# Build the VERY BASIC project software before higher-level ones. Assuming
# minimal/generic Make and Shell.
#
# ------------------------------------------------------------------------
# !!!!! IMPORTANT NOTES !!!!!
#
# This Makefile will be run by the initial './project configure' script. It
# is not included into the project afterwards.
#
# This Makefile builds low-level and basic tools that are necessary in any
# project like like GNU Tar, GNU Bash, GNU Make, GCC and etc. But before
# control reaches here, the 'configure.sh' script has already built the
# extremely low-level tools: Lzip (a compressing program), GNU Make (to be
# able to run this Makefile with a fixed version), Dash (a minimalist
# POSIX-compatible shell) and Flock (to allow locking files, and
# serializing when necessary: downloading during the software building
# phase). Thanks to GNU Make and Dash, we can assume a fixed structure in
# this Makefile. However, the 'PATH's in this Makefile still include the
# host's paths because we will be using the hosts tools (gradually
# decreasing) to build our own tools.
#
# ------------------------------------------------------------------------
#
# Copyright (C) 2018-2025 Mohammad Akhlaghi <mohammad@akhlaghi.org>
# Copyright (C) 2019-2025 Raul Infante-Sainz <infantesainz@gmail.com>
# Copyright (C) 2022-2025 Pedram Ashofteh Ardakani <pedramardakani@pm.me>
#
# This Makefile is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This Makefile is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this Makefile. If not, see <http://www.gnu.org/licenses/>.
# Top level environment
include reproduce/software/config/LOCAL.conf
include reproduce/software/make/build-rules.mk
include reproduce/software/config/versions.conf
include reproduce/software/config/checksums.conf
# The optional URLs of software. Note that these may need the software
# version, so it is important that they be loaded after 'versions.conf'.
include reproduce/software/config/urls.conf
# Basic directories
lockdir = $(BDIR)/software/locks
tdir = $(BDIR)/software/tarballs
ddir = $(BDIR)/software/build-tmp
idir = $(BDIR)/software/installed
ibdir = $(BDIR)/software/installed/bin
ildir = $(BDIR)/software/installed/lib
iidir = $(BDIR)/software/installed/include
shsrcdir = "$(shell pwd)"/reproduce/software/shell
ibidir = $(BDIR)/software/installed/version-info/proglib
# Ultimate Makefile target. GNU Nano (a simple and very light-weight text
# editor) is installed by default, it is recommended to have it in the
# 'basic.mk', so Maneaged projects can be edited on any system (even when
# there is no command-line text editor available).
targets-proglib = low-level-links \
gcc-$(gcc-version) \
nano-$(nano-version)
all: $(foreach p, $(targets-proglib), $(ibidir)/$(p))
# Define the shell environment
# ----------------------------
#
# We build GNU Bash here in 'basic.mk'. So here we must must assume DASH
# shell that was built before calling this Makefile:
# http://gondor.apana.org.au/~herbert/dash. DASH is a minimalist POSIX
# shell, so it doesn't have startup options like '--noprofile --norc'. But
# from its manual, to load startup files, Dash actually requires that it be
# called with a '-' before it (for example '-dash'), so it shouldn't be
# loading any startup files if it was interpretted properly.
#
# As we build more programs, we want to use this project's built programs
# and libraries, not the host's, so in all PATH-related environments, our
# own build-directory comes first.
.ONESHELL:
.SHELLFLAGS := -e -c
export CCACHE_DISABLE := 1
export SHELL := $(ibdir)/dash
export PATH := $(ibdir):$(PATH)
export PKG_CONFIG_PATH := $(ildir)/pkgconfig
export PKG_CONFIG_LIBDIR := $(ildir)/pkgconfig
export LDFLAGS := $(rpath_command) -L$(ildir) $(LDFLAGS)
# Disable built-in rules (which are not needed here!)
.SUFFIXES:
# See description of '-Wno-nullability-completeness' in
# 'reproduce/software/shell/configure.sh'.
ifeq ($(on_mac_os),yes)
noccwarnings=-Wno-nullability-completeness
endif
export CPPFLAGS := -I$(idir)/include $(CPPFLAGS) $(noccwarnings)
# This is the "basic" tools where we are relying on the host operating
# system, but are slowly populating our basic software envirnoment. To run
# (system or template) programs, 'LD_LIBRARY_PATH' is necessary, so here,
# we'll first tell the programs to look into any possible pre-defined
# 'LD_LIBRARY_PATH', then we'll add our own newly installed libraries. We
# will also make sure that there is no "current directory" in it (by
# removing a starting or trailing ':' and any occurance of '::'.
#
# But first: in case LD_LIBRARY_PATH is empty, give it the default value of
# $(sys_library_sh_path) (which was the location of the libraries needed by
# the host's shell). This is because after we add the Maneage's library
# path, on some systems, no other libraries will be checked except those
# that are in 'LD_LIBRARY_PATH'.
ifeq ($(strip $(LD_LIBRARY_PATH)),)
export LD_LIBRARY_PATH=$(sys_library_sh_path)
endif
export LD_LIBRARY_PATH := $(shell echo $(LD_LIBRARY_PATH):$(ildir) \
| sed -e's/::/:/g' -e's/^://' -e's/:$$//')
# RPATH is automatically written in macOS, so 'DYLD_LIBRARY_PATH' is
# ultimately redundant. But on some systems, even having a single value
# causes crashs (see bug #56682). So we'll just give it no value at all.
export DYLD_LIBRARY_PATH :=
# Servers to use as backup. Maneage already has some fixed servers that can
# be used to download software tarballs. They are in a configuation
# file. But we give precedence to the "user" backup servers.
#
# One important "user" server (which the user doesn't actually give, but is
# found at configuration time in 'configure.sh') is Zenodo (see the
# description in 'configure.sh' for more on why this depends on
# configuration time).
#
# Afer putting everything together, we use the first server as the
# reference for all software if their '-url' variable isn't defined (in
# 'reproduce/software/config/urls.conf').
downloadwrapper = ./reproduce/analysis/bash/download-multi-try.sh
maneage_backup_urls := $(shell awk '!/^#/{printf "%s ", $$1}' \
reproduce/software/config/servers-backup.conf)
backupservers_all = $(user_backup_urls) $(maneage_backup_urls)
topbackupserver = $(word 1, $(backupservers_all))
backupservers = $(filter-out $(topbackupserver),$(backupservers_all))
# Low-level (not built) programs
# ------------------------------
#
# For the time being, some components of the project aren't being built on
# some systems (primarily on proprietary operating systems). So we are
# simply making a symbolic link to the system's programs/libraries in the
# build directory.
#
# The logical position of this rule is irrelevant in this Makefile (because
# programs being built here have full access to the system's PATH
# already). This is done for the high-level programs installed in
# 'high-level.mk', 'xorg.mk' or 'python.mk'. So this step is done after
# building our own GNU Grep (which is the highest-level program used in
# 'makelink') to have trustable elements.
#
# About ccache: ccache acts like a wrapper over the C compiler and is made
# to avoid/speed-up compiling of identical files in a system (it is
# commonly used on large servers). It actually makes 'gcc' or 'g++' a
# symbolic link to itself so it can control them internally. So, for our
# purpose here, it is very annoying and can cause many complications. We
# thus remove any part of PATH of that has 'ccache' in it before making
# symbolic links to the programs we are not building ourselves.
#
# The double quotations after the starting 'export PATH' are necessary in
# case the user's PATH has space-characters in it.
#
# We use 'realpath' here (part of GNU Coreutils which is already installed
# by the time we use 'makelink') to avoid linking to a link (on the
# host). 'realpath' will follow a link (and possibly other links in the
# middle) to an actual file and return its address. When the location isn't
# a link, it will just return it.
syspath := $(PATH)
makelink = origpath="$$PATH"; \
export PATH="$$(echo $(syspath) \
| tr : '\n' \
| grep -v ccache \
| tr '\n' :)"; \
if type $(1) > /dev/null 2> /dev/null; then \
if [ x$(3) = x ]; then \
ln -sf "$$(realpath $$(command -v $(1)))" $(ibdir)/$(1); \
else \
ln -sf "$$(realpath $$(command -v $(1)))" $(ibdir)/$(3); \
fi; \
else \
if [ "x$(strip $(2))" = xmandatory ]; then \
echo "'$(1)' is necessary for higher-level tools."; \
echo "Please install it for the configuration to continue."; \
exit 1; \
fi; \
fi; \
export PATH="$$origpath"
$(ibdir) $(ildir):; mkdir $@
$(ibidir)/low-level-links: $(ibidir)/grep-$(grep-version) \
| $(ibdir) $(ildir)
# Hardware specific
$(call makelink,lp) # For printing, necessary for R.
