diff options
Diffstat (limited to 'reproduce/config')
| -rw-r--r-- | reproduce/config/gnuastro/astbuildprog.conf | 16 | ||||
| -rw-r--r-- | reproduce/config/gnuastro/astconvertt.conf | 33 | ||||
| -rw-r--r-- | reproduce/config/gnuastro/aststatistics.conf | 36 | ||||
| -rw-r--r-- | reproduce/config/gnuastro/gnuastro.conf | 37 | ||||
| -rw-r--r-- | reproduce/config/pipeline/INPUTS.mk | 15 | ||||
| -rw-r--r-- | reproduce/config/pipeline/LOCAL.mk.in | 16 | ||||
| -rw-r--r-- | reproduce/config/pipeline/delete-me-num.mk | 2 | ||||
| -rw-r--r-- | reproduce/config/pipeline/dependency-numpy-scipy.cfg | 46 | ||||
| -rw-r--r-- | reproduce/config/pipeline/dependency-texlive.mk | 22 | ||||
| -rw-r--r-- | reproduce/config/pipeline/dependency-versions.mk | 123 | ||||
| -rw-r--r-- | reproduce/config/pipeline/pdf-build.mk | 21 | ||||
| -rw-r--r-- | reproduce/config/pipeline/texlive.conf | 35 |
12 files changed, 0 insertions, 402 deletions
diff --git a/reproduce/config/gnuastro/astbuildprog.conf b/reproduce/config/gnuastro/astbuildprog.conf deleted file mode 100644 index c15baf1..0000000 --- a/reproduce/config/gnuastro/astbuildprog.conf +++ /dev/null @@ -1,16 +0,0 @@ -# BuildProgram's configuration file depends on the build and is installed -# along with the rest of Gnuastro. So we'll set any specific configuration -# we want here, then import those. -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. - -# To keep the program's compiled excutable file, comment this line. -deletecompiled 1 - -# Import the built configuration file -config .local/etc/astbuildprog.conf
\ No newline at end of file diff --git a/reproduce/config/gnuastro/astconvertt.conf b/reproduce/config/gnuastro/astconvertt.conf deleted file mode 100644 index 6466455..0000000 --- a/reproduce/config/gnuastro/astconvertt.conf +++ /dev/null @@ -1,33 +0,0 @@ -# Default parameters (System) for ConvertType. -# ConvertType is part of GNU Astronomy Utitlies. -# -# Use the long option name of each parameter followed by a value. The name -# and value should be separated by atleast one white-space character (for -# example ` '[space], or tab). Lines starting with `#' are ignored. -# -# For more information, please run these commands: -# -# $ astconvertt --help # Full list of options, short doc. -# $ astconvertt -P # Print all options and used values. -# $ info astconvertt # All options and input/output. -# $ info gnuastro "Configuration files" # How to use configuration files. -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. - -# Input: - -# Output: - quality 100 - widthincm 10.0 - borderwidth 1 - output jpg - -# Flux: - invert 0 - -# Common options diff --git a/reproduce/config/gnuastro/aststatistics.conf b/reproduce/config/gnuastro/aststatistics.conf deleted file mode 100644 index 1d13e3f..0000000 --- a/reproduce/config/gnuastro/aststatistics.conf +++ /dev/null @@ -1,36 +0,0 @@ -# Default parameters (System) for Statistics. -# Statistics is part of GNU Astronomy Utitlies. -# -# Use the long option name of each parameter followed by a value. The name -# and value should be separated by atleast one white-space character (for -# example ` '[space], or tab). Lines starting with `#' are ignored. -# -# For more information, please run these commands: -# -# $ aststatistics --help # Full list of options, short doc. -# $ aststatistics -P # Print all options and used values. -# $ info aststatistics # All options and input/output. -# $ info gnuastro "Configuration files" # How to use configuration files. -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. - -# Input image: - -# Sky and its STD