From 5b008fbd6760014283d18986ae26585daf473e0f Mon Sep 17 00:00:00 2001
From: Raul Infante-Sainz <infantesainz@gmail.com>
Date: Fri, 22 Mar 2019 11:59:04 +0000
Subject: H5py added and setuptools as main Python module dependency
In this commit we add `h5py' Python package.
We also include `setuptools' as a main dependency of Python because with the
previous commit it (as well as `pip') is no longer installed with Python.
Numpy version also has been incremented.
---
reproduce/src/make/dependencies-python.mk | 63 ++++++++++++++++++-------------
reproduce/src/make/initialize.mk | 15 +++++---
2 files changed, 45 insertions(+), 33 deletions(-)
(limited to 'reproduce/src')
diff --git a/reproduce/src/make/dependencies-python.mk b/reproduce/src/make/dependencies-python.mk
index e4c2324..54d3a56 100644
--- a/reproduce/src/make/dependencies-python.mk
+++ b/reproduce/src/make/dependencies-python.mk
@@ -116,6 +116,7 @@ tarballs = $(foreach t, asn1crypto-$(asn1crypto-version).tar.gz \
cryptography-$(cryptography-version).tar.gz \
cycler-$(cycler-version).tar.gz \
entrypoints-$(entrypoints-version).tar.gz \
+ h5py-$(h5py-version).tar.gz \
html5lib-$(html5lib-version).tar.gz \
idna-$(idna-version).tar.gz \
jeepney-$(jeepney-version).tar.gz \
@@ -157,7 +158,10 @@ $(tarballs): $(tdir)/%:
# because the tokenization above will produce `python' as the
# first string.
if [ $* = python-dateutil-$(python-dateutil-version).tar.gz ]; then
- n=dateutil
+ n=dateutil
+ elif [ $* = h5py-$(h5py-version).tar.gz ]; then
+ n=h5py
+
# elif [ $* = strange-tarball5name-version.tar.gz ]; then
# n=strange5-name
else
@@ -191,13 +195,14 @@ $(tarballs): $(tdir)/%:
elif [ $$n = cryptography ]; then h=07/ca/bc827c5e55918ad223d59d299fff92f3563476c3b00d0a9157d9c0217449
elif [ $$n = cycler ]; then h=c2/4b/137dea450d6e1e3d474e1d873cd1d4f7d3beed7e0dc973b06e8e10d32488
elif [ $$n = entrypoints ]; then h=b4/ef/063484f1f9ba3081e920ec9972c96664e2edb9fdc3d8669b0e3b8fc0ad7c
+ elif [ $$n = h5py ]; then h=43/27/a6e7dcb8ae20a4dbf3725321058923fec262b6f7835179d78ccc8d98deec
elif [ $$n = html ]; then h=85/3e/cf449cf1b5004e87510b9368e7a5f1acd8831c2d6691edd3c62a0823f98f
elif [ $$n = idna ]; then h=ad/13/eb56951b6f7950cadb579ca166e448ba77f9d24efc03edd7e55fa57d04b7
elif [ $$n = jeepney ]; then h=16/1d/74adf3b164a8d19a60d0fcf706a751ffa2a1eaa8e5bbb1b6705c92a05263
elif [ $$n = keyring ]; then h=15/88/c6ce9509438bc02d54cf214923cfba814412f90c31c95028af852b19f9b2
elif [ $$n = kiwisolver ]; then h=31/60/494fcce70d60a598c32ee00e71542e52e27c978e5f8219fae0d4ac6e2864
elif [ $$n = matplotlib ]; then h=89/0c/653aec68e9cfb775c4fbae8f71011206e5e7fe4d60fcf01ea1a9d3bc957f
- elif [ $$n = numpy ]; then h=2b/26/07472b0de91851b6656cbc86e2f0d5d3a3128e7580f23295ef58b6862d6c
+ elif [ $$n = numpy ]; then h=cf/8d/6345b4f32b37945fedc1e027e83970005fc9c699068d2f566b82826515f2
elif [ $$n = pip ]; then h=4c/4d/88bc9413da11702cbbace3ccc51350ae099bb351febae8acc85fec34f9af
elif [ $$n = pycparser ]; then h=68/9e/49196946aee219aead1290e00d1e7fdeab8567783e83e1b9ab5585e6206a
elif [ $$n = pyparsing ]; then h=b9/b8/6b32b3e84014148dcd60dd05795e35c2e7f4b72f918616c61fdce83d27fc
@@ -212,7 +217,7 @@ $(tarballs): $(tdir)/%:
elif [ $$n = urllib ]; then h=b1/53/37d82ab391393565f2f831b8eedbffd57db5a718216f82f1a8b4d381a1c1
elif [ $$n = virtualenv ]; then h=51/aa/c395a6e6eaaedfa5a04723b6446a1df783b16cca6fec66e671cede514688
elif [ $$n = webencodings ]; then h=0b/02/ae6ceac1baeda530866a85075641cec12989bd8d31af6d5ab4a3e8c92f47
-# elif [ $$n = strange5-name ]; then h=XXXXX
+# elif [ $$n = strange5-name ]; then h=XXXXX
else
echo; echo; echo;
echo "'$$n' not recognized as a dependency name to download."
