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2019-06-29Added citation for TIDES, sorted progs alphabeticallyMohammad Akhlaghi-0/+19
While reviewing Prasenjit's commits, I noticed that we had forgot to add the citation for TIDES, also to make things clear, the program/library build rules are now sorted alphabetically. Finally, I noticed that after building the TiKZ PDF figures, it is crashing (like on Prasenjit's computer). After looking around, I noticed its because we were setting the of the `TEXINPUTS' environment variable to be the installed TeX Live directory (which was ultimately redundant because by default TeX will look into where it was installed). The important thing is just that we remove any possible value the host system has, not to set new directories.
2019-05-27Added paper citation of ImfitRaul Infante-Sainz-0/+24
Until this commit, `imfit' paper was not included into the acknowledgements. With this commit, a bib tex file for `imfit' has been added. So, now it is properly cited into the final paper.
2019-04-24Added copyright notice for sip_tpv.texMohammad Akhlaghi-1/+7
The BibTeX data for `sip_tpv' didn't have a copyright notice, so one was added for it.
2019-04-24Added paper citation of sip_tpv Python packageRaul Infante-Sainz-0/+16
Until now, we were not citing the paper of `sip_tpv' package. With this commit, we have been fix this issue.
2019-04-23Python package SymPy added into the templateRaul Infante-Sainz-0/+23
With this commit, we add `sympy' Python package into the template. This is a package to do symbolic mathematics. The motivation is that it is a prerequisite of `sip_tpv' Python package, which is useful to convert SIP distorsion coefficients into PV coefficients (in the context of astronomical images). However, the availability of `sympy' in the template will be useful for anyone interested in this package.
2019-04-22SCAMP and cdsclient have been added into the projectRaul Infante-Sainz-0/+18
With this commit, we add SCAMP into the project. This program is part of the Astromatic software and the main purpose is to make the fine astrometry and the distorsion correction astronomical images. In principle, SCAMP needs ATLAS library to be able to work (that is what the documentation says). However, we had some problems with ATLAS libraries on Mac OS system, and due to that, we set the option `--enable-openblas' in the configure step. By doing that, we are be able to install SCAMP with no problems. One dependency of SCAMP is `cdsclient', it has been also added with this commit. The `cdsclient' package is a set of C and shell routines which can be built on Unix stations or PCs running Linux, which once compiled allow to query some databases located at CDS or on mirrors over the network.
2019-04-17SExtractor is now included into the projectRaul Infante-Sainz-0/+18
With this commit, we add SExtractor to be installed into the project. It is a widely used program to detect object and build catalogues from astronomical images. We had some problems when installing it because it could not link with some ATLAS libraries. But, since we have OpenBLAS installed, we can use it to override the problem with ATLAS.
2019-04-17Corrected bibtex entry for Astrometry-net and SwarpRaul Infante-Sainz-11/+10
Until now, there were erros in the citation of Astrometry-net and Scamp papers. With this commit, we fix these problems. The Swarp bibtex has also been modify to follow the stetic of the citation style we have right now in the project. We also added the `dependency-bib.tex' as a prerequisite of `paper.bbl'.
2019-04-17SWarp is now into the pipelineRaul Infante-Sainz-25/+39
SWarp resamples and co-adds together FITS images using any arbitrary astrometric projection defined in the WCS standard. It is a very useful program for astronomy and that is why we added it to the pipeline. With this commit, we also cite the paper for Astrometry-net that until now was missing.
2019-04-16Astrometry-net and all its dependencies are now in the projectRaul Infante-Sainz-0/+25
With this commit, we include Astrometry-net software and one remaining dependency of it (Swig). In principle it should work as far as we tested all of this software in GNU/Linux, but we need to test also in Mac OS. As a result, this commit is just for setting all the rules and dependencies, but more tests are necessaries to ensure it works properly, specially in Mac OS systems.
2019-04-15New architecture to separate software-building and analysis stepsMohammad Akhlaghi-0/+260
Until now, the software building and analysis steps of the pipeline were intertwined. However, these steps (of how to build a software, and how to use it) are logically completely independent. Therefore with this commit, the pipeline now has a new architecture (particularly in the `reproduce' directory) to emphasize this distinction: The `reproduce' directory now has the two `software' and `analysis' subdirectories and the respective parts of the previous architecture have been broken up between these two based on their function. There is also no more `src' directory. The `config' directory for software and analysis is now mixed with the language-specific directories. Also, some of the software versions were also updated after some checks with their webpages. This new architecture will allow much more focused work on each part of the pipeline (to install the software and to run them for an analysis).