settings - khdu 1 - meanmedqdiff 0.005 - outliersigma 10 - outliersclip 3,0.2 - smoothwidth 3 - sclipparams 3,0.1 - -# Histogram and CFP settings - numasciibins 70 - asciiheight 10 - numbins 100 - mirrordist 1.5 diff --git a/reproduce/config/gnuastro/gnuastro.conf b/reproduce/config/gnuastro/gnuastro.conf deleted file mode 100644 index 57fcadc..0000000 --- a/reproduce/config/gnuastro/gnuastro.conf +++ /dev/null @@ -1,37 +0,0 @@ -# Default values for the common options to all the programs in GNU -# Astronomy Utitlies. -# -# IMPORTANT NOTE: The `lastconfig' option is very important in a -# reproducible environment. Because we don't want any of Gnuastro's -# programs to go into an un-controlled environment (user or system wide -# configuration files). -# -# The rest of this configuration file is taken from the default Gnuastro -# configuration from its source (`bin/gnuastro.conf'). -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. - -# Local project settings (`config' has to be before `lastconfig'). - config .gnuastro/gnuastro-local.conf - lastconfig 1 - -# Input: - hdu 1 - ignorecase 1 - searchin name - -# Tessellation - tilesize 50,50 - numchannels 1,1 - remainderfrac 0.1 - workoverch 0 - interpnumngb 9 - interponlyblank 0 - -# Output: - tableformat fits-binary
\ No newline at end of file diff --git a/reproduce/config/pipeline/INPUTS.mk b/reproduce/config/pipeline/INPUTS.mk deleted file mode 100644 index eb38295..0000000 --- a/reproduce/config/pipeline/INPUTS.mk +++ /dev/null @@ -1,15 +0,0 @@ -# Input files necessary for this project. -# -# This file is read by the configure script and running Makefiles. -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. - -WFPC2IMAGE = WFPC2ASSNu5780205bx.fits -WFPC2MD5 = a4791e42cd1045892f9c41f11b50bad8 -WFPC2SIZE = 62kb -WFPC2URL = https://fits.gsfc.nasa.gov/samples diff --git a/reproduce/config/pipeline/LOCAL.mk.in b/reproduce/config/pipeline/LOCAL.mk.in deleted file mode 100644 index 785bb6a..0000000 --- a/reproduce/config/pipeline/LOCAL.mk.in +++ /dev/null @@ -1,16 +0,0 @@ -# Local project configuration. -# -# This is just a template for the `./configure' script to fill in. Please -# don't make any change to this file. -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. -BDIR = @bdir@ -INDIR = @indir@ -DEPENDENCIES-DIR = @ddir@ -DOWNLOADER = @downloader@ -GROUP-NAME = @groupname@ diff --git a/reproduce/config/pipeline/delete-me-num.mk b/reproduce/config/pipeline/delete-me-num.mk deleted file mode 100644 index 17f608c..0000000 --- a/reproduce/config/pipeline/delete-me-num.mk +++ /dev/null @@ -1,2 +0,0 @@ -# Number of samples to create -delete-me-num = 50 diff --git a/reproduce/config/pipeline/dependency-numpy-scipy.cfg b/reproduce/config/pipeline/dependency-numpy-scipy.cfg deleted file mode 100644 index 4b7a7b0..0000000 --- a/reproduce/config/pipeline/dependency-numpy-scipy.cfg +++ /dev/null @@ -1,46 +0,0 @@ -# THIS IS A COPY OF NUMPY'S site.cfg.example, CUSTOMIZED FOR THIS TEMPLATE -# ------------------------------------------------------------------------ - -# This file provides configuration information about non-Python -# dependencies for numpy.distutils-using packages. Create a file like this -# called "site.cfg" next to your package's setup.py file and fill in the -# appropriate sections. Not all packages will use all sections so you -# should leave out sections that your package does not use. -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. - -# IMPORTANT NOTE -# -------------- -# -# The `ALL' grouping does't apply to ATLAS!!!!! - - [ALL] - library_dirs = @LIBDIR@ - include_dirs = @INCDIR@ - - -# FFT libraries -# ------------- -# There are two FFT libraries that we can configure here: FFTW (2 and 3) and djbfft. -# Note that these libraries are not used by numpy or scipy. -# -# http://fftw.org/ -# https://cr.yp.to/djbfft.html -# -# Given only this section, numpy.distutils will try to figure out which version -# of FFTW you are using. - -# Even with this section, Numpy apparently does not use fftw. But we will -# keep it here for the future (if a solution is found). -[fftw] -libraries = fftw3 -# -# For djbfft, numpy.distutils will look for either djbfft.a or libdjbfft.a . -#[djbfft] -#include_dirs = /usr/local/djbfft/include -#library_dirs = /usr/local/djbfft/lib diff --git a/reproduce/config/pipeline/dependency-texlive.mk b/reproduce/config/pipeline/dependency-texlive.mk deleted file mode 100644 index 0acf5ab..0000000 --- a/reproduce/config/pipeline/dependency-texlive.mk +++ /dev/null @@ -1,22 +0,0 @@ -# Necessary packages to install in TeX Live. -# -# If any extra TeX package is necessary to build your paper, just add its -# name to this variable (you can check in `ctan.org' to find the official -# name). -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. - - -# Note on `tex' and `fancyhdr': These two packages are installed along with -# the basic installation scheme that we used to install tlmgr, they will be -# ignored in the `tlmgr install' command, but will be used later when we -# want their versions. -texlive-packages = tex fancyhdr ec newtx fontaxes xkeyval etoolbox xcolor \ - setspace caption footmisc datetime fmtcount titlesec \ - preprint ulem biblatex biber logreq pgf pgfplots fp \ - courier tex-gyre txfonts times diff --git a/reproduce/config/pipeline/dependency-versions.mk b/reproduce/config/pipeline/dependency-versions.mk deleted file mode 100644 index c6c8043..0000000 --- a/reproduce/config/pipeline/dependency-versions.mk +++ /dev/null @@ -1,123 +0,0 @@ -# Versions of the various dependencies -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# Copyright (C) 2019 Raul Infante-Sainz <infantesainz@gmail.com> -# -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. -# -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. - -# C/C++ programs and libraries. -atlas-version = 3.10.3 -bash-version = 5.0 -binutils-version = 2.31.1 -cfitsio-version = 3.45 -cmake-version = 3.12.4 -coreutils-version = 8.30 -curl-version = 7.63.0 -diffutils-version = 3.7 -fftw-version = 3.3.8 -file-version = 5.36 -findutils-version = 4.6.0.199-e3fc -flock-version = 0.2.3 -freetype-version = 2.9 -gawk-version = 4.2.1 -gcc-version = 8.3.0 -ghostscript-version = 9.26 -git-version = 2.20.1 -gmp-version = 6.1.2 -gnuastro-version = 0.8 -grep-version = 3.3 -gsl-version = 2.5 -gzip-version = 1.10 -hdf5-version = 1.10.5 -isl-version = 0.18 -libbsd-version = 0.9.1 -libffi-version = 3.2.1 -libjpeg-version = v9b -libpng-version = 1.6.36 -libtiff-version = 4.0.10 -libtool-version = 2.4.6 -lzip-version = 1.20 -m4-version = 1.4.18 -make-version = 4.2.90 -metastore-version = 1.1.2-23-fa9170b -mpfr-version = 4.0.2 -mpc-version = 1.1.0 -ncurses-version = 6.1 -openblas-version = 0.3.5 -openmpi-version = 4.0.1 -openssl-version = 1.1.1a -patchelf-version = 0.9 -pkgconfig-version = 0.29.2 -python-version = 3.6.8 -readline-version = 8.0 -sed-version = 4.7 -tar-version = 1.31 -unzip-version = 6.0 -wget-version = 1.20.1 -which-version = 2.21 -xz-version = 5.2.4 -zip-version = 3.0 -zlib-version = 1.2.11 - -# Special libraries -# ----------------- -# -# When updating the version of these libraries, please look into the build -# rule first: In one way or another, the version string becomes necessary -# during their build and must be accounted for. -bzip2-version = 1.0.6 -lapack-version = 3.8.0 -libgit2-version = 0.26.0 -wcslib-version = 6.2 - -# Python packages -# --------------- -# -# IMPORTANT: Fix url in `reproduce/src/make/dependencies.mk' -# if changing the version -asn1crypto-version = 0.24.0 -astroquery-version = 0.3.9 -astropy-version = 3.1.1 -beautifulsoup4-version = 4.7.1 -certifi-version = 2018.11.29 -cffi-version = 1.12.2 -chardet-version = 3.0.4 -cryptography-version = 2.6.1 -cycler-version = 0.10.0 -cython-version = 0.29.6 -entrypoints-version = 0.3 -h5py-version = 2.9.0 -html5lib-version = 1.0.1 -idna-version = 2.8 -jeepney-version = 0.4 -kiwisolver-version = 1.0.1 -keyring-version = 18.0.0 -matplotlib-version = 3.0.2 -mpi4py-version = 3.0.1 -numpy-version = 1.16.2 -pip-version = 19.0.2 -pycparser-version = 2.19 -pyparsing-version = 2.3.1 -pypkgconfig-version = 1.5.1 -python-dateutil-version = 2.8.0 -requests-version = 2.21.0 -scipy-version = 1.2.1 -secretstorage-version = 3.1.1 -setuptools-version = 40.8.0 -setuptools_scm-version = 3.2.0 -six-version = 1.12.0 -soupsieve-version = 1.8 -urllib3-version = 1.24.1 -virtualenv-version = 16.4.0 -webencodings-version = 0.5.1 diff --git a/reproduce/config/pipeline/pdf-build.mk b/reproduce/config/pipeline/pdf-build.mk deleted file mode 100644 index 3a86ff3..0000000 --- a/reproduce/config/pipeline/pdf-build.mk +++ /dev/null @@ -1,21 +0,0 @@ -# Make the final PDF? -# ------------------- -# -# During the project's early phases, it is usually not necessary to build -# the PDF file (which makes a lot of output lines on the command-line and -# can make it hard to find the commands and possible errors (and their -# outputs). Also, in some cases, only the produced results may be of -# interest and not the final PDF, so LaTeX (and its necessary packages) may -# not be installed. -# -# If this variable is given any string, a PDF will be made with -# LaTeX. Otherwise, a notice will just printed that for now, no PDF will be -# created. -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. -pdf-build-final = yes diff --git a/reproduce/config/pipeline/texlive.conf b/reproduce/config/pipeline/texlive.conf deleted file mode 100644 index 53054e1..0000000 --- a/reproduce/config/pipeline/texlive.conf +++ /dev/null @@ -1,35 +0,0 @@ -# Basic profile for build. Values to set: -# -# installdir: Install directory -# -# Copyright (C) 2018-2019 Mohammad Akhlaghi <mohammad@akhlaghi.org> -# -# Copying and distribution of this file, with or without modification, are -# permitted in any medium without royalty provided the copyright notice and -# this notice are preserved. This file is offered as-is, without any -# warranty. -selected_scheme scheme-basic -TEXDIR @installdir@/texlive/2018 -TEXMFCONFIG @installdir@/texlive2018/texmf-config -TEXMFLOCAL @installdir@/texlive/texmf-local -TEXMFSYSCONFIG @installdir@/texlive/2018/texmf-config -TEXMFSYSVAR @installdir@/texlive/2018/texmf-var -TEXMFVAR @installdir@/texlive2018/texmf-var -instopt_adjustpath 0 -instopt_adjustrepo 1 -instopt_letter 0 -instopt_portable 0 -instopt_write18_restricted 1 -tlpdbopt_autobackup 1 -tlpdbopt_backupdir @installdir@/texlive/2018/backups -tlpdbopt_create_formats 1 -tlpdbopt_desktop_integration 1 -tlpdbopt_file_assocs 1 -tlpdbopt_generate_updmap 0 -tlpdbopt_install_docfiles 1 -tlpdbopt_install_srcfiles 1 -tlpdbopt_post_code 1 -tlpdbopt_sys_bin @installdir@/bin -tlpdbopt_sys_info @installdir@/share/info -tlpdbopt_sys_man @installdir@/share/man -tlpdbopt_w32_multi_user 1 |