@@ -310,7 +315,7 @@ $(ibdir)/python3: $(tdir)/python-$(python-version).tar.gz \
#
# All the necessary Python modules go here.
$(ipydir)/asn1crypto: $(tdir)/asn1crypto-$(asn1crypto-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, asn1crypto-$(asn1crypto-version))
$(ipydir)/astroquery: $(tdir)/astroquery-$(astroquery-version).tar.gz \
@@ -323,6 +328,7 @@ $(ipydir)/astroquery: $(tdir)/astroquery-$(astroquery-version).tar.gz \
$(call pybuild, tar xf, $<, astroquery-$(astroquery-version))
$(ipydir)/astropy: $(tdir)/astropy-$(astropy-version).tar.gz \
+ $(ipydir)/h5py \
$(ipydir)/numpy
$(call pybuild, tar xf, $<, astropy-$(astropy-version))
@@ -331,80 +337,83 @@ $(ipydir)/beautifulsoup4: $(tdir)/beautifulsoup4-$(beautifulsoup4-version).tar.g
$(call pybuild, tar xf, $<, beautifulsoup4-$(beautifulsoup4-version))
$(ipydir)/certifi: $(tdir)/certifi-$(certifi-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, certifi-$(certifi-version))
$(ipydir)/cffi: $(tdir)/cffi-$(cffi-version).tar.gz \
- $(ipydir)/pycparser \
- $(ilidir)/libffi
+ $(ilidir)/libffi \
+ $(ipydir)/pycparser
$(call pybuild, tar xf, $<, cffi-$(cffi-version))
$(ipydir)/chardet: $(tdir)/chardet-$(chardet-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, chardet-$(chardet-version))
$(ipydir)/cryptography: $(tdir)/cryptography-$(cryptography-version).tar.gz \
- $(ipydir)/cffi \
- $(ipydir)/asn1crypto
+ $(ipydir)/asn1crypto \
+ $(ipydir)/cffi
$(call pybuild, tar xf, $<, cryptography-$(cryptography-version))
$(ipydir)/cycler: $(tdir)/cycler-$(cycler-version).tar.gz \
- $(ipydir)/six
+ $(ipydir)/six
$(call pybuild, tar xf, $<, cycler-$(cycler-version))
$(ipydir)/entrypoints: $(tdir)/entrypoints-$(entrypoints-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, entrypoints-$(entrypoints-version))
+$(ipydir)/h5py: $(tdir)/h5py-$(h5py-version).tar.gz \
+ $(ipydir)/setuptools
+ $(call pybuild, tar xf, $<, h5py-$(h5py-version))
+
$(ipydir)/html5lib: $(tdir)/html5lib-$(html5lib-version).tar.gz \
$(ipydir)/six \
$(ipydir)/webencodings
$(call pybuild, tar xf, $<, html5lib-$(html5lib-version))
$(ipydir)/idna: $(tdir)/idna-$(idna-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, idna-$(idna-version))
$(ipydir)/jeepney: $(tdir)/jeepney-$(jeepney-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, jeepney-$(jeepney-version))
$(ipydir)/keyring: $(tdir)/keyring-$(keyring-version).tar.gz \
- $(ipydir)/setuptools_scm \
+ $(ipydir)/entrypoints \
$(ipydir)/secretstorage \
- $(ipydir)/entrypoints
+ $(ipydir)/setuptools_scm
$(call pybuild, tar xf, $<, keyring-$(keyring-version))
$(ipydir)/kiwisolver: $(tdir)/kiwisolver-$(kiwisolver-version).tar.gz \
$(ipydir)/setuptools
$(call pybuild, tar xf, $<, kiwisolver-$(kiwisolver-version))
-
$(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \
$(ipydir)/cycler \
$(ilidir)/freetype \
+ $(ipydir)/kiwisolver \
$(ipydir)/numpy \
$(ipydir)/pyparsing \
- $(ipydir)/python-dateutil \
- $(ipydir)/kiwisolver
+ $(ipydir)/python-dateutil
$(call pybuild, tar xf, $<, matplotlib-$(matplotlib-version))
$(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \
- $(ibdir)/python3
+ $(ipydir)/setuptools
export LDFLAGS="$$LDFLAGS -shared"; \
conf="$$(pwd)/reproduce/config/pipeline/dependency-numpy-scipy.cfg"; \
$(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf)
$(ibdir)/pip3: $(tdir)/pip-$(pip-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, pip-$(pip-version))
$(ipydir)/pycparser: $(tdir)/pycparser-$(pycparser-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, pycparser-$(pycparser-version))
$(ipydir)/pyparsing: $(tdir)/pyparsing-$(pyparsing-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, pyparsing-$(pyparsing-version))
$(ipydir)/python-dateutil: $(tdir)/python-dateutil-$(python-dateutil-version).tar.gz \