$(call makelink,lpr) # For printing, necessary for R.
# Mac OS specific
$(call makelink,mig)
$(call makelink,xcrun)
$(call makelink,sysctl)
$(call makelink,sw_vers)
$(call makelink,codesign)
$(call makelink,dsymutil)
$(call makelink,install_name_tool)
# On Mac OS, libtool is different compared to GNU Libtool. The
# libtool we'll build in the high-level dependencies has the
# executable name 'glibtool'.
$(call makelink,libtool)
# Necessary libraries:
# Libdl (for dynamic loading libraries at runtime)
# POSIX Threads library for multi-threaded programs.
for l in dl pthread; do
if [ -f /usr/lib/lib$$l.a ]; then
for f in /usr/lib/lib$$l.*; do
ln -sf $$(realpath $$f) \
$$(echo $$f | sed -e's|/usr/lib|$(ildir)|')
done
fi
done
# Useful tools: 'ldd' (list libraries linked by binary on GNU
# systems)
$(call makelink,ldd)
# We want this to be empty (so it doesn't interefere with the other
# files in 'ibidir'.
touch $@
# Level 1 (MOST BASIC): Compression programs
# ------------------------------------------
#
# The first set of programs to be built are those that we need to unpack
# the source code tarballs of each program. We have already installed Lzip
# before calling 'basic.mk', so it is present and working. Hence we first
# build the Lzipped tarball of Gzip, then use our own Gzip to unpack the
# tarballs of the other compression programs. Once all the compression
# programs/libraries are complete, we build our own GNU Tar and continue
# with other software.
$(lockdir): | $(BDIR); mkdir $@
$(ibidir)/gzip-$(gzip-version): | $(ibdir) $(ildir) $(lockdir)
tarball=gzip-$(gzip-version).tar.lz
$(call import-source, $(gzip-url), $(gzip-checksum))
$(call gbuild, gzip-$(gzip-version), static, , V=1)
echo "GNU Gzip $(gzip-version)" > $@
# 2022-07-14 B Roukema
#
# xz-5.2.5 fails on (at least) CentOS 7 (Redhat) systems while trying
# to compile 'cmake' in Maneage - this is Maneage bug 62700 [1].
#
# The fix appears to be just a few lines, although it's not clear
# how robust or long-term it is. Since we don't yet have 'patch' in
# 'basic.mk', this file has to be copied into place rather than patched.
# xz-5.2.5_src_liblzma_liblzma.map is a patched
# version of xz-5.2.5/src/liblzma/liblzma.map based on discussion at
# [1] + [2] + the patch file [3].
#
# [1] https://savannah.nongnu.org/bugs/index.php?62700
# [2] https://github.com/easybuilders/easybuild-easyconfigs/issues/14991
# [3] https://raw.githubusercontent.com/easybuilders/easybuild-easyconfigs/bcebb3320ffb63f9804ca8d4d64d1822ec7c9792/easybuild/easyconfigs/x/XZ/XZ-5.2.5_compat-libs.patch
$(ibidir)/xz-$(xz-version): $(ibidir)/gzip-$(gzip-version)
# Prepare the tarball.
tarball=xz-$(xz-version).tar.lz
$(call import-source, $(xz-url), $(xz-checksum))
# Until the bug mentioned above is fixed, we'll can't use the generic
# rule.
# $(call gbuild, xz-$(xz-version), static)
# Configure and build with patched file.
srcdir=$$(pwd)
unpackdir=xz-$(xz-version)
patchedfile=xz-5.2.5_src_liblzma_liblzma.map
cd $(ddir)
rm -rf $$unpackdir
tar -x -f $(tdir)/$$tarball
cd $$unpackdir
cp -pv $$srcdir/reproduce/software/patches/$$patchedfile \
src/liblzma/liblzma.map # copy the fixed file into place
./configure --prefix=$(idir)
make install
cd ..
rm -rf $$unpackdir
echo "XZ Utils $(xz-version)" > $@
$(ibidir)/bzip2-$(bzip2-version): $(ibidir)/gzip-$(gzip-version)
# Download the tarball.
tarball=bzip2-$(bzip2-version).tar.lz
$(call import-source, $(bzip2-url), $(bzip2-checksum))
# Bzip2 doesn't have a './configure' script, and its Makefile doesn't
# build a shared library. So we can't use the 'gbuild' function here
# and we need to take some extra steps (inspired from the GNU/Linux
# from Scratch (LFS) guide for Bzip2):
#
# 1) The 'sed' call is for relative installed symbolic links.
# 2) The special Makefile-libbz2_so builds shared libraries.
#
# NOTE: the major version number appears in the final symbolic link.
tdir=bzip2-$(bzip2-version)
if [ $(static_build) = yes ]; then
makecommand="make LDFLAGS=-static"
makeshared="echo no-shared"
else
makecommand="make"
if [ x$(on_mac_os) = xyes ]; then
makeshared="echo no-shared"
else
makeshared="make -f Makefile-libbz2_so"
fi
fi
cd $(ddir)
rm -rf $$tdir
tar -xf $(tdir)/$$tarball
cd $$tdir
$(shsrcdir)/prep-source.sh $(ibdir)
sed -e 's@\(ln -s -f \)$$(PREFIX)/bin/@\1@' Makefile \
> Makefile.sed
mv Makefile.sed Makefile
$$makeshared CC=cc
cp -a libbz2* $(ildir)/
make clean
$$makecommand CC=cc
make install PREFIX=$(idir)
cd ..
rm -rf $$tdir
cd $(ildir)
ln -fs libbz2.so.$(bzip2-version) libbz2.so
echo "Bzip2 $(bzip2-version)" > $@
# Some programs (like Wget and CMake) that use zlib need it to be dynamic
# so they use our custom build. So we won't force a static-only build.
#
# Note for a static-only build: Zlib's './configure' doesn't use Autoconf's
# configure script, it just accepts a direct '--static' option.
$(ibidir)/zlib-$(zlib-version): $(ibidir)/gzip-$(gzip-version)
tarball=zlib-$(zlib-version).tar.lz
$(call import-source, $(zlib-url), $(zlib-checksum))
$(call gbuild, zlib-$(zlib-version))
echo "Zlib $(zlib-version)" > $@
# GNU Tar: When built statically, tar gives a segmentation fault on
# unpacking Bash. So we'll build it dynamically. Note that technically, zip
# and unzip aren't dependencies of Tar, but for a clean build, we'll set
# Tar to be the last compression-related software (the first-set of
# software to be built).
$(ibidir)/tar-$(tar-version): \
$(ibidir)/xz-$(xz-version) \
$(ibidir)/gzip-$(gzip-version) \
$(ibidir)/zlib-$(zlib-version) \
$(ibidir)/bzip2-$(bzip2-version)
# Since all later programs depend on Tar, the configuration will hit
# a bottleneck here: only making Tar. So its more efficient to built
# it on multiple threads (even when the user's Make doesn't pass down
# the number of threads).
tarball=tar-$(tar-version).tar.lz
$(call import-source, $(tar-url), $(tar-checksum))
$(call gbuild, tar-$(tar-version), , , -j$(numthreads) V=1)
