From 7b008dfbb9b2f6a1f5145e3841464e723f590feb Mon Sep 17 00:00:00 2001
From: Mohammad Akhlaghi <mohammad@akhlaghi.org>
Date: Fri, 22 May 2020 02:15:06 +0100
Subject: Re-write of the paper to fit in ~6000 words and IEEE format

Following the fact that the DSJ editor decided that this paper doesn't fit
into their scope, we decided to submit it to IEEE's Computing in Science
and Engineering (CiSE). So with this commit the text was re-written to fit
into their style and word-count limitations.
---
 reproduce/analysis/config/demo-year.conf       |  3 +++
 reproduce/analysis/config/menke-demo-year.conf |  3 ---
 reproduce/analysis/make/demo-plot.mk           |  4 ++--
 reproduce/analysis/make/format.mk              |  2 +-
 reproduce/analysis/make/paper.mk               | 11 ++++++++---
 5 files changed, 14 insertions(+), 9 deletions(-)
 create mode 100644 reproduce/analysis/config/demo-year.conf
 delete mode 100644 reproduce/analysis/config/menke-demo-year.conf

(limited to 'reproduce/analysis')

diff --git a/reproduce/analysis/config/demo-year.conf b/reproduce/analysis/config/demo-year.conf
new file mode 100644
index 0000000..429b220
--- /dev/null
+++ b/reproduce/analysis/config/demo-year.conf
@@ -0,0 +1,3 @@
+# This is the demonstration year showing the number of papers studied
+# before 1997.
+menke-demo-year = 1996
diff --git a/reproduce/analysis/config/menke-demo-year.conf b/reproduce/analysis/config/menke-demo-year.conf
deleted file mode 100644
index 429b220..0000000
--- a/reproduce/analysis/config/menke-demo-year.conf
+++ /dev/null
@@ -1,3 +0,0 @@
-# This is the demonstration year showing the number of papers studied
-# before 1997.
-menke-demo-year = 1996
diff --git a/reproduce/analysis/make/demo-plot.mk b/reproduce/analysis/make/demo-plot.mk
index ac05776..c14b83d 100644
--- a/reproduce/analysis/make/demo-plot.mk
+++ b/reproduce/analysis/make/demo-plot.mk
@@ -27,7 +27,7 @@ $(a2dir):; mkdir $@
 
 # Table for Figure 1C of Menke+20
 # -------------------------------
-a2mk20f1c = $(a2dir)/tools-per-year.txt
+a2mk20f1c = $(a2dir)/columns.txt
 $(a2mk20f1c): $(mk20tab3) | $(a2dir)
 
         # Remove the (possibly) produced figure that is created from this
@@ -47,7 +47,7 @@ $(a2mk20f1c): $(mk20tab3) | $(a2dir)
 
 
 # Final LaTeX macro
-$(mtexdir)/demo-plot.tex: $(a2mk20f1c) $(pconfdir)/menke-demo-year.conf
+$(mtexdir)/demo-plot.tex: $(a2mk20f1c) $(pconfdir)/demo-year.conf
 
         # Find the first year (first column of first row) of data.
 	v=$$(awk 'NR==1{print $$1}' $(a2mk20f1c))
diff --git a/reproduce/analysis/make/format.mk b/reproduce/analysis/make/format.mk
index d10034d..3070e6a 100644
--- a/reproduce/analysis/make/format.mk
+++ b/reproduce/analysis/make/format.mk
@@ -24,7 +24,7 @@
 # Save the "Table 3" spreadsheet from the downloaded `.xlsx' file into a
 # simple plain-text file that is easy to use.
 a1dir = $(BDIR)/analysis1
-mk20tab3 = $(a1dir)/menke20-table-3.txt
+mk20tab3 = $(a1dir)/table-3.txt
 $(a1dir):; mkdir $@
 $(mk20tab3): $(indir)/menke20.xlsx | $(a1dir)
 
diff --git a/reproduce/analysis/make/paper.mk b/reproduce/analysis/make/paper.mk
index 4f2088b..a216370 100644
--- a/reproduce/analysis/make/paper.mk
+++ b/reproduce/analysis/make/paper.mk
@@ -86,15 +86,21 @@ $(mtexdir)/project.tex: $(mtexdir)/verify.tex
 # recipe and the `paper.pdf' recipe. But if `tex/src/references.bib' hasn't
 # been modified, we don't want to re-build the bibliography, only the final
 # PDF.
-$(texbdir)/paper.bbl: tex/src/references.bib $(mtexdir)/dependencies-bib.tex \
+$(texbdir)/paper.bbl: tex/src/references.tex $(mtexdir)/dependencies-bib.tex \
                       | $(mtexdir)/project.tex
         # If `$(mtexdir)/project.tex' is empty, don't build PDF.
 	@macros=$$(cat $(mtexdir)/project.tex)
 	if [ x"$$macros" != x ]; then
 
+          # Unfortunately I can't get bibtex to look into a special
+          # directory for the references, so we'll copy it here.
+	  p=$$(pwd)
+	  if ! [ -L $(texbdir)/references.bib ]; then
+	    ln -s $$p/tex/src/references.tex $(texbdir)/references.bib
+	  fi
+
           # We'll run LaTeX first to generate the `.bcf' file (necessary
           # for `biber') and then run `biber' to generate the `.bbl' file.
-	  p=$$(pwd)
 	  export TEXINPUTS=$$p:
 	  cd $(texbdir);
 	  latex -shell-escape -halt-on-error $$p/paper.tex
@@ -137,5 +143,4 @@ paper.pdf: $(mtexdir)/project.tex paper.tex $(texbdir)/paper.bbl
           # file here.
 	  cd $$p
 	  cp $(texbdir)/$@ $(final-paper)
-
 	fi
-- 
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