@@ -440,17 +449,17 @@ $(ipydir)/setuptools_scm: $(tdir)/setuptools_scm-$(setuptools_scm-version).tar.g
$(call pybuild, tar xf, $<, setuptools_scm-$(setuptools_scm-version))
$(ipydir)/six: $(tdir)/six-$(six-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, six-$(six-version))
$(ipydir)/soupsieve: $(tdir)/soupsieve-$(soupsieve-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, soupsieve-$(soupsieve-version))
$(ipydir)/urllib3: $(tdir)/urllib3-$(urllib3-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, urllib3-$(urllib3-version))
$(ipydir)/webencodings: $(tdir)/webencodings-$(webencodings-version).tar.gz \
- $(ibdir)/python3
+ $(ipydir)/setuptools
$(call pybuild, tar xf, $<, webencodings-$(webencodings-version))
diff --git a/reproduce/src/make/initialize.mk b/reproduce/src/make/initialize.mk
index 545fcc1..66e7c77 100644
--- a/reproduce/src/make/initialize.mk
+++ b/reproduce/src/make/initialize.mk
@@ -369,10 +369,6 @@ $(mtexdir)/initialize.tex: | $(mtexdir)
echo "\newcommand{\\grepversion}{$(grep-version)}" >> $@
echo "\newcommand{\\gzipversion}{$(gzip-version)}" >> $@
echo "\newcommand{\\islversion}{$(isl-version)}" >> $@
- echo "\newcommand{\\libbsdversion}{$(libbsd-version)}" >> $@
- echo "\newcommand{\\libffiversion}{$(libffi-version)}" >> $@
- echo "\newcommand{\\libpngversion}{$(libpng-version)}" >> $@
- echo "\newcommand{\\libtoolversion}{$(libtool-version)}" >> $@
echo "\newcommand{\\lzipversion}{$(lzip-version)}" >> $@
echo "\newcommand{\\makeversion}{$(make-version)}" >> $@
echo "\newcommand{\\metastoreversion}{$(metastore-version)}" >> $@
@@ -394,12 +390,18 @@ $(mtexdir)/initialize.tex: | $(mtexdir)
echo "\newcommand{\\zipversion}{$(zip-version)}" >> $@
# Libraries.
+ echo "\newcommand{\\atlasversion}{$(cfitsio-version)}" >> $@
echo "\newcommand{\\cfitsioversion}{$(cfitsio-version)}" >> $@
echo "\newcommand{\\curlversion}{$(curl-version)}" >> $@
echo "\newcommand{\\gslversion}{$(gsl-version)}" >> $@
+ echo "\newcommand{\\lapack}{$(lapack-version)}" >> $@
+ echo "\newcommand{\\libbsdversion}{$(libbsd-version)}" >> $@
+ echo "\newcommand{\\libffiversion}{$(libffi-version)}" >> $@
echo "\newcommand{\\libgittwoversion}{$(libgit2-version)}" >> $@
echo "\newcommand{\\libjpegversion}{$(libjpeg-version)}" >> $@
+ echo "\newcommand{\\libpngversion}{$(libpng-version)}" >> $@
echo "\newcommand{\\libtiffversion}{$(libtiff-version)}" >> $@
+ echo "\newcommand{\\libtoolversion}{$(libtool-version)}" >> $@
echo "\newcommand{\\wcslibversion}{$(wcslib-version)}" >> $@
echo "\newcommand{\\zlibversion}{$(zlib-version)}" >> $@
@@ -414,8 +416,9 @@ $(mtexdir)/initialize.tex: | $(mtexdir)
echo "\newcommand{\\cryptographyversion}{$(cryptography-version)}" >> $@
echo "\newcommand{\\cyclerversion}{$(cycler-version)}" >> $@
echo "\newcommand{\\entrypointsversion}{$(entrypoints-version)}" >> $@
+ echo "\newcommand{\\hpyversion}{$(h5py-version)}" >> $@
echo "\newcommand{\\htmlfivelibversion}{$(html5lib-version)}" >> $@
- echo "\newcommand{\\indaversion}{$(idna-version)}" >> $@
+ echo "\newcommand{\\idaversion}{$(idna-version)}" >> $@
echo "\newcommand{\\jeepneyversion}{$(jeepney-version)}" >> $@
echo "\newcommand{\\kiwisolverversion}{$(kiwisolver-version)}" >> $@
echo "\newcommand{\\keyringversion}{$(keyring-version)}" >> $@
@@ -433,7 +436,7 @@ $(mtexdir)/initialize.tex: | $(mtexdir)
echo "\newcommand{\\sixversion}{$(six-version)}" >> $@
echo "\newcommand{\\soupsieveversion}{$(soupsieve-version)}" >> $@
echo "\newcommand{\\urllibthreeversion}{$(urllib3-version)}" >> $@
- echo "\newcommand{\\virtualenvversion}{$(virtualenv-version)}" >> $@
+# echo "\newcommand{\\virtualenvversion}{$(virtualenv-version)}" >> $@
echo "\newcommand{\\webencodingsversion}{$(webencodings-version)}" >> $@
# TeX package versions
--
cgit v1.2.1