From 5a8974d1cabd236a1b47909f452be480d0c970bf Mon Sep 17 00:00:00 2001
From: Raul Infante-Sainz <infantesainz@gmail.com>
Date: Fri, 12 Apr 2019 07:30:37 +0100
Subject: Acknowledged Scipy-related packages: Cython, Matplotlib, Numpy and
 Scipy

Until now, name and version of all Python packages were indicated in the
final paper, but not the main paper of them (if it exists).

With this commit, some Python packages (Cython, Matplotlib, Numpy and
Scipy) are now properly acknoledged by citating the source paper.
`mpi4py' is also cited although this package is not yet included into
the pipeline.
---
 tex/src/references.tex | 85 ++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 85 insertions(+)

(limited to 'tex/src/references.tex')

diff --git a/tex/src/references.tex b/tex/src/references.tex
index c1c4084..47015bb 100644
--- a/tex/src/references.tex
+++ b/tex/src/references.tex
@@ -158,3 +158,88 @@ archivePrefix = "arXiv",
    adsurl = {http://adsabs.harvard.edu/abs/2013A\%26A...558A..33A},
   adsnote = {Provided by the SAO/NASA Astrophysics Data System}
 }
+
+
+
+
+
+@ARTICLE{cython2011,
+   author = {{Behnel}, S. and {Bradshaw}, R. and {Citro}, C. and {Dalcin}, L. and
+	{Seljebotn}, D.~S. and {Smith}, K.},
+    title = "{Cython: The Best of Both Worlds}",
+  journal = {Computing in Science and Engineering},
+     year = 2011,
+    month = mar,
+   volume = 13,
+   number = 2,
+    pages = {31-39},
+      doi = {10.1109/MCSE.2010.118},
+   adsurl = {http://adsabs.harvard.edu/abs/2011CSE....13b..31B},
+  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+
+
+
+@ARTICLE{mpi4py2011,
+   author = {{Dalcin}, L.~D. and {Paz}, R.~R. and {Kler}, P.~A. and {Cosimo}, A.
+	},
+    title = "{Parallel distributed computing using Python}",
+  journal = {Advances in Water Resources},
+     year = 2011,
+    month = sep,
+   volume = 34,
+    pages = {1124-1139},
+      doi = {10.1016/j.advwatres.2011.04.013},
+   adsurl = {http://adsabs.harvard.edu/abs/2011AdWR...34.1124D},
+  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+
+@ARTICLE{numpy2011,
+   author = {{van der Walt}, S. and {Colbert}, S.~C. and {Varoquaux}, G.},
+    title = "{The NumPy Array: A Structure for Efficient Numerical Computation}",
+  journal = {Computing in Science and Engineering},
+archivePrefix = "arXiv",
+   eprint = {1102.1523},
+ primaryClass = "cs.MS",
+     year = 2011,
+    month = mar,
+   volume = 13,
+   number = 2,
+    pages = {22-30},
+      doi = {10.1109/MCSE.2011.37},
+   adsurl = {http://adsabs.harvard.edu/abs/2011CSE....13b..22V},
+  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+
+
+
+@Article{matplotlib2007,
+  Author    = {Hunter, J. D.},
+  Title     = {Matplotlib: A 2D graphics environment},
+  Journal   = {Computing In Science \& Engineering},
+  Volume    = {9},
+  Number    = {3},
+  Pages     = {90--95},
+  abstract  = {Matplotlib is a 2D graphics package used for Python
+  for application development, interactive scripting, and
+  publication-quality image generation across user
+  interfaces and operating systems.},
+  publisher = {IEEE COMPUTER SOC},
+  doi       = {10.1109/MCSE.2007.55},
+  year      = 2007
+}
+
+
+
+
+@Misc{scipy2001,
+  author =    {Eric Jones and Travis Oliphant and Pearu Peterson and others},
+  title =     {{SciPy}: Open source scientific tools for {Python}},
+  year =      {2001--},
+  url = "http://www.scipy.org/"
+}
-- 
cgit v1.2.1


From f4b0b28c3ccfe9dc49b529773eee75627253689d Mon Sep 17 00:00:00 2001
From: Raul Infante-Sainz <infantesainz@gmail.com>
Date: Fri, 12 Apr 2019 13:29:07 +0100
Subject: Fixed some Scipy-related packages citations

Until now, the Scipy citation was only one paper and not the correct one
(it was the online manual).

