diff options
Diffstat (limited to 'reproduce/software/make/python.mk')
| -rw-r--r-- | reproduce/software/make/python.mk | 410 |
1 files changed, 226 insertions, 184 deletions
diff --git a/reproduce/software/make/python.mk b/reproduce/software/make/python.mk index 14e7b75..9b107f0 100644 --- a/reproduce/software/make/python.mk +++ b/reproduce/software/make/python.mk @@ -63,16 +63,19 @@ python-major-version = $(shell echo $(python-version) | awk 'BEGIN{FS="."} \ # another format, we'll do the modification before the download so the # downloaded file has our desired format. pytarballs = $(foreach t, asn1crypto-$(asn1crypto-version).tar.gz \ + asteval-$(asteval-version).tar.gz \ astroquery-$(astroquery-version).tar.gz \ astropy-$(astropy-version).tar.gz \ beautifulsoup4-$(beautifulsoup4-version).tar.gz \ certifi-$(certifi-version).tar.gz \ cffi-$(cffi-version).tar.gz \ chardet-$(chardet-version).tar.gz \ + corner-$(corner-version).tar.gz \ cryptography-$(cryptography-version).tar.gz \ cycler-$(cycler-version).tar.gz \ cython-$(cython-version).tar.gz \ eigency-$(eigency-version).tar.gz \ + emcee-$(emcee-version).tar.gz \ esutil-$(esutil-version).tar.gz \ entrypoints-$(entrypoints-version).tar.gz \ flake8-$(flake8-version).tar.gz \ @@ -85,6 +88,7 @@ pytarballs = $(foreach t, asn1crypto-$(asn1crypto-version).tar.gz \ kiwisolver-$(kiwisolver-version).tar.gz \ keyring-$(keyring-version).tar.gz \ libffi-$(libffi-version).tar.gz \ + lmfit-$(lmfit-version).tar.gz \ lsstdesccoord-$(lsstdesccoord-version).tar.gz \ matplotlib-$(matplotlib-version).tar.gz \ mpi4py-$(mpi4py-version).tar.gz \ @@ -109,6 +113,7 @@ pytarballs = $(foreach t, asn1crypto-$(asn1crypto-version).tar.gz \ six-$(six-version).tar.gz \ soupsieve-$(soupsieve-version).tar.gz \ sympy-$(sympy-version).tar.gz \ + uncertainties-$(uncertainties-version).tar.gz \ urllib3-$(urllib3-version).tar.gz \ webencodings-$(webencodings-version).tar.gz \ virtualenv-$(virtualenv-version).tar.gz \ @@ -178,15 +183,18 @@ $(pytarballs): $(tdir)/%: hash=a6/89/df343dbc2957a317127e7ff2983230dc5336273be34f2e1911519d85aeb5 h=$(pytopurl)/$$hash/SecretStorage-$(secretstorage-version).tar.gz elif [ $$n = asn ]; then h=fc/f1/8db7daa71f414ddabfa056c4ef792e1461ff655c2ae2928a2b675bfed6b4; c=$(asn1crypto-checksum) + elif [ $$n = asteval ]; then h=50/3f/29b7935c6dc09ee96dc347edc66c57e8ef68d595dd35b763a36a117acc8c; c=$(asteval-checksum) elif [ $$n = astroquery ]; then h=61/50/a7a08f9e54d7d9d97e69433cd88231e1ad2901811c9d1ae9ac7ccaef9396; c=$(astroquery-checksum) elif [ $$n = astropy ]; then h=b9/10/523355eb8cb9839552c8f0fbc9425a1c87c8ff2e55f4df85469a5a4164d3; c=$(astropy-checksum) elif [ $$n = beautifulsoup ]; then h=80/f2/f6aca7f1b209bb9a7ef069d68813b091c8c3620642b568dac4eb0e507748; c=$(beautifulsoup4-checksum) elif [ $$n = certifi ]; then h=55/54/3ce77783acba5979ce16674fc98b1920d00b01d337cfaaf5db22543505ed; c=$(certifi-checksum) elif [ $$n = cffi ]; then h=64/7c/27367b38e6cc3e1f49f193deb761fe75cda9f95da37b67b422e62281fcac; c=$(cffi-checksum) elif [ $$n = chardet ]; then h=fc/bb/a5768c230f9ddb03acc9ef3f0d4a3cf93462473795d18e9535498c8f929d; c=$(chardet-checksum) + elif [ $$n = corner ]; then h=65/af/a7ba022f2d5787f51db91b5550cbe8e8c40a6eebd8f15119e743a09a9c19; c=$(corner-checksum) elif [ $$n = cryptography ]; then h=07/ca/bc827c5e55918ad223d59d299fff92f3563476c3b00d0a9157d9c0217449; c=$(cryptography-checksum) elif [ $$n = cycler ]; then h=c2/4b/137dea450d6e1e3d474e1d873cd1d4f7d3beed7e0dc973b06e8e10d32488; c=$(cycler-checksum) elif [ $$n = eigency ]; then