echo "GNU Tar $(tar-version)" > $@
# Level 2 (necessary for linking)
#
# Patchelf is necessary for some software on GNU/Linux systems, its job is
# to manually insert RPATH into the dynamically-linked executable. Since
# all the other software depend on Pathelf, to avoid manually repeating as
# a prerequisite (and forgetting in others causing bugs), we'll put it as a
# dependancy of 'tar'.
$(ibidir)/patchelf-$(patchelf-version): $(ibidir)/tar-$(tar-version)
tarball=patchelf-$(patchelf-version).tar.lz
$(call import-source, $(patchelf-url), $(patchelf-checksum))
if [ x$(on_mac_os) = xyes ]; then
echo "" > $@
else
$(call gbuild, patchelf-$(patchelf-version))
echo "PatchELF $(patchelf-version)" > $@
fi
# Level 3 (THIRD MOST BASIC): Bash
# --------------------------------
#
# GNU Make and GNU Bash are the second layer that we'll need to build the
# basic dependencies.
#
# Unfortunately Make needs dynamic linking in two instances: when loading
# objects (dynamically linked libraries), or when using the 'getpwnam'
# function (for tilde expansion). The first can be disabled with
# '--disable-load', but unfortunately I don't know any way to fix the
# second. So, we'll have to build it dynamically for now.
$(ibidir)/ncurses-$(ncurses-version): $(ibidir)/patchelf-$(patchelf-version)
tarball=ncurses-$(ncurses-version).tar.lz
$(call import-source, $(ncurses-url), $(ncurses-checksum))
# Delete the library that will be installed (so we can make sure the
# build process completed afterwards and reset the links).
rm -f $(ildir)/libncursesw*
# Delete the (possibly existing) low-level programs that depend on
# 'readline', and thus 'ncurses'. Since these programs are actually
# used during the building of 'ncurses', we need to delete them so
# the build process doesn't use the project's Bash and AWK, but the
# host's.
rm -f $(ibdir)/bash* $(ibdir)/awk* $(ibdir)/gawk*
# Standard build process.
$(call gbuild, ncurses-$(ncurses-version), static, \
--with-shared --enable-rpath --without-normal \
--without-debug --with-cxx-binding \
--with-cxx-shared --enable-widec --enable-pc-files \
--with-pkg-config=$(ildir)/pkgconfig, -j$(numthreads))
# Unfortunately there are many problems with 'ncurses' using "normal"
# (or 8-bit) characters. The standard way that will work is to build
# it with wide character mode as you see above in the configuration
# (or the 'w' prefix you see below). Also, most programs (and in
# particular Bash and AWK), first look for other (mostly obsolete)
# libraries like tinfo, which define the same symbols. The links
# below address both situations: we need to fool higher-level
# packages to find this library even if they aren't explicitly
# mentioning its name correctly (as a value to '-l' at link time in
# their configure scripts).
#
# This part is taken from the Arch GNU/Linux build script[1], then
# extended to Mac thanks to Homebrew's script [2].
#
# [1] https://git.archlinux.org/svntogit/packages.git/tree/trunk/PKGBUILD?h=packages/ncurses
# [2] https://github.com/Homebrew/homebrew-core/blob/master/Formula/ncurses.rb
#
# Since we can't have comments, in the connected script, here is a
# summary:
#
# 1. We find the actual suffix of the library, from the file that
# is not a symbolic link (starting with '-' in the output of 'ls
# -l').
#
# 2. We make symbolic links to all the "ncurses", "ncurses++",
# "form", "panel" and "menu" libraries to point to their "wide"
# (character) library.
#
# 3. We make symbolic links to the "tic" and "tinfo" libraries to
# point to the same 'libncursesw' library.
#
# 4. Some programs link with "curses" (not "ncurses", notice the
# starting "n"), so we'll also make links for these to point to
# the 'libncursesw' library.
#
# 5. A link is made to also be able to include files from the
# 'ncurses' headers.
if [ x$(on_mac_os) = xyes ]; then so="dylib"; else so="so"; fi
if [ -f $(ildir)/libncursesw.$$so ]; then
unalias ls || true # avoid decorated 'ls' commands with extra characters
sov=$$(ls -l $(ildir)/libncursesw* \
| awk '/^-/{print $$NF}' \
| sed -e "s;$(ildir)/libncursesw\.;;")
cd "$(ildir)"
for lib in ncurses ncurses++ form panel menu; do
ln -fs lib$$lib"w".$$sov lib$$lib.$$so
ln -fs $(ildir)/pkgconfig/"$$lib"w.pc pkgconfig/$$lib.pc
done
for lib in tic tinfo; do
ln -fs libncursesw.$$sov lib$$lib.$$so
ln -fs libncursesw.$$sov lib$$lib.$$sov
ln -fs $(ildir)/pkgconfig/ncursesw.pc pkgconfig/$$lib.pc
done
ln -fs libncursesw.$$sov libcurses.$$so
ln -fs libncursesw.$$sov libcursesw.$$sov
ln -fs $(ildir)/pkgconfig/ncursesw.pc pkgconfig/curses.pc
ln -fs $(ildir)/pkgconfig/ncursesw.pc pkgconfig/cursesw.pc
ln -fs $(idir)/include/ncursesw $(idir)/include/ncurses
echo "GNU NCURSES $(ncurses-version)" > $@
else
exit 1
fi
$(ibidir)/readline-$(readline-version): \
$(ibidir)/ncurses-$(ncurses-version)
tarball=readline-$(readline-version).tar.lz
$(call import-source, $(readline-url), $(readline-checksum))
$(call gbuild, readline-$(readline-version), static, \
--with-curses --disable-install-examples, \
SHLIB_LIBS="-lncursesw" -j$(numthreads))
echo "GNU Readline $(readline-version)" > $@
# IMPORTANT: Even though we have enabled 'rpath', Bash doesn't write the
# absolute adddress of the libraries it depends on! Therefore, if we
# configure Bash with '--with-installed-readline' (so the installed version
# of Readline, that we build below as a prerequisite or AWK, is used) and
# you run 'ldd $(ibdir)/bash' on the resulting binary, it will say that it
# is linking with the system's 'readline'. But if you run that same command
# within a rule in this project, you'll see that it is indeed linking with
# our own built readline.
#
# Unfortunately Bash doesn't maintain a Git repository and minor fixes are
# released as patches. Therefore we'll need to make our own fully-working
# and updated tarball to build the proper version of Bash. You download and
# apply them to the original tarball and make a new one with the following
# series of commands (just replace 'NUMBER' with the total number of
# patches that you want to apply).
#
# $ number=NUMBER
# $ tar -xf bash-5.0.tar.gz
# $ cd bash-5.0
# $ for i in $(seq 1 $number); do \
# pname=bash50-$(printf "%03d" $i); \
# wget http://ftp.gnu.org/gnu/bash/bash-5.0-patches/$pname -O ../$pname;\
# patch -p0 -i ../$pname; \
# done
# $ cd ..
# $ mv bash-5.0 bash-5.0.$number
# $ tar cf bash-5.0.$number.tar bash-5.0.$number
# $ lzip --best bash-5.0.$number.tar
# $ rm -rf bash50-* bash-5.0.$number bash-5.0.tar.gz
$(ibidir)/bash-$(bash-version): \
$(ibidir)/gettext-$(gettext-version) \
$(ibidir)/readline-$(readline-version)
# Download the tarball.
tarball=bash-$(bash-version).tar.lz
$(call import-source, $(bash-url), $(bash-checksum))
# Delete the (possibly) existing Bash executable in the project,
# let it use the default shell of the host.
rm -f $(ibdir)/bash
# Bash has many '--enable' features which are already enabled by
# default. As described in the manual, they are mainly useful when
# you disable them all with '--enable-minimal-config' and enable a
# subset using the '--enable' options.
if [ "x$(static_build)" = xyes ]; then stopt="--enable-static-link"
else stopt=""
fi;
export CFLAGS="$$CFLAGS \
-DDEFAULT_PATH_VALUE='\"$(ibdir)\"' \
-DSTANDARD_UTILS_PATH='\"$(ibdir)\"' \
-DSYS_BASHRC='\"$(BASH_ENV)\"' "
$(call gbuild, bash-$(bash-version),, $$stopt \
--with-installed-readline=$(ildir) \
--with-curses=yes, \
-j$(numthreads))
# Atleast on GNU/Linux systems, Bash doesn't include RPATH by
# default. So, we have to manually include it, currently we are only
# doing this on GNU/Linux systems (using the 'patchelf' program).
if [ -f $(ibdir)/patchelf ]; then
$(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/bash;
