From 5b008fbd6760014283d18986ae26585daf473e0f Mon Sep 17 00:00:00 2001
From: Raul Infante-Sainz <infantesainz@gmail.com>
Date: Fri, 22 Mar 2019 11:59:04 +0000
Subject: H5py added and setuptools as main Python module dependency

In this commit we add `h5py' Python package.

We also include `setuptools' as a main dependency of Python because with the
previous commit it (as well as `pip') is no longer installed with Python.

Numpy version also has been incremented.
---
 paper.tex | 40 +++++++++++++++++++++++++---------------
 1 file changed, 25 insertions(+), 15 deletions(-)

(limited to 'paper.tex')

diff --git a/paper.tex b/paper.tex
index 16f6eb8..860996f 100644
--- a/paper.tex
+++ b/paper.tex
@@ -202,23 +202,33 @@ SUNDIAL ITN, and from the Spanish Ministry of Economy and Competitiveness
 (MINECO) under grant number AYA2016-76219-P.
 
 The following free software tools were also critical component of this
-research (in alphabetical order): Bzip2 \bziptwoversion, CFITSIO
-\cfitsioversion, CMake \cmakeversion, cURL \curlversion, Discoteq flock
-\flockversion, Git \gitversion, GNU Astronomy Utilities \gnuastroversion,
-GNU AWK \gawkversion, GNU Bash \bashversion, GNU Coreutils
-\coreutilsversion, GNU Diffutils \diffutilsversion, GNU Findutils
-\findutilsversion, GNU Grep \grepversion, GNU Gzip \gzipversion, GNU
-Libtool \libtoolversion, GNU Make \makeversion, GNU NCURSES
-\ncursesversion, GNU Readline \readlineversion, GNU Sed \sedversion, GNU
-Scientific Library (GSL) \gslversion, GNU Tar \tarversion, GNU Wget
-\wgetversion, GNU Which \whichversion, Lzip \lzipversion, GPL Ghostscript
-\ghostscriptversion, Libbsd \libbsdversion, Libgit2 \libgitwoversion,
-Libjpeg \libjpegversion, Libtiff \libtiffversion, Metastore (forked)
-\metastoreversion, OpenSSL \opensslversion, Pkg-config \pkgconfigversion,
+research (in alphabetical order): ATLAS \atlasversion, Bzip2
+\bziptwoversion, CFITSIO \cfitsioversion, CMake \cmakeversion, cURL
+\curlversion, Discoteq flock \flockversion, FreeType \freetypeversion, Git
+\gitversion, GNU Astronomy Utilities \gnuastroversion, GNU AWK \gawkversion,
+GNU Bash \bashversion, GNU Coreutils \coreutilsversion, GNU Diffutils
+\diffutilsversion, GNU Findutils \findutilsversion, GNU Grep \grepversion,
+GNU Gzip \gzipversion, GNU Libtool \libtoolversion, GNU Make \makeversion,
+GNU NCURSES \ncursesversion, GNU Readline \readlineversion, GNU Sed
+\sedversion, GNU Scientific Library (GSL) \gslversion, GNU Tar \tarversion,
+GNU Wget \wgetversion, GNU Which \whichversion, Lapack \lapackversion, Lzip
+\lzipversion, GPL Ghostscript \ghostscriptversion, Libbsd \libbsdversion,
+Libgit2 \libgitwoversion, Libjpeg \libjpegversion, Libpng \libpngversion,
+Libtiff \libtiffversion, Metastore (forked) \metastoreversion, OpenSSL
+\opensslversion, Patchelf \patchelfversion, Pkg-config \pkgconfigversion,
 Unzip \unzipversion, WCSLIB \wcslibversion, XZ Utils \xzversion, Zip
 \zipversion, and ZLib \zlibversion. We use Python {\pythonversion} with the
-following packages: Numpy {\numpyversion} and Astropy {\astropyversion}
-\citep{astropy2013, astropy2018}. The final paper was produced with
+following packages: Asn1crypto \asncryptoversion, Astroquery
+\astroqueryversion, Astropy {\astropyversion} \citep{astropy2013,
+astropy2018}, BeautifulSoup \beautifulsoupversion, Certifi \certifiversion,
+Cffi \cffiversion, Chardet \chardetversion, Cryptography
+\cryptographyversion, Cycler \cyclerversion, EntryPoints
+\entrypointsversion, h5py \hpyversion, html5ib \htmlfivelibversion, idna
+\idnaversion, Jeepney \jeepneyversion, Kiwisolver \kiwisolverversion,
+keyring \keyringversion, Matplotlib \matplotlibversion,  Numpy \numpyversion
+
+
+  The final paper was produced with
 \TeX{} Live \texliveversion, using the following packages: \TeX{}
 \textexversion, EC \texecversion, NewTX \texnewtxversion, Fontaxes
 \texfontaxesversion, Keyval, \texxkeyvalversion, Etoolbox
-- 
cgit v1.2.1


