From b3b44798a3f472e5f5a6633de4a582d4c902b008 Mon Sep 17 00:00:00 2001 From: Mohammad Akhlaghi Date: Thu, 18 Jun 2020 18:01:33 +0100 Subject: IMPORTANT: New software versions (17 basic, 16 high-level and 7 Python) It was a long time that the Maneage software versions hadn't been updated. With this commit, the versions of all basic software were checked and 17 of that had newer versions were updated. Also, 16 high-level programs and libraries were updated as well as 7 Python modules. The full list is available below. Basic Software (affecting all projects) --------------------------------------- bash 5.0.11 -> 5.0.18 binutils 2.32 -> 2.35 coreutils 8.31 -> 8.32 curl 7.65.3 -> 7.71.1 file 5.36 -> 5.39 gawk 5.0.1 -> 5.1.0 gcc 9.2.0 -> 10.2.0 gettext 0.20.2 -> 0.21 git 2.26.2 -> 2.28.0 gmp 6.1.2 -> 6.2.0 grep 3.3 -> 3.4 libbsd 0.9.1 -> 0.10.0 ncurses 6.1 -> 6.2 perl 5.30.0 -> 5.32.0 sed 4.7 -> 4.8 texinfo 6.6 -> 6.7 xz 5.2.4 -> 5.2.5 Custom programs/libraries ------------------------- astrometrynet 0.77 -> 0.80 automake 0.16.1 -> 0.16.2 bison 3.6 -> 3.7 cfitsio 3.47 -> 3.48 cmake 3.17.0 -> 3.18.1 freetype 2.9 -> 2.10.2 gdb 8.3 -> 9.2 ghostscript 9.50 -> 9.52 gnuastro 0.11 -> 0.12 libgit2 0.28.2 -> 1.0.1 libidn 1.35 -> 1.36 openmpi 4.0.1 -> 4.0.4 R 3.6.2 -> 4.0.2 python 3.7.4 -> 3.8.5 wcslib 6.4 -> 7.3 yaml 0.2.2 -> 0.2.5 Python modules -------------- cython 0.29.6 -> 0.29.21 h5py 2.9.0 -> 2.10.0 matplotlib 3.1.1 -> 3.3.0 mpi4py 3.0.2 -> 3.0.3 numpy 1.17.2 -> 1.19.1 pybind11 2.4.3 -> 2.5.0 scipy 1.3.1 -> 1.5.2 --- reproduce/software/config/versions.conf | 85 +++++++++++++++++---------------- 1 file changed, 44 insertions(+), 41 deletions(-) (limited to 'reproduce/software/config/versions.conf') diff --git a/reproduce/software/config/versions.conf b/reproduce/software/config/versions.conf index 7998345..0a9e21e 100644 --- a/reproduce/software/config/versions.conf +++ b/reproduce/software/config/versions.conf @@ -16,24 +16,24 @@ # -------------------------------------------------------------- # # CLASS:BASIC (important identifier, don't modify this line) -bash-version = 5.0.11 -binutils-version = 2.32 -coreutils-version = 8.31 -curl-version = 7.65.3 +bash-version = 5.0.18 +binutils-version = 2.35 +coreutils-version = 8.32 +curl-version = 7.71.1 dash-version = 0.5.10.2 diffutils-version = 3.7 -file-version = 5.36 +file-version = 5.39 findutils-version = 4.7.0 flock-version = 0.2.3 -gawk-version = 5.0.1 -gcc-version = 9.2.0 -gettext-version = 0.20.2 -git-version = 2.26.2 -gmp-version = 6.1.2 -grep-version = 3.3 +gawk-version = 5.1.0 +gcc-version = 10.2.0 +gettext-version = 0.21 +git-version = 2.28.0 +gmp-version = 6.2.0 +grep-version = 3.4 gzip-version = 1.10 isl-version = 0.18 -libbsd-version = 0.9.1 +libbsd-version = 0.10.0 libiconv-version = 1.16 libtool-version = 2.4.6 libunistring-version = 0.9.10 @@ -44,18 +44,18 @@ make-version = 4.3 metastore-version = 1.1.2-23-fa9170b mpc-version = 1.1.0 mpfr-version = 4.0.2 -ncurses-version = 6.1 +ncurses-version = 6.2 patchelf-version = 0.10 -perl-version = 5.30.0 +perl-version = 5.32.0 pkgconfig-version = 0.29.2 readline-version = 8.0 -sed-version = 4.7 +sed-version = 4.8 tar-version = 1.32 -texinfo-version = 6.6 +texinfo-version = 6.7 unzip-version = 6.0 wget-version = 1.20.3 which-version = 2.21 -xz-version = 5.2.4 +xz-version = 5.2.5 zip-version = 3.0 zlib-version = 1.2.11 @@ -83,35 +83,34 @@ bzip2-version = 1.0.6 apachelog4cxx-version = 0.10.0-603-014954db apr-version = 1.7.0 apr-util-version = 1.6.1 -astrometrynet-version = 0.77 +astrometrynet-version = 0.80 atlas-version = 3.10.3 autoconf-version = 2.69.200-babc -automake-version = 1.16.1 -bison-version = 3.6 +automake-version = 1.16.2 +bison-version = 3.7 boost-version = 1.73.0 cairo-version = 1.16.0 cdsclient-version = 3.84 -cfitsio-version = 3.47 -cmake-version = 3.17.0 +cfitsio-version = 3.48 +cmake-version = 3.18.1 eigen-version = 3.3.7 expat-version = 2.2.9 fftw-version = 3.3.8 flex-version = 2.6.4-91-ga631f5d -freetype-version = 2.9 -gdb-version = 8.3 -ghostscript-version = 9.50 +freetype-version = 2.10.2 +gdb-version = 9.2 +ghostscript-version = 9.52 ghostscript-fonts-gnu-version = 6.0 ghostscript-fonts-std-version = 8.11 -gnuastro-version = 0.11 +gnuastro-version = 0.12 gperf-version = 3.1 gsl-version = 2.6 -hdf5-version = 1.10.5 healpix-version = 3.50 help2man-version = 1.47.11 imagemagick-version = 7.0.8-67 imfit-version = 1.6.1 libffi-version = 3.2.1 -libidn-version = 1.35 +libidn-version = 1.36 libjpeg-version = v9b libnsl-version = 1.2.0-4a062cf libpaper-version = 1.1.28 @@ -120,13 +119,13 @@ libtiff-version = 4.0.10 libtirpc-version = 1.2.6 missfits-version = 2.8.0 openblas-version = 0.3.10 -openmpi-version = 4.0.1 +openmpi-version = 4.0.4 openssh-version = 8.0p1 patch-version = 2.7.6 pcre-version = 8.44 pixman-version = 0.38.0 -python-version = 3.7.4 -R-version = 3.6.2 +python-version = 3.8.5 +R-version = 4.0.2 rpcsvc-proto-version = 1.4 scamp-version = 2.6.7 scons-version = 3.0.5 @@ -136,7 +135,7 @@ swig-version = 3.0.12 tides-version = 2.0 util-linux-version = 2.35 xlsxio-version = 0.2.21 -yaml-version = 0.2.2 +yaml-version = 0.2.5 # Xorg packages util-macros-version = 1.19.2 @@ -157,8 +156,8 @@ libpthread-stubs-version = 0.4 # Version-dependent build # ----------------------- lapack-version = 3.8.0 -libgit2-version = 0.28.2 -wcslib-version = 6.4 +libgit2-version = 1.0.1 +wcslib-version = 7.3 # Netpbm's questions in the configure steps maybe change with different or # new versions. @@ -177,6 +176,9 @@ openssl-version = 1.1.1a # any future release. valgrind-version = 3.15.0 +# Be careful with updateing hdf5 because h5py 2.10.0 doesn't work with +# version 1.12.0. +hdf5-version = 1.10.5 @@ -202,7 +204,7 @@ chardet-version = 3.0.4 corner-version = 2.0.1 cryptography-version = 2.6.1 cycler-version = 0.10.0 -cython-version = 0.29.6 +cython-version = 0.29.21 eigency-version = 1.77 emcee-version = 3.0.1 entrypoints-version = 0.3 @@ -210,7 +212,7 @@ esutil-version = 0.6.4 flake8-version = 3.7.8 future-version = 0.18.1 galsim-version = 2.2.1 -h5py-version = 2.9.0 +h5py-version = 2.10.0 html5lib-version = 1.0.1 idna-version = 2.8 jeepney-version = 0.4 @@ -218,22 +220,22 @@ keyring-version = 18.0.0 kiwisolver-version = 1.0.1 lmfit-version = 0.9.14 lsstdesccoord-version = 1.2.0 -matplotlib-version = 3.1.1 -mpi4py-version = 3.0.2 +matplotlib-version = 3.3.0 +mpi4py-version = 3.0.3 mpmath-version = 1.1.0 -numpy-version = 1.17.2 +numpy-version = 1.19.1 pexpect-version = 4.7.0 pip-version = 19.0.2 pycodestyle-version = 2.5.0 pycparser-version = 2.19 pyflakes-version = 2.1.1 -pybind11-version = 2.4.3 +pybind11-version = 2.5.0 pyparsing-version = 2.3.1 pypkgconfig-version = 1.5.1 python-dateutil-version = 2.8.0 pyyaml-version = 5.1 requests-version = 2.21.0 -scipy-version = 1.3.1 +scipy-version = 1.5.2 secretstorage-version = 3.1.1 setuptools-version = 41.6.0 setuptools_scm-version = 3.3.3 @@ -249,3 +251,4 @@ webencodings-version = 0.5.1 # # Healpy: When any Python module is requested, healpix will also build its # Python module Healpy. +healpy-version = xxxxx -- cgit v1.2.1