diff options
Diffstat (limited to 'reproduce/software/make/python.mk')
| -rw-r--r-- | reproduce/software/make/python.mk | 30 |
1 files changed, 19 insertions, 11 deletions
diff --git a/reproduce/software/make/python.mk b/reproduce/software/make/python.mk index 6766744..936fab1 100644 --- a/reproduce/software/make/python.mk +++ b/reproduce/software/make/python.mk @@ -12,8 +12,8 @@ # # ------------------------------------------------------------------------ # -# Copyright (C) 2019-2022 Raul Infante-Sainz <infantesainz@gmail.com> -# Copyright (C) 2019-2022 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2019-2023 Raul Infante-Sainz <infantesainz@gmail.com> +# Copyright (C) 2019-2023 Mohammad Akhlaghi <mohammad@akhlaghi.org> # # This Makefile is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -172,8 +172,10 @@ $(ipydir)/astroquery-$(astroquery-version): \ $(call pybuild, tar -xf, astroquery-$(astroquery-version), , \ Astroquery $(astroquery-version)) +# The optional dependency 'h5py' that is necessary for writting tables in +# HDF5 format has been removed from Astropy because on macOS it cannot be +# installed. $(ipydir)/astropy-$(astropy-version): \ - $(ipydir)/h5py-$(h5py-version) \ $(ibidir)/expat-$(expat-version) \ $(ipydir)/scipy-$(scipy-version) \ $(ipydir)/numpy-$(numpy-version) \ @@ -283,7 +285,8 @@ $(ipydir)/entrypoints-$(entrypoints-version): \ EntryPoints $(entrypoints-version)) $(ipydir)/extension-helpers-$(extension-helpers-version): \ - $(ipydir)/setuptools-$(setuptools-version) + $(ipydir)/setuptools-$(setuptools-version) \ + $(ipydir)/setuptools_scm-$(setuptools_scm-version) tarball=extension-helpers-$(extension-helpers-version).tar.lz $(call import-source, $(extension-helpers-url), $(extension-helpers-checksum)) $(call pybuild, tar -xf, extension-helpers-$(extension-helpers-version), , \ @@ -400,7 +403,9 @@ $(ipydir)/lmfit-$(lmfit-version): \ LMFIT $(lmfit-version)) $(ipydir)/lsstdesccoord-$(lsstdesccoord-version): \ - $(ipydir)/cython-$(cython-version) + $(ipydir)/cffi-$(cffi-version) \ + $(ipydir)/numpy-$(numpy-version) \ + $(ipydir)/future-$(future-version) tarball=lsstdesccoord-$(lsstdesccoord-version).tar.gz $(call import-source, $(lsstdesccoord-url), $(lsstdesccoord-checksum)) $(call pybuild, tar -xf, LSSTDESC.Coord-$(lsstdesccoord-version), , \ @@ -455,7 +460,6 @@ $(ipydir)/mpmath-$(mpmath-version): $(ipydir)/setuptools-$(setuptools-version) mpmath $(mpmath-version)) $(ipydir)/numpy-$(numpy-version): \ - $(ibidir)/unzip-$(unzip-version) \ $(ipydir)/cython-$(cython-version) \ $(ibidir)/openblas-$(openblas-version) \ $(ipydir)/setuptools-$(setuptools-version) @@ -471,7 +475,7 @@ $(ipydir)/numpy-$(numpy-version): \ $(call pybuild, tar -xf, numpy-$(numpy-version),$$conf, \ Numpy $(numpy-version)) cp $(dtexdir)/numpy.tex $(ictdir)/ - echo "Numpy $(numpy-version) \citep{numpy2011}" > $@ + echo "Numpy $(numpy-version) \citep{numpy2020}" > $@ $(ipydir)/packaging-$(packaging-version): \ $(ipydir)/pyparsing-$(pyparsing-version) @@ -532,7 +536,8 @@ $(ipydir)/pycparser-$(pycparser-version): $(ipydir)/setuptools-$(setuptools-vers $(ipydir)/pyerfa-$(pyerfa-version): \ $(ipydir)/numpy-$(numpy-version) \ - $(ipydir)/packaging-$(packaging-version) + $(ipydir)/packaging-$(packaging-version) \ + $(ipydir)/setuptools_scm-$(setuptools_scm-version) tarball=pyerfa-$(pyerfa-version).tar.lz $(call import-source, $(pyerfa-url), $(pyerfa-checksum)) $(call pybuild, tar -xf, pyerfa-$(pyerfa-version), , \ @@ -594,9 +599,12 @@ $(ipydir)/requests-$(requests-version): $(ipydir)/idna-$(idna-version) \ $(call pybuild, tar -xf, requests-$(requests-version), , \ Requests $(requests-version)) +# 'pythran' is disabled in the build of Scipy because of complications it +# caused on some systems. It is explicitly disabled using the environmental +# variable. If for some reason it is needed, set the environment variable +# to 1, and add it as a prerequisite of 'scipy'. $(ipydir)/scipy-$(scipy-version): \ $(ipydir)/numpy-$(numpy-version) \ - $(ipydir)/pythran-$(pythran-version) \ $(ipydir)/pybind11-$(pybind11-version) tarball=scipy-$(scipy-version).tar.lz $(call import-source, $(scipy-url), $(scipy-checksum)) @@ -605,10 +613,11 @@ $(ipydir)/scipy-$(scipy-version): \ else export LDFLAGS="$(LDFLAGS) -shared" fi + export SCIPY_USE_PYTHRAN=0 conf="$$(pwd)/reproduce/software/config/numpy-scipy.cfg" $(call pybuild, tar -xf, scipy-$(scipy-version),$$conf) cp $(dtexdir)/scipy.tex $(ictdir)/ - echo "Scipy $(scipy-version) \citep{scipy2007,scipy2011}" > $@ + echo "Scipy $(scipy-version) \citep{scipy2020}" > $@ $(ipydir)/secretstorage-$(secretstorage-version): \ $(ipydir)/jeepney-$(jeepney-version) \ @@ -619,7 +628,6 @@ $(ipydir)/secretstorage-$(secretstorage-version): \ SecretStorage $(secretstorage-version)) $(ipydir)/setuptools-$(setuptools-version): \ - $(ibidir)/unzip-$(unzip-version) \ $(ibidir)/python-$(python-version) tarball=setuptools-$(setuptools-version).tar.lz $(call import-source, $(setuptools-url), $(setuptools-checksum)) |