fi
# To be generic, some systems use the 'sh' command to call the
# shell. By convention, 'sh' is just a symbolic link to the preferred
# shell executable. So we'll define '$(ibdir)/sh' as a symbolic link
# to the Bash that we just built and installed.
#
# Just to be sure that the installation step above went well, before
# making the link, we'll see if the file actually exists there.
ln -fs $(ibdir)/bash $(ibdir)/sh
echo "GNU Bash $(bash-version)" > $@
# Level 4: Most other programs
# ----------------------------
# In Perl, The '-shared' flag will cause problems while building on macOS,
# so we'll only use this configuration option when we are GNU/Linux
# systems. However, since the whole option must be used (which includes '='
# and empty space), its easier to define the variable as a Make variable
# outside the recipe, not as a shell variable inside it.
ifeq ($(on_mac_os),yes)
perl-conflddlflags =
else
perl-conflddlflags = -Dlddlflags="-shared $$LDFLAGS"
endif
$(ibidir)/perl-$(perl-version): $(ibidir)/patchelf-$(patchelf-version)
tarball=perl-$(perl-version).tar.lz
$(call import-source, $(perl-url), $(perl-checksum))
major_version=$$(echo $(perl-version) \
| sed -e's/\./ /g' \
| awk '{printf("%d", $$1)}')
base_version=$$(echo $(perl-version) \
| sed -e's/\./ /g' \
| awk '{printf("%d.%d", $$1, $$2)}')
cd $(ddir)
rm -rf perl-$(perl-version)
tar -xf $(tdir)/$$tarball
cd perl-$(perl-version)
$(shsrcdir)/prep-source.sh $(ibdir)
./Configure -des \
-Dusethreads \
-Duseshrplib \
-Dprefix=$(idir) \
-Dvendorprefix=$(idir) \
-Dprivlib=$(idir)/share/perl$$major_version/core_perl \
-Darchlib=$(idir)/lib/perl$$major_version/$$base_version/core_perl \
-Dsitelib=$(idir)/share/perl$$major_version/site_perl \
-Dsitearch=$(idir)/lib/perl$$major_version/$$base_version/site_perl \
-Dvendorlib=$(idir)/share/perl$$major_version/vendor_perl \
-Dvendorarch=$(idir)/lib/perl$$major_version/$$base_version/vendor_perl \
-Dscriptdir=$(idir)/bin/core_perl \
-Dsitescript=$(idir)/bin/site_perl \
-Dvendorscript=$(idir)/bin/vendor_perl \
-Dinc_version_list=none \
-Dman1ext=1perl \
-Dman3ext=3perl \
-Dcccdlflags='-fPIC' \
$(perl-conflddlflags) \
-Dldflags="$$LDFLAGS"
make -j$(numthreads) V=1
make install
cd ..
rm -rf perl-$(perl-version)
cd $$topdir
echo "Perl $(perl-version)" > $@
# Coreutils
# ---------
#
# For some reason, Coreutils doesn't include 'rpath' in its installed
# executables (even though it says that by default its included and that
# even when calling '--enable-rpath=yes'). So we have to manually add
# 'rpath' to Coreutils' executables after the standard build is
# complete.
#
# One problem is that Coreutils installs many very basic executables which
# might be in used by other programs. So we must make sure that when
# Coreutils is being built, no other program is being built in
# parallel. The solution to the many executables it installs is to make a
# fake installation (with 'DESTDIR'), and get a list of the contents of the
# directory to find the names.
#
# The echo after the PatchELF loop is to avoid a crash if the last
# file that PatchELF encounters is not usable (and it returns with
# an error).
#
# Coreutils uses Perl to create man pages!
$(ibidir)/coreutils-$(coreutils-version): \
$(ibidir)/bash-$(bash-version) \
$(ibidir)/perl-$(perl-version) \
$(ibidir)/openssl-$(openssl-version)
# Import the source tarball.
tarball=coreutils-$(coreutils-version).tar.lz
$(call import-source, $(coreutils-url), $(coreutils-checksum))
# Unpack and enter the source.
cd $(ddir)
rm -rf coreutils-$(coreutils-version)
tar -xf $(tdir)/$$tarball
cd coreutils-$(coreutils-version)
$(shsrcdir)/prep-source.sh $(ibdir)
# Configure, build and install Coreutils.
./configure --prefix=$(idir) SHELL=$(ibdir)/bash \
LDFLAGS="$(LDFLAGS)" CPPFLAGS="$(CPPFLAGS)" \
--disable-silent-rules --with-openssl=yes
make SHELL=$(ibdir)/bash -j$(numthreads)
make SHELL=$(ibdir)/bash install
# Fix RPATH if necessary.
if [ -f $(ibdir)/patchelf ]; then
make SHELL=$(ibdir)/bash install DESTDIR=junkinst
unalias ls || true # avoid decorated 'ls' commands with extra characters
instprogs=$$(ls junkinst/$(ibdir))
for f in $$instprogs; do
$(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/$$f
done
echo "PatchELF applied to all programs."
fi
# Come back up to the unpacking directory, delete the source
# directory and write the final target.
cd ..
rm -rf coreutils-$(coreutils-version)
echo "GNU Coreutils $(coreutils-version)" > $@
# Podlators
#
# POD is short for "Plain Old Documentation", that is the format used in
# Perl's documentation. Podlators provies two executables pod2man and
# pod2text convert this into the roff format (used in man pages) or pod2 It
# is used by some software like OpenSSL to create their man pages.
$(ibidir)/podlators-$(podlators-version): $(ibidir)/perl-$(perl-version)
tarball=podlators-$(podlators-version).tar.lz
$(call import-source, $(podlators-url), $(podlators-checksum))
cd $(ddir)
rm -rf podlators-$(podlators-version)
tar -xf $(tdir)/$$tarball
cd podlators-$(podlators-version)
$(shsrcdir)/prep-source.sh $(ibdir)
perl Makefile.PL
make
make install
ln -sf $(ibdir)/site_perl/pod2man $(ibdir)/pod2man
ln -sf $(ibdir)/site_perl/pod2text $(ibdir)/pod2text
cd ..
rm -rf podlators-$(podlators-version)
echo "podlators $(podlators-version)" > $@
# OpenSSL
#
# Until we find a nice and generic way to create an updated CA file in the
# project, the certificates will be available in a file for this project
# along with the other tarballs.
$(idir)/etc:; mkdir $@
$(idir)/etc/ssl: | $(idir)/etc; mkdir $@
$(ibidir)/openssl-$(openssl-version): $(ibidir)/podlators-$(podlators-version) \
| $(idir)/etc/ssl
# First download the certificates and copy them into the
# installation directory.
tarball=cert.pem-$(certpem-version)
$(call import-source, $(cert-url), $(cert-checksum))
cp $(tdir)/cert.pem-$(certpem-version) $(idir)/etc/ssl/cert.pem
# Now download the OpenSSL tarball.
tarball=openssl-$(openssl-version).tar.lz
$(call import-source, $(openssl-url), $(openssl-checksum))
# According to OpenSSL's Wiki (link bellow), it can't automatically
# detect Mac OS's structure. It will need some help. So we'll use the
# 'on_mac_os' Make variable that we defined in the configure script
# and help it with some extra configuration options and an
# environment variable.
#
# https://wiki.openssl.org/index.php/Compilation_and_Installation
if [ x$(on_mac_os) = xyes ]; then
export KERNEL_BITS=64
copt="shared no-ssl2 no-ssl3 enable-ec_nistp_64_gcc_128"
fi
$(call gbuild, openssl-$(openssl-version), , \
zlib \
$$copt \
$(rpath_command) \
--openssldir=$(idir)/etc/ssl \
--with-zlib-lib=$(ildir) \
--with-zlib-include=$(idir)/include, \
-j$(numthreads), , ./config )