With this commit, Scipy is properly cited using the two papers. Also
some modifications in the `tex/src/references.tex' have been done
(remove last page number).
---
 tex/src/references.tex | 54 +++++++++++++++++++++++++++++++++++++++-----------
 1 file changed, 42 insertions(+), 12 deletions(-)

(limited to 'tex/src/references.tex')

diff --git a/tex/src/references.tex b/tex/src/references.tex
index 47015bb..b4f4cb4 100644
--- a/tex/src/references.tex
+++ b/tex/src/references.tex
@@ -129,6 +129,7 @@ archivePrefix = "arXiv",
 
 
 
+
 @ARTICLE{astropy2013,
    author = {{Astropy Collaboration} and {Robitaille}, T.~P. and {Tollerud}, E.~J. and
 	{Greenfield}, P. and {Droettboom}, M. and {Bray}, E. and {Aldcroft}, T. and
@@ -167,12 +168,12 @@ archivePrefix = "arXiv",
    author = {{Behnel}, S. and {Bradshaw}, R. and {Citro}, C. and {Dalcin}, L. and
 	{Seljebotn}, D.~S. and {Smith}, K.},
     title = "{Cython: The Best of Both Worlds}",
-  journal = {Computing in Science and Engineering},
+  journal = {CiSE},
      year = 2011,
     month = mar,
    volume = 13,
    number = 2,
-    pages = {31-39},
+    pages = {31},
       doi = {10.1109/MCSE.2010.118},
    adsurl = {http://adsabs.harvard.edu/abs/2011CSE....13b..31B},
   adsnote = {Provided by the SAO/NASA Astrophysics Data System}
@@ -190,7 +191,7 @@ archivePrefix = "arXiv",
      year = 2011,
     month = sep,
    volume = 34,
-    pages = {1124-1139},
+    pages = {1124},
       doi = {10.1016/j.advwatres.2011.04.013},
    adsurl = {http://adsabs.harvard.edu/abs/2011AdWR...34.1124D},
   adsnote = {Provided by the SAO/NASA Astrophysics Data System}
@@ -198,10 +199,30 @@ archivePrefix = "arXiv",
 
 
 
+
+
+@ARTICLE{scipy2011,
+author={K. J. {Millman} and M. {Aivazis}},
+journal={CiSE},
+title={Python for Scientists and Engineers},
+year={2011},
+volume={13},
+number={2},
+pages={9},
+keywords={Special issues and sections;Computer languages;Programming;Scientific computing;Numerical models;Programming languages;Python;Scientific computing;interactive research;Python libraries;Python tools},
+doi={10.1109/MCSE.2011.36},
+ISSN={1521-9615},
+month={March},
+}
+
+
+
+
+
 @ARTICLE{numpy2011,
    author = {{van der Walt}, S. and {Colbert}, S.~C. and {Varoquaux}, G.},
     title = "{The NumPy Array: A Structure for Efficient Numerical Computation}",
-  journal = {Computing in Science and Engineering},
+  journal = {CiSE},
 archivePrefix = "arXiv",
    eprint = {1102.1523},
  primaryClass = "cs.MS",
@@ -209,7 +230,7 @@ archivePrefix = "arXiv",
     month = mar,
    volume = 13,
    number = 2,
-    pages = {22-30},
+    pages = {22},
       doi = {10.1109/MCSE.2011.37},
    adsurl = {http://adsabs.harvard.edu/abs/2011CSE....13b..22V},
   adsnote = {Provided by the SAO/NASA Astrophysics Data System}
@@ -218,13 +239,14 @@ archivePrefix = "arXiv",
 
 
 
+
 @Article{matplotlib2007,
   Author    = {Hunter, J. D.},
   Title     = {Matplotlib: A 2D graphics environment},
-  Journal   = {Computing In Science \& Engineering},
+  Journal   = {CiSE},
   Volume    = {9},
   Number    = {3},
-  Pages     = {90--95},
+  Pages     = {90},
   abstract  = {Matplotlib is a 2D graphics package used for Python
   for application development, interactive scripting, and
   publication-quality image generation across user
@@ -237,9 +259,17 @@ archivePrefix = "arXiv",
 
 
 
-@Misc{scipy2001,
-  author =    {Eric Jones and Travis Oliphant and Pearu Peterson and others},
-  title =     {{SciPy}: Open source scientific tools for {Python}},
-  year =      {2001--},
-  url = "http://www.scipy.org/"
+
+@ARTICLE{scipy2007,
+author={T. E. {Oliphant}},
+journal={CiSE},
+title={Python for Scientific Computing},
+year={2007},
+volume={9},
+number={3},
+pages={10},
+keywords={high level languages;Python;scientific computing;steering language;scientific codes;high-level language;Scientific computing;High level languages;Libraries;Writing;Application software;Embedded software;Software standards;Standards development;Internet;Prototypes;Python;computer languages;scientific programming;scientific computing},
+doi={10.1109/MCSE.2007.58},
+ISSN={1521-9615},
+month={May},
 }
-- 
cgit v1.2.1

