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While trying the pipeline on a remote server (which runs on Debian), the
configure script had an `Syntax error: "(" unexpected' error. This is
caused by the fact that in the Debian world (and its derivate OSs), the
default shell is not Bash but Dash which has much fewer features for fast
loading. It was thus necessary to start the configure script explicity with
the `/bin/bash' shebang.
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The README file didn't match the current way to set the top-level
directories (through `./configure'), it was still the old-fashioned way of
manually finding and opening the file. The explanation is now corrected.
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The first commit didn't have an explanation on correcting the title of the
project in the final PDF or the top-level Makefile, so a pointer was added
to the list. Also, some extra dependencies were removed from `README' and
its paragraphs were scaled to the new width of 75 characters that is
defined in `.dir-locals.el' (for Emacs settings, taken from Gnuastro).
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Let's start working on this pipeline independently with this first
commit. It is based on my previous experiences, but I had never made a
skeleton of a pipeline before, it was always within a working analysis.
But now that the pipeline has a separate repository for its self, we will
be able to work on it and use it as a base for future work and modify it to
make it even better. Hopefully in time (and with the help of others), it
will grow and become much more robust and useful.
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