# Manually insert RPATH inside the two created libraries.
if [ -f $(ibdir)/patchelf ]; then
patchelf --set-rpath $(ildir) $(ildir)/libssl.so
patchelf --set-rpath $(ildir) $(ildir)/libcrypto.so
fi
# Build the final target.
echo "OpenSSL $(openssl-version)" > $@
# Downloaders
# -----------
# cURL
#
# cURL can optionally link with many different network-related libraries on
# the host system that we are not yet building in the template. Many of
# these are not relevant to most science projects, so we are explicitly
# using '--without-XXX' or '--disable-XXX' so cURL doesn't link with
# them. Note that if it does link with them, the configuration will crash
# when the library is updated/changed by the host, and the whole purpose of
# this project is avoid dependency on the host as much as possible.
$(ibidir)/curl-$(curl-version): $(ibidir)/coreutils-$(coreutils-version)
tarball=curl-$(curl-version).tar.lz
$(call import-source, $(curl-url), $(curl-checksum))
$(call gbuild, curl-$(curl-version), , \
LIBS="-pthread" \
--with-zlib=$(ildir) \
--with-ssl=$(idir) \
--without-mesalink \
--with-ca-fallback \
--without-librtmp \
--without-libidn2 \
--without-wolfssl \
--without-nghttp2 \
--without-nghttp3 \
--without-brotli \
--without-gnutls \
--without-cyassl \
--without-libpsl \
--without-axtls \
--disable-ldaps \
--disable-ldap \
--without-zstd \
--without-nss, V=1)
if [ -f $(ibdir)/patchelf ]; then
$(ibdir)/patchelf --set-rpath $(ildir) $(ildir)/libcurl.so
fi
echo "cURL $(curl-version)" > $@
# GNU Wget
#
# Note that on some systems (for example GNU/Linux) Wget needs to explicity
# link with 'libdl', but on others (for example Mac OS) it doesn't. We
# check this at configure time and define the 'needs_ldl' variable.
#
# Also note that since Wget needs to load outside libraries dynamically, it
# gives a segmentation fault when built statically.
#
# There are many network related libraries that we are currently not
# building as part of this project. So to avoid too much dependency on the
# host system (especially a crash when these libraries are updated on the
# host), they are disabled here.
$(ibidir)/wget-$(wget-version): \
$(ibidir)/libiconv-$(libiconv-version) \
$(ibidir)/coreutils-$(coreutils-version)
# Download the tarball.
tarball=wget-$(wget-version).tar.lz
$(call import-source, $(wget-url), $(wget-checksum))
# We need to explicitly disable 'libiconv', because of the
# 'pkg-config' and 'libiconv' problem.
libs="-pthread"
if [ x$(needs_ldl) = xyes ]; then libs="$$libs -ldl"; fi
$(call gbuild, wget-$(wget-version), , \
LIBS="$$LIBS $$libs" \
--with-libssl-prefix=$(idir) \
--without-libiconv-prefix \
--with-ssl=openssl \
--with-openssl=yes \
--without-metalink \
--without-libuuid \
--without-libpsl \
--without-libidn \
--disable-pcre2 \
--disable-pcre \
--disable-iri, V=1 -j$(numthreads))
echo "GNU Wget $(wget-version)" > $@
# Basic command-line tools and their dependencies
# -----------------------------------------------
#
# These are basic programs which are commonly necessary in the build
# process of the higher-level programs and libraries. Note that during the
# building of those higher-level programs (after this Makefile finishes),
# there is no access to the system's PATH.
$(ibidir)/bison-$(bison-version): $(ibidir)/help2man-$(help2man-version)
tarball=bison-$(bison-version).tar.lz
$(call import-source, $(bison-url), $(bison-checksum))
$(call gbuild, bison-$(bison-version), static, ,V=1 -j$(numthreads))
echo "GNU Bison $(bison-version)" > $@
$(ibidir)/diffutils-$(diffutils-version): \
$(ibidir)/coreutils-$(coreutils-version)
tarball=diffutils-$(diffutils-version).tar.lz
$(call import-source, $(diffutils-url), $(diffutils-checksum))
$(call gbuild, diffutils-$(diffutils-version), static,,V=1)
echo "GNU Diffutils $(diffutils-version)" > $@
$(ibidir)/file-$(file-version): $(ibidir)/coreutils-$(coreutils-version)
export CFLAGS="-std=c99 $$CFLAGS"
tarball=file-$(file-version).tar.lz
$(call import-source, $(file-url), $(file-checksum))
$(call gbuild, file-$(file-version), static, \
--disable-libseccomp, V=1)
echo "File $(file-version)" > $@
$(ibidir)/findutils-$(findutils-version): \
$(ibidir)/coreutils-$(coreutils-version)
tarball=findutils-$(findutils-version).tar.lz
$(call import-source, $(findutils-url), $(findutils-checksum))
$(call gbuild, findutils-$(findutils-version), static,,V=1)
echo "GNU Findutils $(findutils-version)" > $@
$(ibidir)/gawk-$(gawk-version): \
$(ibidir)/gmp-$(gmp-version) \
$(ibidir)/mpfr-$(mpfr-version) \
$(ibidir)/coreutils-$(coreutils-version)
# Download the tarball.
tarball=gawk-$(gawk-version).tar.lz
$(call import-source, $(gawk-url), $(gawk-checksum))
# AWK doesn't include RPATH by default, so we'll have to manually
# include it using the 'patchelf' program (which was a dependency of
# Bash). Just note that AWK produces two executables (for example
# 'gawk-4.2.1' and 'gawk') and a symbolic link 'awk' to one of those
# executables.
$(call gbuild, gawk-$(gawk-version), static, \
--with-readline=$(idir))
# Correct the RPATH on systems that have installed patchelf.
if [ -f $(ibdir)/patchelf ]; then
if [ -f $(ibdir)/gawk ]; then
$(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/gawk
fi
if [ -f $(ibdir)/gawk-$(gawk-version) ]; then
$(ibdir)/patchelf --set-rpath $(ildir) \
$(ibdir)/gawk-$(gawk-version);
fi
fi
# Build final target.
echo "GNU AWK $(gawk-version)" > $@
$(ibidir)/help2man-$(help2man-version): \
$(ibidir)/coreutils-$(coreutils-version)
tarball=help2man-$(help2man-version).tar.lz
$(call import-source, $(help2man-url), $(help2man-checksum))
$(call gbuild, help2man-$(help2man-version), static, ,V=1)
echo "Help2man $(Help2man-version)" > $@
$(ibidir)/libiconv-$(libiconv-version): \
$(ibidir)/pkg-config-$(pkgconfig-version)
tarball=libiconv-$(libiconv-version).tar.lz
$(call import-source, $(libiconv-url), $(libiconv-checksum))
$(call gbuild, libiconv-$(libiconv-version), static)
echo "GNU libiconv $(libiconv-version)" > $@
$(ibidir)/libunistring-$(libunistring-version): \
$(ibidir)/libiconv-$(libiconv-version)
tarball=libunistring-$(libunistring-version).tar.lz
$(call import-source, $(libunistring-url), $(libunistring-checksum))
$(call gbuild, libunistring-$(libunistring-version), static,, \
-j$(numthreads))
echo "GNU libunistring $(libunistring-version)" > $@
$(ibidir)/libxml2-$(libxml2-version): $(ibidir)/patchelf-$(patchelf-version)
