} galaxies...}
+  \begin{frame}{It all started because I wanted to study \emph{real} galaxies...\\ \textcolor{white}{...so I designed NoiseChisel and its parent (GNU Astronomy Utilities)}}
     \centering
     \begin{columns}
       \column{6cm}
@@ -103,7 +107,7 @@
       \column{6cm}
     \end{columns}
   \end{frame}
-  \begin{frame}{It all started because I wanted to study \emph{real} galaxies... So I made NoiseChisel (in Gnuastro)}
+  \begin{frame}{It all started because I wanted to study \emph{real} galaxies...\\\hfill... so I designed NoiseChisel and its parent (GNU Astronomy Utilities)}
     \centering
     \begin{columns}
       \column{6cm}
@@ -125,9 +129,9 @@
 
       \vspace{2mm}
       \begin{itemize}
-        \setlength\itemsep{3mm}
-      \item Outer wing detected to \alert{$\rm{S/N}=1/20$} or
-        \alert{$\sim30$ mag/arcsec$^2$}.
+        \setlength\itemsep{2mm}
+      \item Outer wing detected to \alert{$\rm{S/N}=1/4$} or
+        $\sim28.3$ mag/arcsec$^2$.
       \item
         \textcolor{blue}{\href{https://www.gnu.org/software/gnuastro/manual/html_node/Detecting-large-extended-targets.html}{Complete
             tutorial}} in manual fully describes how to derive/reproduce
@@ -140,8 +144,8 @@
         (\textcolor{blue}{\href{https://arxiv.org/abs/1501.04599}{arXiv:1501.04599}}).
       \item Therefore:
         \begin{itemize}
-        \item Default settings \alert{not enough}.
-        \item Result not \alert{just from NoiseChisel}.
+        \item Default settings not enough.
+        \item Result not just from NoiseChisel.
         \end{itemize}
 
       \item \textcolor{green!80!black}{Low-S/N analysis is hard to reproduce!}
@@ -149,9 +153,9 @@
 
       \vspace{0.5mm}
       \begin{tcolorbox}[boxsep=0pt,left=1mm,right=1mm,top=1mm,bottom=1mm]
-        Simply reporting in your paper that ``\emph{we used
-          NoiseChisel}'' is \alert{not enough} to reproduce, understand,
-        or verify your result.
+        Simply reporting in your paper that ``\emph{\alert{we used
+            NoiseChisel}}'' is \alert{not enough} to reproduce,
+        understand, or verify your result.
       \end{tcolorbox}
 
       \column{9cm}
@@ -218,7 +222,7 @@
       \item Inherently includes \alert{measurements errors}\\(can
         never be exactly reproduced).
       \item Example: Raw telescope image/spectra.
-      \item \alert{\textbf{NOT DISCUSSED HERE (Nacho's talk).}}
+      \item \alert{\textbf{NOT DISCUSSED HERE.}}
       \end{itemize}
 
       \vspace{3.5mm}
@@ -273,17 +277,27 @@
   \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
   \begin{frame}{Example: Matplotlib (a Python visualization library) build dependencies}
     \Wider[5em]{
-      \vspace{5mm}
+      %\vspace{5mm}
       \begin{center}
-        \includegraphics[width=0.9\linewidth]{img/matplotlib.pdf}
+        \includegraphics[width=0.9\linewidth]{img/matplotlib.png}
       \end{center}
 
-      \vspace{-1mm}\tiny From ``Attributing and Referencing (Research)
+      \vspace{3mm}\tiny From ``Attributing and Referencing (Research)
       Software: Best Practices and Outlook from Inria'' (Alliez et
       al. 2019,
       \textcolor{blue}{\href{https://hal.archives-ouvertes.fr/hal-02135891}{hal-02135891}})
     }
   \end{frame}
+  \begin{frame}{Impact of ``Dependency hell'' on native building in various hardware (CPU architectures)}
+    \begin{columns}
+      \column{7cm}
+      \includegraphics[width=0.9\linewidth]{img/cpu-arch-astropy.png}
+      Astropy depends on Matplotlib
+      \column{6cm}
+      \includegraphics[width=0.9\linewidth]{img/cpu-arch-gnuastro.png}
+      GNU Astronomy Utilities doesn't.
+    \end{columns}
+  \end{frame}
   \newcommand{\containers}{}
   \begin{frame}{General outline of a project} \include{tex/project-graph} \end{frame}
   \newcommand{\db}{}
@@ -904,24 +918,21 @@
     \item Science can progress \alert{incrementally}
       \textcolor{gray}{(shorter papers actually building on each
         other!)}.
+    \item \alert{Extract meta-data} after the publication of a dataset
+      (for future ontologies or vocabularies).
     \item Applying \alert{machine learning} on reproducible research
-      projects will allow us to solve \alert{Johan's Big Data
-        Challenges} \textcolor{gray}{(from this morning)}:
+      projects will allow us to solve some Big Data Challenges:
 
       \vspace{1em}
       \begin{itemize}
         \setlength\itemsep{2mm}
-      \item ``\emph{Extract the relevant parameters automatically}''.
-      \item ``\emph{Translate the science we will see this week to enormous
-        samples}''.
-      \item ``\emph{Believe the results when no one will have time to
-        reproduce}''.
-      \item ``\emph{Have confidence in results derived using machine
-        learning or AI}''.
+      \item \emph{Extract the relevant parameters automatically}.
+      \item \emph{Translate the science to enormous samples}.
+      \item \emph{Believe the results when no one will have time to
+        reproduce}.
+      \item \emph{Have confidence in results derived using machine
+        learning or AI}.
       \end{itemize}
-
-      \item \textcolor{green!70!black}{\textbf{Sixth paradigm of scientific
-          discovery?}}.
     \end{itemize}
   \end{frame}
 
-- 
cgit v1.2.1

