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2021-01-03Spell check on main body and appendicesMohammad Akhlaghi-4/+4
I ran a simple Emacs spell check over the main body and the two appendices. All discovered typos have been fixed.
2021-01-03Minor corrections to the existing tools appendixRaul Infante-Sainz-136/+137
With this commit, I have corrected some minor typos of this appendix. In addition to that, I also put empty lines to separate subsections and subsubsections appropiately (5 lines and 1 line, respectively).
2021-01-03No links to main body in the appendices in --supplement modeMohammad Akhlaghi-3/+19
Until now, in the appendices we were simply using '\ref' to refer to different parts of the published paper. However, when built in '--supplement' mode, the main body of the paper is a separate PDF and having links to a separate PDF is not impossible, but far too complicated. However, having the links adds to the richness of the text and helps point readers to specific parts of the paper. With this commit, there is a LaTeX conditional anywhere in the appendices that we want to refer the reader to sections/figures in the main body. When building a separate PDF, the resepective section/figure is cited in a descriptive mode (like "Seciton discussing longevity of tools"). However, when the appendices go into the same PDF as the main body, the '\ref's remain.
2021-01-02Supplement (containing appendices) optionally built separatelyMohammad Akhlaghi-0/+16
Until now, the build strategy of the paper was to have a single output PDF that either contains (1) the full paper with appendices in the same paper (2) only the main body of the paper with no appencies. But the editor in chief of CiSE recently recommended publishing the appendices as supplements that is a separate PDF (on its webpage). So with this commit, the project can make either (1) a single PDF (containing both the main body and the appendices) that will be published on arXiv and will be the default output (this is the same as before). (2) two PDFs: one that is only the main body of the paper and another that is only the appendices. Since the appendices will be printed as a PDF in any case now, the old '--no-appendix' option has been replaced by '--supplement'. Also, the internal shell/TeX variable 'noappendix' has been renamed to 'separatesupplement'.
2020-12-30Each appendix moved to a separate .tex fileMohammad Akhlaghi-0/+537
As recommended by Lorena Barba (editor in chief of CiSE), we should prepare the appendices as a separate "Supplement" for the journal. But we also want them to be appendices within the paper when built for arXiv. As a first step, with this commit, each appendix has been put in a separate 'tex/src/appendix-*.tex' file and '\input' into the paper. We will then be able to conditionally include them in the PDF or not. Also, as recommended by Lorena, the general "necessity for reproducible research" appendix isn't included (possibly going into the webpage later).