# The libxml2 tarball also contains Python bindings which are built
# and installed to a system directory by default. If you don't need
# the Python bindings, the easiest solution is to compile without
# Python support: './configure --without-python'. If you really need
# the Python bindings, use '--with-python-install-dir=DIR' instead.
tarball=libxml2-$(libxml2-version).tar.lz
$(call import-source, $(libxml2-url), $(libxml2-checksum))
$(call gbuild, libxml2-$(libxml2-version), static, \
--without-python, V=1)
echo "Libxml2 $(libxml2-version)" > $@
$(ibidir)/gettext-$(gettext-version): \
$(ibidir)/m4-$(m4-version) \
$(ibidir)/libxml2-$(libxml2-version) \
$(ibidir)/ncurses-$(ncurses-version) \
$(ibidir)/libiconv-$(libiconv-version) \
$(ibidir)/libunistring-$(libunistring-version)
tarball=gettext-$(gettext-version).tar.lz
$(call import-source, $(gettext-url), $(gettext-checksum))
$(call gbuild, gettext-$(gettext-version), static, \
--without-emacs, V=1 -j$(numthreads))
echo "GNU gettext $(gettext-version)" > $@
$(ibidir)/git-$(git-version): \
$(ibidir)/less-$(less-version) \
$(ibidir)/curl-$(curl-version) \
$(ibidir)/gettext-$(gettext-version) \
$(ibidir)/libiconv-$(libiconv-version)
tarball=git-$(git-version).tar.lz
if [ x$(on_mac_os) = xyes ]; then
export LDFLAGS="$$LDFLAGS -lcharset"
fi
$(call import-source, $(git-url), $(git-checksum))
$(call gbuild, git-$(git-version), static, \
--without-tcltk --with-shell=$(ibdir)/bash \
--with-iconv=$(idir), V=1 -j$(numthreads))
echo "Git $(git-version)" > $@
$(ibidir)/gmp-$(gmp-version): \
$(ibidir)/m4-$(m4-version) \
$(ibidir)/coreutils-$(coreutils-version)
tarball=gmp-$(gmp-version).tar.lz
$(call import-source, $(gmp-url), $(gmp-checksum))
$(call gbuild, gmp-$(gmp-version), static, \
--enable-cxx --enable-fat, \
-j$(numthreads))
echo "GNU Multiple Precision Arithmetic Library $(gmp-version)" > $@
# Less is useful with Git (to view the diffs within a minimal container)
# and generally to view large files easily when the project is built in a
# container with a minimal OS.
$(ibidir)/less-$(less-version): $(ibidir)/ncurses-$(ncurses-version)
tarball=less-$(less-version).tar.lz
$(call import-source, $(less-url), $(less-checksum))
# Without the '--with-regex=posix' option, the build will depend on
# PCRE (perl compatible regular expressions) which are not available
# on some systems/compilers and can cause a crash. Maneage was
# successfully built with the POSIX regular expression (regex), and
# 'less' is generally, an interactive software, not a batch-mode
# software (it is just added in 'basic.mk' because Git uses it to
# display things. Again, this is an interactive meta-operation in
# maneage (operations you only do when you are developing Maneage
# within Maneage interactively, and will not affect into the actual
# reproducible analysis!)
$(call gbuild, less-$(less-version), static, \
--with-regex=posix,-j$(numthreads))
if [ -f $(ibdir)/patchelf ]; then
$(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/less;
fi
echo "Less $(less-version)" > $@
# On Mac OS, libtool does different things, so to avoid confusion, we'll
# prefix GNU's libtool executables with 'glibtool'.
$(ibidir)/libtool-$(libtool-version): $(ibidir)/m4-$(m4-version)
tarball=libtool-$(libtool-version).tar.lz
$(call import-source, $(libtool-url), $(libtool-checksum))
$(call gbuild, libtool-$(libtool-version), static, \
--program-prefix=g, V=1 -j$(numthreads))
ln -sf $(ibdir)/glibtoolize $(ibdir)/libtoolize
echo "GNU Libtool $(libtool-version)" > $@
$(ibidir)/grep-$(grep-version): $(ibidir)/coreutils-$(coreutils-version)
tarball=grep-$(grep-version).tar.lz
$(call import-source, $(grep-url), $(grep-checksum))
$(call gbuild, grep-$(grep-version), static,, \
-j$(numthreads) V=1)
echo "GNU Grep $(grep-version)" > $@
# M4 doesn't depend on PatchELF, but just to be consistent with the
# levels/phases introduced here (where the compressors are level 1,
# PatchELF is level 2, and ...), we'll set it as a dependency.
#
# The '--with-syscmd-shell' is used as the default shell and if not given,
# 'm4' will use '/bin/sh' (which is not under Maneage control and can cause
# problems in 'high-level.mk' because it closes off the system's
# LD_LIBRARY_PATH and if the system's '/bin/sh' needs a special system
# library, the high-level programs will not be built). We are setting this
# default shell to Dash because M4 is built before our own Bash. Recall
# that Dash is built before we enter this Makefile.
$(ibidir)/m4-$(m4-version): $(ibidir)/patchelf-$(patchelf-version)
tarball=m4-$(m4-version).tar.lz
$(call import-source, $(m4-url), $(m4-checksum))
$(call gbuild, m4-$(m4-version), static, \
--with-syscmd-shell=$(ibdir)/dash, \
-j$(numthreads) V=1)
echo "GNU M4 $(m4-version)" > $@
$(ibidir)/mpfr-$(mpfr-version): $(ibidir)/gmp-$(gmp-version)
tarball=mpfr-$(mpfr-version).tar.lz
$(call import-source, $(mpfr-url), $(mpfr-checksum))
$(call gbuild, mpfr-$(mpfr-version), static)
echo "GNU Multiple Precision Floating-Point Reliably $(mpfr-version)" > $@
$(ibidir)/pkg-config-$(pkgconfig-version): $(ibidir)/patchelf-$(patchelf-version)
# Download the tarball.
tarball=pkg-config-$(pkgconfig-version).tar.lz
$(call import-source, $(pkgconfig-url), $(pkgconfig-checksum))
# An existing 'libiconv' can cause a conflict with 'pkg-config', this
# is why 'libiconv' depends on 'pkg-config'. On a clean build,
# 'pkg-config' is built first. But when we don't have a clean build
# (and 'libiconv' exists) there will be a problem. So before
# re-building 'pkg-config', we'll remove any installation of
# 'libiconv'.
rm -f $(ildir)/libiconv* $(idir)/include/iconv.h
# Some Mac OS systems may have a version of the GNU C Compiler (GCC)
# installed that doesn't support some necessary features of building
# Glib (as part of pkg-config). So to be safe, for Mac systems, we'll
# make sure it will use LLVM's Clang.
if [ x$(on_mac_os) = xyes ]; then export compiler="CC=clang"
else export compiler=""
fi
$(call gbuild, pkg-config-$(pkgconfig-version), static, \
$$compiler --with-internal-glib \
--with-pc-path=$(ildir)/pkgconfig, V=1)
echo "pkg-config $(pkgconfig-version)" > $@
$(ibidir)/sed-$(sed-version): $(ibidir)/coreutils-$(coreutils-version)
tarball=sed-$(sed-version).tar.lz
$(call import-source, $(sed-url), $(sed-checksum))
$(call gbuild, sed-$(sed-version), static,,V=1)
echo "GNU Sed $(sed-version)" > $@
$(ibidir)/texinfo-$(texinfo-version): \
$(ibidir)/perl-$(perl-version) \
$(ibidir)/gettext-$(gettext-version)
# Setting for the XS sub-package. "This is because in theory, the XS
# module could be built with a different compiler to the rest of the
# project, needing completely different flags" (part of [1])
#
# [1] https://lists.gnu.org/archive/html/bug-texinfo/2022-08/msg00068.html
export PERL="$(ibdir)/perl"
export PERL_EXT_LDFLAGS="-L$(ildir)"
export PERL_EXT_CPPFLAGS="-I$(iidir)"
# Basic build commands.
tarball=texinfo-$(texinfo-version).tar.lz
$(call import-source, $(texinfo-url), $(texinfo-checksum))
$(call gbuild, texinfo-$(texinfo-version), static)
if [ -f $(ibdir)/patchelf ]; then
$(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/info
$(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/install-info
fi
echo "GNU Texinfo $(texinfo-version)" > $@
$(ibidir)/which-$(which-version): $(ibidir)/coreutils-$(coreutils-version)
tarball=which-$(which-version).tar.lz
$(call import-source, $(which-url), $(which-checksum))
$(call gbuild, which-$(which-version), static)
echo "GNU Which $(which-version)" > $@
# GNU ISL is necessary to build GCC.
$(ibidir)/isl-$(isl-version): $(ibidir)/gmp-$(gmp-version)
tarball=isl-$(isl-version).tar.lz
$(call import-source, $(isl-url), $(isl-checksum))
if [ $(host_cc) = 1 ]; then
echo "" > $@
else
$(call gbuild, isl-$(isl-version), static, , \
V=1 -j$(numthreads))
