From ac80e3bc163a177c5b33ad2a1b8ab9f6f09becd8 Mon Sep 17 00:00:00 2001
From: Mohammad Akhlaghi <mohammad@akhlaghi.org>
Date: Sat, 14 Dec 2019 04:28:47 +0000
Subject: Core R package is now in template

With this commit, we now have the core R interpretter within the
template. We should later include instructions to install R packages
(possibly in a separate top-level Makefile like Python).
---
 reproduce/software/config/installation/checksums.mk |  1 +
 reproduce/software/config/installation/versions.mk  |  1 +
 reproduce/software/make/high-level.mk               | 14 ++++++++++++++
 3 files changed, 16 insertions(+)

(limited to 'reproduce/software')

diff --git a/reproduce/software/config/installation/checksums.mk b/reproduce/software/config/installation/checksums.mk
index 1a56016..999d057 100644
--- a/reproduce/software/config/installation/checksums.mk
+++ b/reproduce/software/config/installation/checksums.mk
@@ -115,6 +115,7 @@ openmpi-checksum = 760716974cb6b25ad820184622e1ee7926bc6fda87db6b574f76792bc1ca9
 openssh-checksum = e280fa2d56f550efd37c5d2477670326261aa8b94d991f9eb17aad90e0c6c9c939efa90fe87d33260d0f709485cb05c379f0fd1bd44fc0d5190298b6398c9982
 pixman-checksum = 1b0205dbe9d9185c68813ce577a889f3c83e83fbd9955c3a72d411c3b476e6be93fc246b5b6ef4ee17e2bb8eb6fb5559e01dff7feb6a6c4c6314f980e960d690
 python-checksum = c25a72ad792f7c1b4c2f79faebbe9608d04b04b2fe58ab804cb4732cdaa75ea93d175f5e52b38e91cb6ae0559ea6b645d802c8b6a869584e8bb9b5018367ce3d
+R-checksum = 17513e9f4dd27c61c11f7aa45227aeeeefb375bf5d4e193b471724f379a1b2da33e127cbe91aa175cbbbb048b892047e2f610280585c8159242a6c94790b07f9
 rpcsvc-proto-checksum = c3011d7d7ef97a4a751f6921df1a23e1dd8ac50fb0690c759d37010ed7be27968a2130e3b8872cb48d5914216f9d539096a424f1ec38a75f7ed899748151c6f4
 scamp-checksum = 35034a367d2cd09dc51e727e0f23ef6234edc0d978fd71cda1e80391d86af160138cb57281f7f7f9047e35b1246a0de6b235414086a62524413ed423f498583f
 scons-checksum = 0477038b014674049f12899b64584d44a85283d521b2422561e42020a5ae296a5af005684087c3ff410ed3fcbdcc5ff61998bc429eb29513f2a864138ffc4945
diff --git a/reproduce/software/config/installation/versions.mk b/reproduce/software/config/installation/versions.mk
index 97a5e1a..05fa631 100644
--- a/reproduce/software/config/installation/versions.mk
+++ b/reproduce/software/config/installation/versions.mk
@@ -111,6 +111,7 @@ openmpi-version = 4.0.1
 openssh-version = 8.0p1
 pixman-version = 0.38.0
 python-version = 3.7.4
+R-version = 3.6.2
 rpcsvc-proto-version = 1.4
 scamp-version = 2.6.7
 scons-version = 3.0.5
diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk
index 56af4b9..f6c2f76 100644
--- a/reproduce/software/make/high-level.mk
+++ b/reproduce/software/make/high-level.mk
@@ -171,6 +171,7 @@ tarballs = $(foreach t, apachelog4cxx-$(apachelog4cxx-version).tar.lz \
                         openmpi-$(openmpi-version).tar.gz \
                         openssh-$(openssh-version).tar.gz \
                         pixman-$(pixman-version).tar.gz \
+                        R-$(R-version).tar.gz \
                         scamp-$(scamp-version).tar.lz \
                         scons-$(scons-version).tar.gz \
                         sextractor-$(sextractor-version).tar.lz \
@@ -267,6 +268,9 @@ $(tarballs): $(tdir)/%: | $(lockdir)
 	  w=https://download.open-mpi.org/release/open-mpi/v$$majorver/$*
 	elif [ $$n = openssh     ]; then c=$(openssh-checksum); w=https://artfiles.org/openbsd/OpenSSH/portable
 	elif [ $$n = pixman      ]; then c=$(pixman-checksum); w=https://www.cairographics.org/releases
+	elif [ $$n = R           ]; then c=$(R-checksum);
+	  majver=$$(echo $(R-version) | sed -e's/\./ /g' | awk '{print $$1}')
+	  w=https://cran.r-project.org/src/base/R-$$majver
 	elif [ $$n = rpcsvc      ]; then c=$(rpcsvc-proto-checksum); w=https://github.com/thkukuk/rpcsvc-proto/releases/download/v$(rpcsvc-proto-version)
 	elif [ $$n = scamp       ]; then c=$(scamp-checksum); w=http://akhlaghi.org/reproduce-software
 	elif [ $$n = scons       ]; then
@@ -1024,6 +1028,16 @@ $(ibidir)/netpbm: $(ibidir)/unzip \
 	&& rm -rf $$unpackdir \
 	&& echo "Netpbm $(netpbm-version)" > $@
 
+# R programming language
+$(ibidir)/R: $(ibidir)/libpng \
+             $(ibidir)/libjpeg \
+             $(ibidir)/libtiff \
+             | $(tdir)/R-$(R-version).tar.gz
+	export R_SHELL=$(SHELL); \
+	$(call gbuild, R-$(R-version), static, \
+                       --without-x --with-readline) \
+	&& echo "R $(R-version)" > $@
+
 # SCAMP documentation says ATLAS is a mandatory prerequisite for using
 # SCAMP. We have ATLAS into the project but there are some problems with the
 # libraries that are not yet solved. However, we tried to install it with
-- 
cgit v1.2.1