From be8481f3218b736efa8bdaa12a3a407984c2c62b Mon Sep 17 00:00:00 2001 From: Mohammad Akhlaghi Date: Mon, 20 Apr 2020 01:07:49 +0100 Subject: Maneage instead of Template in README-hacking.md and copyright notices Until now, throughout Maneage we were using the old name of "Reproducible Paper Template". But we have finally decided to use Maneage, so to avoid confusion, the name has been corrected in `README-hacking.md' and also in the copyright notices. Note also that in `README-hacking.md', the main Maneage branch is now called `maneage', and the main Git remote has been changed to `https://gitlab.com/maneage/project' (this is a new GitLab Group that I have setup for all Maneage-related projects). In this repository there is only one `maneage' branch to avoid complications with the `master' branch of the projects using Maneage later. --- reproduce/analysis/bash/download-multi-try | 16 ++++++++-------- reproduce/analysis/make/delete-me.mk | 19 ++++++++----------- reproduce/analysis/make/download.mk | 16 ++++++++-------- reproduce/analysis/make/initialize.mk | 19 ++++++++----------- reproduce/analysis/make/paper.mk | 19 ++++++++----------- reproduce/analysis/make/prepare.mk | 16 ++++++++-------- reproduce/analysis/make/top-make.mk | 21 +++++++++------------ reproduce/analysis/make/top-prepare.mk | 19 ++++++++----------- reproduce/analysis/make/verify.mk | 19 ++++++++----------- 9 files changed, 73 insertions(+), 91 deletions(-) (limited to 'reproduce/analysis') diff --git a/reproduce/analysis/bash/download-multi-try b/reproduce/analysis/bash/download-multi-try index 7a5f8f2..4136df4 100755 --- a/reproduce/analysis/bash/download-multi-try +++ b/reproduce/analysis/bash/download-multi-try @@ -28,15 +28,15 @@ # # Copyright (C) 2019-2020 Mohammad Akhlaghi # -# This script is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This script is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This script is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. See . +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See . diff --git a/reproduce/analysis/make/delete-me.mk b/reproduce/analysis/make/delete-me.mk index 8b97673..974561d 100644 --- a/reproduce/analysis/make/delete-me.mk +++ b/reproduce/analysis/make/delete-me.mk @@ -2,18 +2,15 @@ # # Copyright (C) 2018-2020 Mohammad Akhlaghi # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# . +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See . diff --git a/reproduce/analysis/make/download.mk b/reproduce/analysis/make/download.mk index 07e9f27..48984c7 100644 --- a/reproduce/analysis/make/download.mk +++ b/reproduce/analysis/make/download.mk @@ -7,15 +7,15 @@ # # Copyright (C) 2018-2020 Mohammad Akhlaghi # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. See . +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See . diff --git a/reproduce/analysis/make/initialize.mk b/reproduce/analysis/make/initialize.mk index d8a8b73..ce63480 100644 --- a/reproduce/analysis/make/initialize.mk +++ b/reproduce/analysis/make/initialize.mk @@ -2,18 +2,15 @@ # # Copyright (C) 2018-2020 Mohammad Akhlaghi # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# . +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See . diff --git a/reproduce/analysis/make/paper.mk b/reproduce/analysis/make/paper.mk index 8a14573..e669a96 100644 --- a/reproduce/analysis/make/paper.mk +++ b/reproduce/analysis/make/paper.mk @@ -2,18 +2,15 @@ # # Copyright (C) 2018-2020 Mohammad Akhlaghi # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# . +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See . diff --git a/reproduce/analysis/make/prepare.mk b/reproduce/analysis/make/prepare.mk index 36f25e7..9f80afe 100644 --- a/reproduce/analysis/make/prepare.mk +++ b/reproduce/analysis/make/prepare.mk @@ -2,15 +2,15 @@ # # Copyright (C) 2019-2020 Mohammad Akhlaghi # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. See . +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See . diff --git a/reproduce/analysis/make/top-make.mk b/reproduce/analysis/make/top-make.mk index 43e88b2..feae6db 100644 --- a/reproduce/analysis/make/top-make.mk +++ b/reproduce/analysis/make/top-make.mk @@ -2,18 +2,15 @@ # # Copyright (C) 2018-2020 Mohammad Akhlaghi # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. -# -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# . +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. +# +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See . diff --git a/reproduce/analysis/make/top-prepare.mk b/reproduce/analysis/make/top-prepare.mk index be7482c..79b976f 100644 --- a/reproduce/analysis/make/top-prepare.mk +++ b/reproduce/analysis/make/top-prepare.mk @@ -6,18 +6,15 @@ # # Copyright (C) 2019-2020 Mohammad Akhlaghi # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# . +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See . diff --git a/reproduce/analysis/make/verify.mk b/reproduce/analysis/make/verify.mk index d11dcbf..1188797 100644 --- a/reproduce/analysis/make/verify.mk +++ b/reproduce/analysis/make/verify.mk @@ -2,18 +2,15 @@ # # Copyright (C) 2020 Mohammad Akhlaghi # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This file is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# . +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See . -- cgit v1.2.1 From cb74bd9fa865d2f3f26d680ff9e5e40b7db4682f Mon Sep 17 00:00:00 2001 From: Boud Roukema Date: Sat, 25 Apr 2020 22:40:07 +0200 Subject: verify-outputs.conf: typo correction in comment to avoid confusion Until now, the comment in the file said that setting the `verify-outputs` variable to `yes` disables the verification. Looking at `reproduce/analysis/make/verify.mk` shows that the opposite is true. With this commit, the word `disable` is replaced with `enable` so that the user is not confused by the conflict between the source code in the other file and this comment. --- reproduce/analysis/config/verify-outputs.conf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'reproduce/analysis') diff --git a/reproduce/analysis/config/verify-outputs.conf b/reproduce/analysis/config/verify-outputs.conf index 4f99661..9f5f25a 100644 --- a/reproduce/analysis/config/verify-outputs.conf +++ b/reproduce/analysis/config/verify-outputs.conf @@ -1,2 +1,2 @@ -# To disable verification of output datasets set this variable to yes +# To enable verification of output datasets set this variable to yes verify-outputs = yes -- cgit v1.2.1 From d058b0ca46efc179da2c826e40e934f8dd7edacb Mon Sep 17 00:00:00 2001 From: Zahra Sharbaf Date: Sun, 26 Apr 2020 07:37:07 +0430 Subject: Corrected Gnuastro configuration directory in initialize.mk Recently (in Commit 8eb0892e) the Gnuastro configuration files moved under "reproduce/analysis/config/gnuastro" directory (before that they were in `reproduce/software/config/gnuastro)'. But this hadn't been reflected in it the variable that defines this directory in `initialize.mk'. With this commit, the address of the Gnuastro configuration files directory is corrected, allowing Gnuastro programs to operate properly when it is used. --- reproduce/analysis/make/initialize.mk | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'reproduce/analysis') diff --git a/reproduce/analysis/make/initialize.mk b/reproduce/analysis/make/initialize.mk index ce63480..a4802cb 100644 --- a/reproduce/analysis/make/initialize.mk +++ b/reproduce/analysis/make/initialize.mk @@ -36,7 +36,7 @@ bashdir = reproduce/analysis/bash pconfdir = reproduce/analysis/config installdir = $(BDIR)/software/installed # --------- Delete for no Gnuastro --------- -gconfdir = reproduce/software/config/gnuastro +gconfdir = reproduce/analysis/config/gnuastro # ------------------------------------------ -- cgit v1.2.1