echo "GNU Integer Set Library $(isl-version)" > $@
fi
# GNU MPC is necessary to build GCC.
$(ibidir)/mpc-$(mpc-version): $(ibidir)/mpfr-$(mpfr-version)
tarball=mpc-$(mpc-version).tar.lz
$(call import-source, $(mpc-url), $(mpc-checksum))
if [ $(host_cc) = 1 ]; then
echo "" > $@
else
$(call gbuild, mpc-$(mpc-version), static, , \
-j$(numthreads))
echo "GNU Multiple Precision Complex library" > $@
fi
# Level 5: Binutils & GCC
# -----------------------
#
# The installation of Binutils can cause problems during the build of other
# programs since it provides the linker that is used to build them
# (http://savannah.nongnu.org/bugs/?56294). However, it is necessary for
# GCC. Therefore, we'll set all other basic programs as Binutils
# prerequisites, so GCC (the almost-final basic target) ultimately just
# depends on Binutils.
$(ibidir)/binutils-$(binutils-version): \
$(ibidir)/git-$(git-version) \
$(ibidir)/isl-$(isl-version) \
$(ibidir)/mpc-$(mpc-version) \
$(ibidir)/sed-$(sed-version) \
$(ibidir)/file-$(file-version) \
$(ibidir)/gawk-$(gawk-version) \
$(ibidir)/grep-$(grep-version) \
$(ibidir)/wget-$(wget-version) \
$(ibidir)/bison-$(bison-version) \
$(ibidir)/which-$(which-version) \
$(ibidir)/libtool-$(libtool-version) \
$(ibidir)/texinfo-$(texinfo-version) \
$(ibidir)/coreutils-$(coreutils-version) \
$(ibidir)/diffutils-$(diffutils-version) \
$(ibidir)/findutils-$(findutils-version)
# Download the tarball.
tarball=binutils-$(binutils-version).tar.lz
$(call import-source, $(binutils-url), $(binutils-checksum))
# Binutils' assembler ('as') and linker ('ld') will conflict with
# other compilers. So if we don't build our own compiler, we'll use
# the host opertating system's equivalents by just making links.
if [ x$(on_mac_os) = xyes ]; then
$(call makelink,as)
$(call makelink,ar)
$(call makelink,ld)
$(call makelink,nm)
$(call makelink,ps)
$(call makelink,strip)
$(call makelink,ranlib)
echo "" > $@
else
# Build binutils with the standard 'gbuild' function.
$(call gbuild, binutils-$(binutils-version), static, \
--with-lib-path=$(sys_library_path), \
-j$(numthreads) V=1)
# The 'ld' linker of Binutils needs several '*crt*.o' files from
# the host's GNU C Library to run. On some systems these object
# files aren't installed in standard places. We defined
# 'LIBRARY_PATH' and that fixed the problem for many
# systems. However, some software (for example ImageMagick)
# over-write 'LIBRARY_PATH', therefore there is no other way than
# to put a link to these necessary files in our local build
# directory. IMPORTANT NOTE: later, when we build the GNU C Library
# in the project, we should remove this step.
if ! [ x"$(sys_library_path)" = x ]; then
for f in $(sys_library_path)/*crt*.o; do
b=$$($(ibdir)/basename $$f)
ln -sf $$f $(ildir)/$$b
done
fi
# Write the final target.
echo "GNU Binutils $(binutils-version)" > $@
fi
# We are having issues with 'libiberty' (part of GCC) on Mac. So for now,
# GCC won't be built there. Since almost no natural science paper's
# processing depends so strongly on the compiler used, for now, this isn't
# a bad assumption, but we are indeed searching for a solution.
#
# Based on the GCC manual, the GCC build can benefit from a GNU
# environment. So, we'll build GCC after building all the basic tools that
# are often used in a configure and build scripts of GCC components.
#
# Objective C and Objective C++ is necessary for installing 'matplotlib'.
#
# We are currently having problems installing GCC on macOS, so for the time
# being, if the project is being run on a macOS, we'll just set a link.
$(ibidir)/gcc-$(gcc-version): $(ibidir)/binutils-$(binutils-version)
# Function to let the users know what to do if build fails.
error_message() {
echo; echo
echo "_________________________________________________"
echo "!!!!!!!! Warning from Maneage !!!!!!!!"
echo
echo "Unfortunately building of GCC failed on this system!"
echo "Can you please copy the last ~500 lines above and post it"
echo "as a bug here (as an attached file):"
echo " https://sv.nongnu.org/support/?func=additem&group=reproduce"
echo
echo "In the meantime, please re-configure Maneage with '--host-cc'"
echo "like below so it uses your own C compiler for building the"
echo "high-level software ('-e' is to use the existing configuration):"
echo
echo " ./project configure -e --host-cc"
echo
echo "__________ SEE NOTE FROM MANEAGE ABOVE __________"
echo; exit 1
}
# Download the tarball.
tarball=gcc-$(gcc-version).tar.lz
$(call import-source, $(gcc-url), $(gcc-checksum))
# To avoid any previous build in '.local/bin' causing problems in
# this build/links of this GCC, we'll first delete all the possibly
# built/existing compilers in this project. Note that GCC also
# installs several executables like this 'x86_64-pc-linux-gnu-gcc',
# 'x86_64-pc-linux-gnu-gcc-ar' or 'x86_64-pc-linux-gnu-g++'.
rm -f $(ibdir)/*g++ $(ibdir)/cpp $(ibdir)/gfortran
rm -rf $(ildir)/gcc $(ildir)/libcc* $(ildir)/libgcc*
rm -f $(ibdir)/*gcc* $(ibdir)/gcov* $(ibdir)/cc $(ibdir)/c++
rm -rf $(ildir)/libgfortran* $(ildir)/libstdc* rm $(idir)/x86_64*
# Build (or set links) to GCC.
if [ $(host_cc) = 1 ]; then
# Put links to the host's tools in '.local/bin'. Note that some
# macOS systems have both a native clang *and* a GNU C Compiler
# (note that this is different from the "normal" macOS situation
# where 'gcc' actually points to clang, here we mean when 'gcc' is
# actually the GNU C Compiler).
#
# In such cases, the GCC isn't complete and using it will cause
# problems when building high-level tools (for example openBLAS,
# rpcsvc-proto, CMake, xlsxio, Python or Matplotlib among
# others). To avoid such situations macOSs are configured like
# this: we'll simply set 'gcc' to point to 'clang' and won't set
# 'gcc' to point to the system's 'gcc'.
#
# Also, note that LLVM's clang doesn't have a C Pre-Processor. So
# we will only put a link to the host's 'cpp' if the system is not
# macOS. On macOS systems that have a real GCC installed, having
# GNU CPP in the project build directory is known to cause problems
# with 'libX11'.
$(call makelink,gfortran)
if [ x$(on_mac_os) = xyes ]; then
$(call makelink,clang)
$(call makelink,clang++)
$(call makelink,clang,,gcc)
$(call makelink,clang++,,g++)
else
$(call makelink,cpp)
$(call makelink,gcc)
$(call makelink,g++)
fi
# We also want to have the two 'cc' and 'c++' in the build
# directory that point to the selected compiler. With the checks
# above, 'gcc' and 'g++' will point to the proper compiler, so
# we'll use them to define 'cc' and 'c++'.
$(call makelink,gcc,,cc)
$(call makelink,g++,,c++)
# Get the first line of the compiler's '--version' output and put
# that into the target (so we know want compiler was used).
ccinfo=$$(gcc --version | awk 'NR==1')
echo "C compiler (""$$ccinfo"")" > $@
else
# Mark the current directory.
current_dir=$$(pwd)
