From 2964e3d8480d6ec418f5314ad73671a60d42a596 Mon Sep 17 00:00:00 2001
From: Mohammad Akhlaghi <mohammad@akhlaghi.org>
Date: Sat, 28 Mar 2020 04:28:14 +0000
Subject: Cleaned up the introduction, definitions for provenance and lineage

Until now, the introduction had repeated several things and also had a
relatively long list of things to add in its end. Also, it was highly
focused to scientific papers.

With this commit, I effectively re-wrote it, with the starting paragraphs
becoming more industry-friendly, while also focusing on the scientific
cases. Many of the repetative parts were removed and the listed items in
the end were put into the text in a much better context.

Also, now that the name of the system involves "lineage" (and a lot of
focus is put on it in the start) the terms data provenance and lineage were
defined in the definition section.

Some other intersting points that I encountered during the research on
definitions were added to the discussion and final lists, and the DOI of
one reference paper was corrected.
---
 tex/src/references.tex | 36 +++++++++++++++++++++++++++++++++++-
 1 file changed, 35 insertions(+), 1 deletion(-)

(limited to 'tex/src')

diff --git a/tex/src/references.tex b/tex/src/references.tex
index f4dee1d..6e1de41 100644
--- a/tex/src/references.tex
+++ b/tex/src/references.tex
@@ -1,3 +1,23 @@
+@ARTICLE{dicosmo20,
+       author = {{Di Cosmo}, Roberto and {Gruenpeter}, Morane and {Zacchiroli}, Stefano},
+        title = "{Referencing Source Code Artifacts: a Separate Concern in Software Citation}",
+      journal = {Computing in Science \& Engineering},
+         year = 2020,
+       volume = 22,
+          eid = {arXiv:2001.08647},
+        pages = {33},
+archivePrefix = {arXiv},
+       eprint = {2001.08647},
+ primaryClass = {cs.DL},
+          doi = {10.1109/MCSE.2019.2963148},
+       adsurl = {https://ui.adsabs.harvard.edu/abs/2020arXiv200108647D},
+      adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+
+
+
 @ARTICLE{menke20,
      author = {Joe Menke and Martijn Roelandse and Burak Ozyurt and Maryann Martone and Anita Bandrowski},
       title = {Rigor and Transparency Index, a new metric of quality for assessing biological and medical science methods},
@@ -1324,6 +1344,20 @@ Reproducible Research in Image Processing},
 
 
 
+@ARTICLE{cheney09,
+     author = {James Cheney and Laura Chiticariu and Wang-Chiew Tan},
+      title = {Provenance in Databases: Why, How, and Where},
+    journal = {Foundations and Trends in Databases},
+       year = {2009},
+     volume = {1},
+      pages = {379},
+        doi = {10.1561/1900000006},
+}
+
+
+
+
+
 @ARTICLE{ioannidis2009,
      author = {John P. A. Ioannidis and David B. Allison and Catherine A. Ball and Issa Coulibaly and Xiangqin Cui and Aedín C Culhane and Mario Falchi and Cesare Furlanello and Laurence Game and Giuseppe Jurman and Jon Mangion and Tapan Mehta and Michael Nitzberg and Grier P. Page and Enrico Petretto and Vera {van Noort}},
       title = {Repeatability of published microarray gene expression analyses},
@@ -1387,7 +1421,7 @@ Reproducible Research in Image Processing},
        year = {2008},
      volume = {20},
       pages = {473},
-        doi = {10.1002/cpe.1237},
+        doi = {10.1002/cpe.1233},
 }
 
 
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