From 30e422bdebaee600ef3b5ebc6313429760d88004 Mon Sep 17 00:00:00 2001
From: Raul Infante-Sainz <infantesainz@gmail.com>
Date: Fri, 22 Mar 2019 16:46:03 +0000
Subject: Acknowledged new software in paper

In the previous commit I already have included the latex macros.
In this commit we use them in the paper source.
---
 paper.tex | 26 ++++++++++++++------------
 1 file changed, 14 insertions(+), 12 deletions(-)

(limited to 'paper.tex')

diff --git a/paper.tex b/paper.tex
index df00ad8..013fc23 100644
--- a/paper.tex
+++ b/paper.tex
@@ -202,7 +202,7 @@ SUNDIAL ITN, and from the Spanish Ministry of Economy and Competitiveness
 (MINECO) under grant number AYA2016-76219-P.
 
 The following free software tools were also critical component of this
-esearch (in alphabetical order): ATLAS \atlasversion, Bzip2
+research (in alphabetical order): ATLAS \atlasversion, Bzip2
 \bziptwoversion, CFITSIO \cfitsioversion, CMake \cmakeversion, cURL
 \curlversion, Discoteq flock \flockversion, FreeType \freetypeversion, Git
 \gitversion, GNU Astronomy Utilities \gnuastroversion, GNU AWK \gawkversion,
@@ -225,15 +225,17 @@ Cffi \cffiversion, Chardet \chardetversion, Cryptography
 \cryptographyversion, Cycler \cyclerversion, EntryPoints
 \entrypointsversion, h5py \hpyversion, html5ib \htmlfivelibversion, idna
 \idnaversion, Jeepney \jeepneyversion, Kiwisolver \kiwisolverversion,
-keyring \keyringversion, Matplotlib \matplotlibversion,  Numpy \numpyversion
-
-
-  The final paper was produced with
-\TeX{} Live \texliveversion, using the following packages: \TeX{}
-\textexversion, EC \texecversion, NewTX \texnewtxversion, Fontaxes
-\texfontaxesversion, Keyval, \texxkeyvalversion, Etoolbox
-\texetoolboxversion, Xcolor \texxcolorversion, Setspace
-\texsetspaceversion, Caption \texcaptionversion, Footmisc
+keyring \keyringversion, Matplotlib \matplotlibversion, Numpy \numpyversion,
+pycparser \pycparserversion, PyParsing \pyparsingversion, python-dateutil
+\pythondateutilversion, Requests \requestsversion, Scipy \scipyversion,
+ScreenStorage \screenstorageversion, Setuptools \setuptoolsversion,
+Setuptools-scm \setuptoolsscmversion, Six \sixversion, SoupSieve
+\soupsieveversion, urllib3 \urllibthreeversion and webencondings
+\webencondingsversion. The final paper was produced with \TeX{} Live
+\texliveversion, using the following packages: \TeX{} \textexversion, EC
+\texecversion, NewTX \texnewtxversion, Fontaxes \texfontaxesversion, Keyval,
+\texxkeyvalversion, Etoolbox \texetoolboxversion, Xcolor \texxcolorversion,
+Setspace \texsetspaceversion, Caption \texcaptionversion, Footmisc
 \texfootmiscversion, Datetime \texdatetimeversion, Fmtcount
 \texfmtcountversion, Titlesec \textitlesecversion, Preprint
 \texpreprintversion, Ulem \texulemversion, Bib\LaTeX{} \texbiblatexversion,
@@ -241,8 +243,8 @@ Biber \texbiberversion, Logreq \texlogreqversion, PGF/TiKZ \texpgfversion,
 PGFPlots \texpgfplotsversion, FP \texfpversion, Courier \texcourierversion,
 \TeX-gyre \textexgyreversion, TXFonts \textxfontsversion, Times
 \textimesversion. We are very grateful to all their creators for freely
-providing this necessary infrastructure. This research would not be
-possible without them.
+providing this necessary infrastructure. This research would not be possible
+without them.
 
 %% Tell BibLaTeX to put the bibliography list here.
 \printbibliography
-- 
cgit v1.2.1