h=fb/6e/bc4359fbfb0bb0b588ec328251b0d0836bdd7c0a4c568959ea06df023e18; c=$(eigency-checksum) + elif [ $$n = emcee ]; then h=f0/c0/cd433f2aedeef9b1e5ed7d236c82564f7518fe7fe2238fa141ea9ce08e73; c=$(emcee-checksum) elif [ $$n = entrypoints ]; then h=b4/ef/063484f1f9ba3081e920ec9972c96664e2edb9fdc3d8669b0e3b8fc0ad7c; c=$(entrypoints-checksum) elif [ $$n = esutil ]; then h=5b/91/77e38282fd3d47b55e351544ab179eb209b309a8d2d40f8cdb6241beda00; c=$(esutil-checksum) elif [ $$n = flake ]; then h=8d/a7/99222c9200af533c1ecb1120d99adbd1c033b57296ac5cb39d121db007a8; c=$(flake8-checksum) @@ -197,6 +205,7 @@ $(pytarballs): $(tdir)/%: elif [ $$n = jeepney ]; then h=16/1d/74adf3b164a8d19a60d0fcf706a751ffa2a1eaa8e5bbb1b6705c92a05263; c=$(jeepney-checksum) elif [ $$n = keyring ]; then h=15/88/c6ce9509438bc02d54cf214923cfba814412f90c31c95028af852b19f9b2; c=$(keyring-checksum) elif [ $$n = kiwisolver ]; then h=31/60/494fcce70d60a598c32ee00e71542e52e27c978e5f8219fae0d4ac6e2864; c=$(kiwisolver-checksum) + elif [ $$n = lmfit ]; then h=59/6e/117794cf85b7345361877e49245870490ae438f1981dea3c6af1316b30e7; c=$(lmfit-checksum) elif [ $$n = matplotlib ]; then h=12/d1/7b12cd79c791348cb0c78ce6e7d16bd72992f13c9f1e8e43d2725a6d8adf; c=$(matplotlib-checksum) elif [ $$n = mpi ]; then h=04/f5/a615603ce4ab7f40b65dba63759455e3da610d9a155d4d4cece1d8fd6706; c=$(mpi4py-checksum) elif [ $$n = mpmath ]; then h=ca/63/3384ebb3b51af9610086b23ea976e6d27d6d97bf140a76a365bd77a3eb32; c=$(mpmath-checksum) @@ -212,12 +221,13 @@ $(pytarballs): $(tdir)/%: elif [ $$n = requests ]; then h=52/2c/514e4ac25da2b08ca5a464c50463682126385c4272c18193876e91f4bc38; c=$(requests-checksum) elif [ $$n = scipy ]; then h=ee/5b/5afcd1c46f97b3c2ac3489dbc95d6ca28eacf8e3634e51f495da68d97f0f; c=$(scipy-checksum) elif [ $$n = secretstorage ]; then h=a6/89/df343dbc2957a317127e7ff2983230dc5336273be34f2e1911519d85aeb5; c=$(secretstorage-checksum) - elif [ $$n = setuptools ]; then h=c2/f7/c7b501b783e5a74cf1768bc174ee4fb0a8a6ee5af6afa92274ff964703e0; c=$(setuptools-checksum) - elif [ $$n = setuptools_scm ]; then h=54/85/514ba3ca2a022bddd68819f187ae826986051d130ec5b972076e4f58a9f3; c=$(setuptools_scm-checksum) + elif [ $$n = setuptools ]; then h=11/0a/7f13ef5cd932a107cd4c0f3ebc9d831d9b78e1a0e8c98a098ca17b1d7d97; c=$(setuptools-checksum) + elif [ $$n = setuptools_scm ]; then h=83/44/53cad68ce686585d12222e6769682c4bdb9686808d2739671f9175e2938b; c=$(setuptools_scm-checksum) elif [ $$n = six ]; then h=dd/bf/4138e7bfb757de47d1f4b6994648ec67a51efe58fa907c1e11e350cddfca; c=$(six-checksum) elif [ $$n = sip_tpv ]; then h=27/93/a973aab2a3bf0c12cb385611819710921e13b090304c6bd015026cf9c502; c=$(sip_tpv-checksum) elif [ $$n = soupsieve ]; then h=0c/52/e9088bb9b96e2d39fc3b33fcda5b4fde9d71473536ac660a1ca9a0958a2f; c=$(soupsieve-checksum) elif [ $$n = sympy ]; then h=54/2e/6adb11fe599d4cfb7e8833753350ac51aa2c0603c226b36f9051cc9d2425; c=$(sympy-checksum) + elif [ $$n = uncertainties ]; then h=2a/c2/babbe5b16141859dd799ed31c03987100a7b6d0ca7c0ed4429c96ce60fdf; c=$(uncertainties-checksum) elif [ $$n = urllib ]; then h=b1/53/37d82ab391393565f2f831b8eedbffd57db5a718216f82f1a8b4d381a1c1; c=$(urllib3-checksum) elif [ $$n = virtualenv ]; then h=51/aa/c395a6e6eaaedfa5a04723b6446a1df783b16cca6fec66e671cede514688; c=$(virtualenv-checksum) elif [ $$n = webencodings ]; then h=0b/02/ae6ceac1baeda530866a85075641cec12989bd8d31af6d5ab4a3e8c92f47; c=$(webencodings-checksum) @@ -285,15 +295,16 @@ $(ibidir)/libffi: $(tdir)/libffi-$(libffi-version).tar.gz fi \ && echo "Libffi $(libffi-version)" > $@ -$(ibidir)/python: $(tdir)/python-$(python-version).tar.gz \ - $(ibidir)/libffi +$(ibidir)/python: $(ibidir)/libffi \ + $(tdir)/python-$(python-version).tar.gz # On Mac systems, the build complains about `clang' specific # features, so we can't use our own GCC build here. if [ x$(on_mac_os) = xyes ]; then \ export CC=clang; \ export CXX=clang++; \ fi; \ - $(call gbuild, $<, Python-$(python-version),, \ + $(call gbuild, $(filter $(tdir)/%,$^), \ + Python-$(python-version),, \ --without-ensurepip \ --with-system-ffi \ --enable-shared) \ @@ -315,27 +326,28 @@ $(ibidir)/python: $(tdir)/python-$(python-version).tar.gz \ # access to `setup.py' is needed, pip can be used). # Arguments of this function are the numbers # 1) Unpack command -# 2) Package name -# 3) Unpacked directory name after unpacking the tarball -# 4) site.cfg file (optional) -# 5) Official software name.(for paper). -# 6) Manual step after installation. -pybuild = cd $(ddir); rm -rf $(3); \ - if ! $(1) $(2); then echo; echo "Tar error"; exit 1; fi; \ - cd $(3); \ - if [ "x$(strip $(4))" != x ]; then \ +# 2) Unpacked directory name after unpacking the tarball +# 3) site.cfg file (optional). +# 4) Official software name (for paper). +# 5) Manual step after installation. +pybuild = cd $(ddir); rm -rf $(2); \ + if ! $(1) $(filter $(tdir)/%,$^); then \ + echo; echo "Tar error"; exit 1; \ + fi; \ + cd $(2); \ + if [ "x$(strip $(3))" != x ]; then \ sed -e 's|@LIBDIR[@]|'"$(ildir)"'|' \ -e 's|@INCDIR[@]|'"$(idir)/include"'|' \ - $(4) > site.cfg; \ + $(3) > site.cfg; \ fi; \ - if [ x"$(6)" = x ]; then after="echo no after"; \ - else after="$(6)"; fi \ + if [ x"$(5)" = x ]; then after="echo no after"; \ + else after="$(5)"; fi \ && python setup.py build \ && python setup.py install \ && $$after \ && cd .. \ - && rm -rf $(3) \ - && echo "$(5)" > $@ + && rm -rf $(2) \ + && echo "$(4)" > $@ @@ -345,114 +357,131 @@ pybuild = cd $(ddir); rm -rf $(3); \ # --------------- # # All the necessary Python modules go here. -$(ipydir)/asn1crypto: $(tdir)/asn1crypto-$(asn1crypto-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, asn1crypto-$(asn1crypto-version), , \ +$(ipydir)/asn1crypto: $(ipydir)/setuptools \ + $(tdir)/asn1crypto-$(asn1crypto-version).tar.gz \ + $(call pybuild, tar xf, asn1crypto-$(asn1crypto-version), , \ Asn1crypto $(asn1crypto-version)) -$(ipydir)/astroquery: $(tdir)/astroquery-$(astroquery-version).tar.gz \ - $(ipydir)/beautifulsoup4 \ - $(ipydir)/html5lib \ - $(ipydir)/requests \ +$(ipydir)/asteval: $(ipydir)/numpy \ + $(tdir)/asteval-$(asteval-version).tar.gz + $(call pybuild, tar xf, asteval-$(asteval-version), , \ + ASTEVAL $(asteval-version)) + +$(ipydir)/astroquery: $(ipydir)/numpy \ $(ipydir)/astropy \ $(ipydir)/keyring \ - $(ipydir)/numpy - $(call pybuild, tar xf, $<, astroquery-$(astroquery-version), ,\ + $(ipydir)/html5lib \ + $(ipydir)/requests \ + $(ipydir)/beautifulsoup4 \ + $(tdir)/astroquery-$(astroquery-version).tar.gz + $(call pybuild, tar xf, astroquery-$(astroquery-version), ,\ Astroquery $(astroquery-version)) -$(ipydir)/astropy: $(tdir)/astropy-$(astropy-version).tar.gz \ - $(ipydir)/h5py \ +$(ipydir)/astropy: $(ipydir)/h5py \ + $(ipydir)/scipy \ $(ipydir)/numpy \ - $(ipydir)/scipy - $(call pybuild, tar xf, $<, astropy-$(astropy-version)) \ + $(tdir)/astropy-$(astropy-version).tar.gz + $(call pybuild, tar xf, astropy-$(astropy-version)) \ && cp $(dtexdir)/astropy.tex $(ictdir)/ \ && echo "Astropy $(astropy-version) \citep{astropy2013,astropy2018}" > $@ -$(ipydir)/beautifulsoup4: $(tdir)/beautifulsoup4-$(beautifulsoup4-version).tar.gz \ - $(ipydir)/soupsieve - $(call pybuild, tar xf, $<, beautifulsoup4-$(beautifulsoup4-version), ,\ +$(ipydir)/beautifulsoup4: $(ipydir)/soupsieve \ + $(tdir)/beautifulsoup4-$(beautifulsoup4-version).tar.gz + $(call pybuild, tar xf, beautifulsoup4-$(beautifulsoup4-version), ,\ BeautifulSoup $(beautifulsoup4-version)) -$(ipydir)/certifi: $(tdir)/certifi-$(certifi-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, certifi-$(certifi-version), ,\ +$(ipydir)/certifi: $(ipydir)/setuptools \ + $(tdir)/certifi-$(certifi-version).tar.gz + $(call pybuild, tar xf, certifi-$(certifi-version), ,\ Certifi $(certifi-version)) -$(ipydir)/cffi: $(tdir)/cffi-$(cffi-version).tar.gz \ +$(ipydir)/cffi: $(ibidir)/libffi \ $(ipydir)/pycparser \ - $(ibidir)/libffi - $(call pybuild, tar xf, $<, cffi-$(cffi-version), ,\ + $(tdir)/cffi-$(cffi-version).tar.gz + $(call pybuild, tar xf, cffi-$(cffi-version), ,\ cffi $(cffi-version)) -$(ipydir)/chardet: $(tdir)/chardet-$(chardet-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, chardet-$(chardet-version), ,\ +$(ipydir)/chardet: $(ipydir)/setuptools \ + $(tdir)/chardet-$(chardet-version).tar.gz + $(call pybuild, tar xf, chardet-$(chardet-version), ,\ Chardet $(chardet-version)) -$(ipydir)/cryptography: $(tdir)/cryptography-$(cryptography-version).tar.gz \ +$(ipydir)/corner: $(ipydir)/matplotlib \ + $(tdir)/corner-$(corner-version).tar.gz + $(call pybuild, tar xf, corner-$(corner-version), ,\ + Corner $(corner-version)) \ + && cp $(dtexdir)/corner.tex $(ictdir)/ \ + && echo "Corner $(corner-version) \citep{corner}" > $@ + +$(ipydir)/cryptography: $(ipydir)/cffi \ $(ipydir)/asn1crypto \ - $(ipydir)/cffi - $(call pybuild, tar xf, $<, cryptography-$(cryptography-version), ,\ + $(tdir)/cryptography-$(cryptography-version).tar.gz + $(call pybuild, tar xf, cryptography-$(cryptography-version), ,\ Cryptography $(cryptography-version)) -$(ipydir)/cycler: $(tdir)/cycler-$(cycler-version).tar.gz \ - $(ipydir)/six - $(call pybuild, tar xf, $<, cycler-$(cycler-version), ,\ +$(ipydir)/cycler: $(ipydir)/six \ + $(tdir)/cycler-$(cycler-version).tar.gz + $(call pybuild, tar xf, cycler-$(cycler-version), ,\ Cycler $(cycler-version)) -$(ipydir)/cython: $(tdir)/cython-$(cython-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, Cython-$(cython-version)) \ +$(ipydir)/cython: $(ipydir)/setuptools \ + $(tdir)/cython-$(cython-version).tar.gz + $(call pybuild, tar xf, Cython-$(cython-version)) \ && cp $(dtexdir)/cython.tex $(ictdir)/ \ && echo "Cython $(cython-version) \citep{cython2011}" > $@ -$(ipydir)/esutil: $(tdir)/esutil-$(esutil-version).tar.gz \ - $(ipydir)/numpy - $(call pybuild, tar xf, $<, esutil-$(esutil-version), ,\ +$(ipydir)/esutil: $(ipydir)/numpy \ + $(tdir)/esutil-$(esutil-version).tar.gz + $(call pybuild, tar xf, esutil-$(esutil-version), ,\ esutil $(esutil-version)) -$(ipydir)/eigency: $(tdir)/eigency-$(eigency-version).tar.gz \ - $(ibidir)/eigen - $(call pybuild, tar xf, $<, eigency-$(eigency-version), ,\ +$(ipydir)/eigency: $(ibidir)/eigen \ + $(tdir)/eigency-$(eigency-version).tar.gz + $(call pybuild, tar xf, eigency-$(eigency-version), ,\ eigency $(eigency-version)) -$(ipydir)/entrypoints: $(tdir)/entrypoints-$(entrypoints-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, entrypoints-$(entrypoints-version), ,\ +$(ipydir)/emcee: $(ipydir)/numpy \ + $(ipydir)/setuptools_scm \ + $(tdir)/emcee-$(emcee-version).tar.gz + $(call pybuild, tar xf, emcee-$(emcee-version), ,\ + emcee $(emcee-version)) + +$(ipydir)/entrypoints: $(ipydir)/setuptools \ + $(tdir)/entrypoints-$(entrypoints-version).tar.gz + $(call pybuild, tar xf, entrypoints-$(entrypoints-version), ,\ EntryPoints $(entrypoints-version)) -$(ipydir)/flake8: $(tdir)/flake8-$(flake8-version).tar.gz \ +$(ipydir)/flake8: $(ipydir)/pyflakes \ $(ipydir)/pycodestyle \ - $(ipydir)/pyflakes - $(call pybuild, tar xf, $<, flake8-$(flake8-version), ,\ + $(tdir)/flake8-$(flake8-version).tar.gz + $(call pybuild, tar xf, flake8-$(flake8-version), ,\ Flake8 $(flake8-version)) -$(ipydir)/future: $(tdir)/future-$(future-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, future-$(future-version), ,\ +$(ipydir)/future: $(ipydir)/setuptools \ + $(tdir)/future-$(future-version).tar.gz + $(call pybuild, tar xf, future-$(future-version), ,\ Future $(future-version)) -$(ipydir)/galsim: $(tdir)/galsim-$(galsim-version).tar.gz \ - $(ipydir)/lsstdesccoord \ - $(ipydir)/pybind11 \ +$(ipydir)/galsim: $(ipydir)/future \ $(ipydir)/astropy \ $(ipydir)/eigency \ - $(ipydir)/future - $(call pybuild, tar xf, $<, GalSim-$(galsim-version), ,) \ + $(ipydir)/pybind11 \ + $(ipydir)/lsstdesccoord \ + $(tdir)/galsim-$(galsim-version).tar.gz + $(call pybuild, tar xf, GalSim-$(galsim-version), ,) \ && cp $(dtexdir)/galsim.tex $(ictdir)/ \ && echo "Galsim $(galsim-version) \citep{galsim}" > $@ -$(ipydir)/h5py: $(tdir)/h5py-$(h5py-version).tar.gz \ - $(ipydir)/pypkgconfig \ - $(ipydir)/setuptools \ +$(ipydir)/h5py: $(ipydir)/six \ + $(ibidir)/hdf5 \ + $(ipydir)/numpy \ $(ipydir)/cython \ $(ipydir)/mpi4py \ - $(ipydir)/numpy \ - $(ibidir)/hdf5 \ - $(ipydir)/six + $(ipydir)/pypkgconfig \ + $(tdir)/h5py-$(h5py-version).tar.gz export HDF5_MPI=ON; \ export HDF5_DIR=$(ildir); \ - $(call pybuild, tar xf, $<, h5py-$(h5py-version), ,\ + $(call pybuild, tar xf, h5py-$(h5py-version), ,\ h5py $(h5py-version)) # `healpy' is actually installed as part of the HEALPix package. It will be @@ -465,201 +494,214 @@ $(ipydir)/h5py: $(tdir)/h5py-$(h5py-version).tar.gz \ $(ipydir)/healpy: $(ibidir)/healpix touch $@ -$(ipydir)/html5lib: $(tdir)/html5lib-$(html5lib-version).tar.gz \ +$(ipydir)/html5lib: $(ipydir)/six \ $(ipydir)/webencodings \ - $(ipydir)/six - $(call pybuild, tar xf, $<, html5lib-$(html5lib-version), ,\ + $(tdir)/html5lib-$(html5lib-version).tar.gz + $(call pybuild, tar xf, html5lib-$(html5lib-version), ,\ HTML5lib $(html5lib-version)) -$(ipydir)/idna: $(tdir)/idna-$(idna-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, idna-$(idna-version), ,\ +$(ipydir)/idna: $(ipydir)/setuptools \ + $(tdir)/idna-$(idna-version).tar.gz + $(call pybuild, tar xf, idna-$(idna-version), ,\ idna $(idna-version)) -$(ipydir)/jeepney: $(tdir)/jeepney-$(jeepney-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, jeepney-$(jeepney-version), ,\ +$(ipydir)/jeepney: $(ipydir)/setuptools \ + $(tdir)/jeepney-$(jeepney-version).tar.gz \ + $(call pybuild, tar xf, jeepney-$(jeepney-version), ,\ Jeepney $(jeepney-version)) -$(ipydir)/keyring: $(tdir)/keyring-$(keyring-version).tar.gz \ - $(ipydir)/setuptools_scm \ +$(ipydir)/keyring: $(ipydir)/entrypoints \ $(ipydir)/secretstorage \ - $(ipydir)/entrypoints - $(call pybuild, tar xf, $<, keyring-$(keyring-version), ,\ + $(ipydir)/setuptools_scm \ + $(tdir)/keyring-$(keyring-version).tar.gz + $(call pybuild, tar xf, keyring-$(keyring-version), ,\ Keyring $(keyring-version)) -$(ipydir)/kiwisolver: $(tdir)/kiwisolver-$(kiwisolver-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, kiwisolver-$(kiwisolver-version), ,\ +$(ipydir)/kiwisolver: $(ipydir)/setuptools \ + $(tdir)/kiwisolver-$(kiwisolver-version).tar.gz + $(call pybuild, tar xf, kiwisolver-$(kiwisolver-version), ,\ Kiwisolver $(kiwisolver-version)) -$(ipydir)/lsstdesccoord: $(tdir)/lsstdesccoord-$(lsstdesccoord-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, LSSTDESC.Coord-$(lsstdesccoord-version), ,\ +$(ipydir)/lmfit: $(ipydir)/six \ + $(ipydir)/scipy \ + $(ipydir)/emcee \ + $(ipydir)/corner \ + $(ipydir)/asteval \ + $(ipydir)/matplotlib \ + $(ipydir)/uncertainties \ + $(tdir)/lmfit-$(lmfit-version).tar.gz + $(call pybuild, tar xf, lmfit-$(lmfit-version), ,\ + LMFIT $(lmfit-version)) + +$(ipydir)/lsstdesccoord: $(ipydir)/setuptools \ + $(tdir)/lsstdesccoord-$(lsstdesccoord-version).tar.gz + $(call pybuild, tar xf, LSSTDESC.Coord-$(lsstdesccoord-version), ,\ LSSTDESC.Coord $(lsstdesccoord-version)) -$(ipydir)/matplotlib: $(tdir)/matplotlib-$(matplotlib-version).tar.gz \ - $(ipydir)/python-dateutil \ +$(ipydir)/matplotlib: $(ipydir)/numpy \ + $(ipydir)/cycler \ + $(itidir)/texlive \ + $(ibidir)/freetype \ + $(ipydir)/pyparsing \ + $(ipydir)/kiwisolver \ $(ibidir)/ghostscript \ $(ibidir)/imagemagick \ - $(ipydir)/kiwisolver \ - $(ipydir)/pyparsing \ - $(ibidir)/freetype \ - $(itidir)/texlive \ - $(ipydir)/cycler \ - $(ipydir)/numpy - $(call pybuild, tar xf, $<, matplotlib-$(matplotlib-version)) \ + $(ipydir)/python-dateutil \ + $(tdir)/matplotlib-$(matplotlib-version).tar.gz + $(call pybuild, tar xf, matplotlib-$(matplotlib-version)) \ && cp $(dtexdir)/matplotlib.tex $(ictdir)/ \ && echo "Matplotlib $(matplotlib-version) \citep{matplotlib2007}" > $@ -$(ipydir)/mpi4py: $(tdir)/mpi4py-$(mpi4py-version).tar.gz \ +$(ipydir)/mpi4py: $(ibidir)/openmpi \ $(ipydir)/setuptools \ - $(ibidir)/openmpi - $(call pybuild, tar xf, $<, mpi4py-$(mpi4py-version)) \ + $(tdir)/mpi4py-$(mpi4py-version).tar.gz + $(call pybuild, tar xf, mpi4py-$(mpi4py-version)) \ && cp $(dtexdir)/mpi4py.tex $(ictdir)/ \ && echo "mpi4py $(mpi4py-version) \citep{mpi4py2011}" > $@ -$(ipydir)/mpmath: $(tdir)/mpmath-$(mpmath-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, mpmath-$(mpmath-version), ,\ +$(ipydir)/mpmath: $(ipydir)/setuptools \ + $(tdir)/mpmath-$(mpmath-version).tar.gz + $(call pybuild, tar xf, mpmath-$(mpmath-version), ,\ mpmath $(mpmath-version)) -$(ipydir)/numpy: $(tdir)/numpy-$(numpy-version).zip \ - $(ipydir)/setuptools \ +$(ipydir)/numpy: $(ibidir)/unzip \ $(ibidir)/openblas \ - $(ibidir)/unzip + $(ipydir)/setuptools \ + $(tdir)/numpy-$(numpy-version).zip if [ x$(on_mac_os) = xyes ]; then \ export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \ else \ export LDFLAGS="$(LDFLAGS) -shared"; \ fi; \ conf="$$(pwd)/reproduce/software/config/installation/numpy-scipy.cfg"; \ - $(call pybuild, unzip, $<, numpy-$(numpy-version),$$conf, \ + $(call pybuild, unzip, numpy-$(numpy-version),$$conf, \ Numpy $(numpy-version)) \ && cp $(dtexdir)/numpy.tex $(ictdir)/ \ && echo "Numpy $(numpy-version) \citep{numpy2011}" > $@ -$(ibidir)/pip3: $(tdir)/pip-$(pip-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, pip-$(pip-version), ,\ +$(ibidir)/pip3: $(ipydir)/setuptools \ + $(tdir)/pip-$(pip-version).tar.gz + $(call pybuild, tar xf, pip-$(pip-version), ,\ PiP $(pip-version)) -$(ipydir)/pycodestyle: $(tdir)/pycodestyle-$(pycodestyle-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, pycodestyle-$(pycodestyle-version), ,\ +$(ipydir)/pycodestyle: $(ipydir)/setuptools \ + $(tdir)/pycodestyle-$(pycodestyle-version).tar.gz + $(call pybuild, tar xf, pycodestyle-$(pycodestyle-version), ,\ pycodestyle $(pycodestyle-version)) -$(ipydir)/pybind11: $(tdir)/pybind11-$(pybind11-version).tar.gz \ - $(ipydir)/setuptools \ +$(ipydir)/pybind11: $(ibidir)/eigen \ $(ibidir)/boost \ - $(ibidir)/eigen - $(call pybuild, tar xf, $<, pybind11-$(pybind11-version), ,\ + $(ipydir)/setuptools \ + $(tdir)/pybind11-$(pybind11-version).tar.gz + $(call pybuild, tar xf, pybind11-$(pybind11-version), ,\ pybind11 $(pybind11-version), cp -r include/pybind11 $(iidir)/python$(python-major-version)m/) -$(ipydir)/pycparser: $(tdir)/pycparser-$(pycparser-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, pycparser-$(pycparser-version), ,\ +$(ipydir)/pycparser: $(ipydir)/setuptools \ + $(tdir)/pycparser-$(pycparser-version).tar.gz + $(call pybuild, tar xf, pycparser-$(pycparser-version), ,\ pycparser $(pycparser-version)) -$(ipydir)/pyflakes: $(tdir)/pyflakes-$(pyflakes-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, pyflakes-$(pyflakes-version), ,\ +$(ipydir)/pyflakes: $(ipydir)/setuptools \ + $(tdir)/pyflakes-$(pyflakes-version).tar.gz + $(call pybuild, tar xf, pyflakes-$(pyflakes-version), ,\ pyflakes $(pyflakes-version)) -$(ipydir)/pyparsing: $(tdir)/pyparsing-$(pyparsing-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, pyparsing-$(pyparsing-version), ,\ +$(ipydir)/pyparsing: $(ipydir)/setuptools \ + $(tdir)/pyparsing-$(pyparsing-version).tar.gz + $(call pybuild, tar xf, pyparsing-$(pyparsing-version), ,\ PyParsing $(pyparsing-version)) -$(ipydir)/pypkgconfig: $(tdir)/pkgconfig-$(pypkgconfig-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, pkgconfig-$(pypkgconfig-version), , +$(ipydir)/pypkgconfig: $(ipydir)/setuptools \ + $(tdir)/pkgconfig-$(pypkgconfig-version).tar.gz + $(call pybuild, tar xf, pkgconfig-$(pypkgconfig-version), , pkgconfig $(pypkgconfig-version)) -$(ipydir)/python-dateutil: $(tdir)/python-dateutil-$(python-dateutil-version).tar.gz \ +$(ipydir)/python-dateutil: $(ipydir)/six \ $(ipydir)/setuptools_scm \ - $(ipydir)/six - $(call pybuild, tar xf, $<, python-dateutil-$(python-dateutil-version), ,\ + $(tdir)/python-dateutil-$(python-dateutil-version).tar.gz + $(call pybuild, tar xf, python-dateutil-$(python-dateutil-version), ,\ python-dateutil $(python-dateutil-version)) -$(ipydir)/pyyaml: $(tdir)/pyyaml-$(pyyaml-version).tar.gz \ - $(ibidir)/yaml \ +$(ipydir)/pyyaml: $(ibidir)/yaml \ $(ipydir)/cython \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, PyYAML-$(pyyaml-version), ,\ + $(tdir)/pyyaml-$(pyyaml-version).tar.gz + $(call pybuild, tar xf, PyYAML-$(pyyaml-version), ,\ PyYAML $(pyyaml-version)) -$(ipydir)/requests: $(tdir)/requests-$(requests-version).tar.gz \ +$(ipydir)/requests: $(ipydir)/idna \ + $(ipydir)/numpy \ $(ipydir)/certifi \ $(ipydir)/chardet \ $(ipydir)/urllib3 \ - $(ipydir)/numpy \ - $(ipydir)/idna - $(call pybuild, tar xf, $<, requests-$(requests-version), ,\ + $(tdir)/requests-$(requests-version).tar.gz + $(call pybuild, tar xf, requests-$(requests-version), ,\ Requests $(requests-version)) -$(ipydir)/scipy: $(tdir)/scipy-$(scipy-version).tar.gz \ - $(ipydir)/numpy +$(ipydir)/scipy: $(ipydir)/numpy \ + $(tdir)/scipy-$(scipy-version).tar.gz if [ x$(on_mac_os) = xyes ]; then \ export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \ else \ export LDFLAGS="$(LDFLAGS) -shared"; \ fi; \ conf="$$(pwd)/reproduce/software/config/installation/numpy-scipy.cfg"; \ - $(call pybuild, tar xf, $<, scipy-$(scipy-version),$$conf) \ + $(call pybuild, tar xf, scipy-$(scipy-version),$$conf) \ && cp $(dtexdir)/scipy.tex $(ictdir)/ \ && echo "Scipy $(scipy-version) \citep{scipy2007,scipy2011}" > $@ -$(ipydir)/secretstorage: $(tdir)/secretstorage-$(secretstorage-version).tar.gz \ +$(ipydir)/secretstorage: $(ipydir)/jeepney \ $(ipydir)/cryptography \ - $(ipydir)/jeepney - $(call pybuild, tar xf, $<, SecretStorage-$(secretstorage-version), ,\ + $(tdir)/secretstorage-$(secretstorage-version).tar.gz + $(call pybuild, tar xf, SecretStorage-$(secretstorage-version), ,\ SecretStorage $(secretstorage-version)) -$(ipydir)/setuptools: $(tdir)/setuptools-$(setuptools-version).zip \ +$(ipydir)/setuptools: $(ibidir)/unzip \ $(ibidir)/python \ - $(ibidir)/unzip - $(call pybuild, unzip, $<, setuptools-$(setuptools-version), ,\ + $(tdir)/setuptools-$(setuptools-version).zip + $(call pybuild, unzip, setuptools-$(setuptools-version), ,\ Setuptools $(setuptools-version)) -$(ipydir)/setuptools_scm: $(tdir)/setuptools_scm-$(setuptools_scm-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, setuptools_scm-$(setuptools_scm-version), ,\ +$(ipydir)/setuptools_scm: $(ipydir)/setuptools \ + $(tdir)/setuptools_scm-$(setuptools_scm-version).tar.gz + $(call pybuild, tar xf, setuptools_scm-$(setuptools_scm-version), ,\ Setuptools-scm $(setuptools_scm-version)) -$(ipydir)/sip_tpv: $(tdir)/sip_tpv-$(sip_tpv-version).tar.gz \ - $(ipydir)/astropy \ - $(ipydir)/numpy \ - $(ipydir)/sympy - $(call pybuild, tar xf, $<, sip_tpv-$(sip_tpv-version), ,) \ +$(ipydir)/sip_tpv: $(ipydir)/sympy \ + $(ipydir)/astropy \ + $(tdir)/sip_tpv-$(sip_tpv-version).tar.gz + $(call pybuild, tar xf, sip_tpv-$(sip_tpv-version), ,) \ && cp $(dtexdir)/sip_tpv.tex $(ictdir)/ \ && echo "sip\_tpv $(sip_tpv-version) \citep{sip-tpv}" > $@ -$(ipydir)/six: $(tdir)/six-$(six-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, six-$(six-version), ,\ +$(ipydir)/six: $(ipydir)/setuptools \ + $(tdir)/six-$(six-version).tar.gz + $(call pybuild, tar xf, six-$(six-version), ,\ Six $(six-version)) -$(ipydir)/soupsieve: $(tdir)/soupsieve-$(soupsieve-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, soupsieve-$(soupsieve-version), ,\ +$(ipydir)/soupsieve: $(ipydir)/setuptools \ + $(tdir)/soupsieve-$(soupsieve-version).tar.gz + $(call pybuild, tar xf, soupsieve-$(soupsieve-version), ,\ SoupSieve $(soupsieve-version)) -$(ipydir)/sympy: $(tdir)/sympy-$(sympy-version).tar.gz \ - $(ipydir)/setuptools \ - $(ipydir)/mpmath - $(call pybuild, tar xf, $<, sympy-$(sympy-version), ,) \ +$(ipydir)/sympy: $(ipydir)/mpmath \ + $(tdir)/sympy-$(sympy-version).tar.gz + $(call pybuild, tar xf, sympy-$(sympy-version), ,) \ && cp $(dtexdir)/sympy.tex $(ictdir)/ \ && echo "SymPy $(sympy-version) \citep{sympy}" > $@ -$(ipydir)/urllib3: $(tdir)/urllib3-$(urllib3-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, urllib3-$(urllib3-version), ,\ +$(ipydir)/uncertainties: $(ipydir)/numpy \ + $(tdir)/uncertainties-$(uncertainties-version).tar.gz + $(call pybuild, tar xf, uncertainties-$(uncertainties-version), ,\ + uncertainties $(uncertainties-version)) + +$(ipydir)/urllib3: $(ipydir)/setuptools \ + $(tdir)/urllib3-$(urllib3-version).tar.gz + $(call pybuild, tar xf, urllib3-$(urllib3-version), ,\ Urllib3 $(urllib3-version)) -$(ipydir)/webencodings: $(tdir)/webencodings-$(webencodings-version).tar.gz \ - $(ipydir)/setuptools - $(call pybuild, tar xf, $<, webencodings-$(webencodings-version), ,\ +$(ipydir)/webencodings: $(ipydir)/setuptools \ + $(tdir)/webencodings-$(webencodings-version).tar.gz + $(call pybuild, tar xf, webencodings-$(webencodings-version), ,\ Webencodings $(webencodings-version)) |