# By default 'ddir' (where GCC is decompressed and built) is in the
# RAM (on systems that support a '/dev/shm' RAM disk). This is done
# to avoid building so many small/temporary files and possibly
# harming the hard-drive or SSD. But if the RAM doesn't have enough
# space, we should use the hard-drive or SSD. During its build,
# GCC's build directory will become about 7GiB (in units of 1024^3
# bytes, for GCC 12.1.0, which corresponds to 7.5GB, in units of
# 1000^3 bytes). So at this step, we make sure that we have more
# than 12GiB before GCC starts to build. See the figure in the link
# below for GCC's RAM consumption as a function of time:
#
# https://savannah.nongnu.org/task/?16244#comment12
#
# For POSIX portability and longevity (default sizes might change),
# we use the '-P' option, and we use the environment variable
# POSIXLY_CORRECT=1, so the 'block size' is 512 bytes. We'll also
# allow for about ~0.5 GB at the start.
#
# So we need 8 GiB * 1024^3 (B/GiB) / 512 blocks/B = 16777216
# blocks, in blocks of 512 bytes.
#
# The 4th column of 'df' is the "available" space at the time of
# running, not the full space. So the 'RAM disk' that the OS
# will be using as "pretend" disk space (e.g. using 'tmpfs'; this
# is physically RAM, but appears as if it is disk space)
# during this stage of Maneage is accounted for. GCC is built
# alone - no other Maneage software is built at the same time as
# GCC - so this amount of RAM should be enough.
in_ram=$$(POSIXLY_CORRECT=1 df -P $(ddir) \
| awk 'NR==2{print ($$4>16777216) ? "yes" : "no"}'); \
if [ $$in_ram = "yes" ]; then odir=$(ddir)
else
odir=$(BDIR)/software/build-tmp-gcc-due-to-lack-of-space
if [ -d $$odir ]; then rm -rf $$odir; fi
mkdir $$odir
fi
# Go into the directory to uncompress GCC.
cd $$odir
# Unpack GCC and prepare the 'build' directory inside it for all
# the built files.
rm -rf gcc-$(gcc-version)
tar -xf $(tdir)/$$tarball
if [ $$odir != $(ddir) ]; then
ln -s $$odir/gcc-$(gcc-version) $(ddir)/gcc-$(gcc-version)
fi
cd gcc-$(gcc-version)
$(shsrcdir)/prep-source.sh $(ibdir)
# Unfortunately binutils installs headers like 'ansidecl.h' that
# have been seen to conflict with GCC's internal versions of those
# headers. For example in the 'ansidecl.h' of Binutils 2.39, the
# 'PTR' macro isn't defined, while the same file in GCC 12.1.0 has
# defined it. Therefore, without this change, GCC will include the
# file installed from Binutils, not find what it needs and crash!
# Therefore, with the 'CPPFLAGS' modification below, we tell GCC to
# first look into its own 'include' directory before anything else.
export CPPFLAGS="-I$$(pwd)/include $(CPPFLAGS)"
# In the GNU C Library 2.36 (which is more recent than GCC 12.1.0),
# the 'linux/mount.h' (loaded by 'linux/fs.h', which is loaded by
# 'libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cpp'
# in GCC) conflicts with 'sys/mount.h' which is directly loaded by
# the same file! This is a known conflict in glibc 2.36 (see
# [1]). As described in [1], one solution is the final job done in
# [2]. We therefore do this process here: 1) Not loading
# 'linux/fs.h', and adding the necessary macros directly.
#
# [1] https://sourceware.org/glibc/wiki/Release/2.36#Usage_of_.3Clinux.2Fmount.h.3E_and_.3Csys.2Fmount.h.3E
# [2] https://reviews.llvm.org/D129471
sed -e's|\#include <linux/fs.h>||' \
-e"s|FS_IOC_GETFLAGS;|_IOR('f', 1, long);|" \
-e"s|FS_IOC_GETVERSION;|_IOR('v', 1, long);|" \
-e"s|FS_IOC_SETFLAGS;|_IOW('f', 2, long);|" \
-e"s|FS_IOC_SETVERSION;|_IOW('v', 2, long);|" \
-i libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cpp
# Set the build directory for the processing.
mkdir build
cd build
# Configure, build and install GCC, if any of three steps fails,
# the error message will be printed.
if ! ../configure SHELL=$(ibdir)/bash \
--prefix=$(idir) \
--with-mpc=$(idir) \
--with-gmp=$(idir) \
--with-isl=$(idir) \
--with-mpfr=$(idir) \
--with-local-prefix=$(idir) \
--with-build-time-tools=$(idir) \
--enable-lto \
--enable-shared \
--enable-cet=auto \
--enable-default-pie \
--enable-default-ssp \
--enable-decimal-float \
--enable-threads=posix \
--enable-languages=c,c++,fortran,objc,obj-c++ \
--disable-nls \
--disable-libada \
--disable-multilib; then error_message; fi
if ! make SHELL=$(ibdir)/bash -j$(numthreads); then error_message; fi
if ! make SHELL=$(ibdir)/bash install; then error_message; fi
# We need to manually fix the RPATH inside GCC's libraries, the
# programs built by GCC already have RPATH.
tempname=$$odir/gcc-$(gcc-version)/build/rpath-temp-copy
if [ -f $(ibdir)/patchelf ]; then
# Go over all the installed GCC libraries (its executables are
# fine!).
for f in $$(find $(idir)/libexec/gcc -type f) $(ildir)/libstdc++*; do
# Make sure this is a static library, copy it to a temporary
# name (to avoid any possible usage of the file while it is
# being corrected), and add RPATH inside of it and put the
# corrected file back in its place. In the case of the standard
# C++ library, we also need to manually insert a linking to
# libiconv.
if file $$f | grep -q "dynamically linked"; then
cp $$f $$tempname
patchelf --set-rpath $(ildir) $$tempname
echo "$$f: added rpath"
if echo $$f | grep -q "libstdc++"; then
patchelf --add-needed $(ildir)/libiconv.so $$tempname
echo "$$f: linked with libiconv"
fi
mv $$tempname $$f
fi
done
fi
# Come back up to the un-packing directory and delete the GCC
# source directory.
cd ../..
rm -rf gcc-$(gcc-version)
cd $$current_dir
if [ "$$odir" != "$(ddir)" ]; then
rm -rf $$odir;
rm $(ddir)/gcc-$(gcc-version);
fi
# Set 'cc' to point to 'gcc'.
ln -sf $(ibdir)/gcc $(ibdir)/cc
ln -sf $(ibdir)/g++ $(ibdir)/c++
# Write the final target.
echo "GNU Compiler Collection (GCC) $(gcc-version)" > $@
fi
# Level 6: need re-compilation
# ----------------------------
#
# The initial build of these was done with the host's settings, which will
# cause problems later when we completely close-off the host environment.
$(ibidir)/make-$(make-version): $(ibidir)/gcc-$(gcc-version)
tarball=make-$(make-version).tar.lz
$(call import-source, $(make-url), $(make-checksum))
$(call gbuild, make-$(make-version), static, \
--disable-dependency-tracking --without-guile)
echo "GNU Make $(make-version)" > $@
$(ibidir)/lzip-$(lzip-version): $(ibidir)/gcc-$(gcc-version)
tarball=lzip-$(lzip-version).tar
unpackdir=lzip-$(lzip-version)
cd $(ddir)
rm -rf $$unpackdir
tar -xf $(tdir)/$$tarball
cd $$unpackdir
$(shsrcdir)/prep-source.sh $(ibdir)
./configure --build --check --installdir="$(ibdir)"
if [ -f $(ibdir)/patchelf ]; then
$(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/lzip;
fi
cd ..
rm -rf $$unpackdir
echo "Lzip $(lzip-version)" > $@
# Level 7: Basic text editor
# --------------------------
#
# If the project is built in a minimal environment, there is no text
# editor, making it hard to work on the project. By default a minimal
# (relatively user-friendly: GNU Nano) text editor will thus also be built
# at the end of the "basic" tools. More advanced editors (for example Emacs
# and Vim) are available as optional high-level programs. GNU Nano is a
# very light-weight and small command-line text editor (around 3.5 Mb after
# installation!).
#
# The editor is a top-level target in the basic tools (given to
# 'targets-proglib' above). Hence nothing depends on it, and it just
# depends on GCC. This is done because some projects may choose to not have
# nano (and use their own optional high-level text editor). To do this, you
# can just have to manually remove 'nano' from 'targets-proglib' above and
# add their optional text editor in 'TARGETS.conf'.
$(ibidir)/nano-$(nano-version): $(ibidir)/lzip-$(lzip-version) \
$(ibidir)/make-$(make-version)
tarball=nano-$(nano-version).tar.lz
$(call import-source, $(nano-url), $(nano-checksum))
$(call gbuild, nano-$(nano-version), static)
echo "GNU Nano $(nano-version)" > $@