diff options
Diffstat (limited to 'reproduce/software')
| -rw-r--r-- | reproduce/software/config/checksums.conf | 19 | ||||
| -rw-r--r-- | reproduce/software/config/versions.conf | 29 | ||||
| -rwxr-xr-x | reproduce/software/make/atlas-multiple.mk | 19 | ||||
| -rwxr-xr-x | reproduce/software/make/atlas-single.mk | 19 | ||||
| -rw-r--r-- | reproduce/software/make/basic.mk | 71 | ||||
| -rw-r--r-- | reproduce/software/make/build-rules.mk | 19 | ||||
| -rw-r--r-- | reproduce/software/make/high-level.mk | 47 | ||||
| -rw-r--r-- | reproduce/software/make/python.mk | 47 | ||||
| -rwxr-xr-x | reproduce/software/shell/bashrc.sh | 21 | ||||
| -rwxr-xr-x | reproduce/software/shell/configure.sh | 167 |
10 files changed, 292 insertions, 166 deletions
diff --git a/reproduce/software/config/checksums.conf b/reproduce/software/config/checksums.conf index 37fe64d..b173589 100644 --- a/reproduce/software/config/checksums.conf +++ b/reproduce/software/config/checksums.conf @@ -2,18 +2,15 @@ # # Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. diff --git a/reproduce/software/config/versions.conf b/reproduce/software/config/versions.conf index 0c2cd0b..d19f095 100644 --- a/reproduce/software/config/versions.conf +++ b/reproduce/software/config/versions.conf @@ -3,18 +3,15 @@ # Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # Copyright (C) 2019-2020 Raul Infante-Sainz <infantesainz@gmail.com> # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. @@ -46,7 +43,6 @@ metastore-version = 1.1.2-23-fa9170b mpc-version = 1.1.0 mpfr-version = 4.0.2 ncurses-version = 6.1 -openssl-version = 1.1.1a patchelf-version = 0.10 perl-version = 5.30.0 pkgconfig-version = 0.29.2 @@ -216,6 +212,11 @@ libgit2-version = 0.28.2 netpbm-version = 10.86.99 wcslib-version = 6.4 -# Minizip is installed as a part of `zlib', and they have the same version. -zlib-version = 1.2.11 +# Minizip is installed with the same `zlib' tarball, and they have the same +# version. minizip-version = $(zlib-version) + +# From version 1.2 OpenSSL may not need a manual addition, as described in +# its comments and `https://savannah.nongnu.org/bugs/?58263'. If it doesn't +# cause problems, put it back in the list of "Basic/low-level" tools. +openssl-version = 1.1.1a
\ No newline at end of file diff --git a/reproduce/software/make/atlas-multiple.mk b/reproduce/software/make/atlas-multiple.mk index b05d3f8..c98130d 100755 --- a/reproduce/software/make/atlas-multiple.mk +++ b/reproduce/software/make/atlas-multiple.mk @@ -10,18 +10,15 @@ # # Copyright (C) 2019-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. ORIGLDFLAGS := $(LDFLAGS) diff --git a/reproduce/software/make/atlas-single.mk b/reproduce/software/make/atlas-single.mk index 61ae9a1..82eade9 100755 --- a/reproduce/software/make/atlas-single.mk +++ b/reproduce/software/make/atlas-single.mk @@ -10,18 +10,15 @@ # # Copyright (C) 2019-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. ORIGLDFLAGS := $(LDFLAGS) diff --git a/reproduce/software/make/basic.mk b/reproduce/software/make/basic.mk index d1fbc3f..0bec163 100644 --- a/reproduce/software/make/basic.mk +++ b/reproduce/software/make/basic.mk @@ -18,18 +18,15 @@ # Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # Copyright (C) 2019-2020 Raul Infante-Sainz <infantesainz@gmail.com> # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. # Top level environment @@ -159,14 +156,18 @@ tarballs = $(foreach t, bash-$(bash-version).tar.lz \ , $(tdir)/$(t) ) $(tarballs): $(tdir)/%: | $(lockdir) - n=$$(echo $* | sed -e's/[0-9\-]/ /g' \ - -e's/\./ /g' \ + # Remove the version numbers and suffix from the tarball name so we + # can search more easily only with the program name. This requires + # the first character of the version to be a digit: packages such + # as `foo' and `foo-3' will not be distinguished, but `foo' and + # `foo2' will be distinguished. + n=$$(echo $* | sed -e's/-[0-9]/ /' -e's/\./ /g' \ | awk '{print $$1}' ); \ \ mergenames=1; \ if [ $$n = bash ]; then c=$(bash-checksum); w=http://akhlaghi.org/maneage-software; \ elif [ $$n = binutils ]; then c=$(binutils-checksum); w=http://ftp.gnu.org/gnu/binutils; \ - elif [ $$n = bzip ]; then c=$(bzip2-checksum); w=http://akhlaghi.org/maneage-software; \ + elif [ $$n = bzip2 ]; then c=$(bzip2-checksum); w=http://akhlaghi.org/maneage-software; \ elif [ $$n = cert ]; then c=$(cert-checksum); w=http://akhlaghi.org/maneage-software; \ elif [ $$n = coreutils ]; then c=$(coreutils-checksum); w=http://ftp.gnu.org/gnu/coreutils;\ elif [ $$n = curl ]; then c=$(curl-checksum); w=https://curl.haxx.se/download; \ @@ -184,7 +185,7 @@ $(tarballs): $(tdir)/%: | $(lockdir) elif [ $$n = libiconv ]; then c=$(libiconv-checksum); w=https://ftp.gnu.org/pub/gnu/libiconv; \ elif [ $$n = libtool ]; then c=$(libtool-checksum); w=http://ftp.gnu.org/gnu/libtool; \ elif [ $$n = lzip ]; then c=$(lzip-checksum); w=http://download.savannah.gnu.org/releases/lzip; \ - elif [ $$n = m ]; then \ + elif [ $$n = m4 ]; then \ mergenames=0; \ c=$(m4-checksum); \ w=http://akhlaghi.org/maneage-software/m4-1.4.18-patched.tar.gz; \ @@ -199,7 +200,7 @@ $(tarballs): $(tdir)/%: | $(lockdir) c=$(perl-checksum); \ v=$$(echo $(perl-version) | sed -e's/\./ /g' | awk '{printf("%d.0", $$1)}'); \ w=https://www.cpan.org/src/$$v; \ - elif [ $$n = pkg ]; then c=$(pkgconfig-checksum); w=http://pkg-config.freedesktop.org/releases; \ + elif [ $$n = pkg-config ]; then c=$(pkgconfig-checksum); w=http://pkg-config.freedesktop.org/releases; \ elif [ $$n = readline ]; then c=$(readline-checksum); w=http://ftp.gnu.org/gnu/readline; \ elif [ $$n = sed ]; then c=$(sed-checksum); w=http://ftp.gnu.org/gnu/sed; \ elif [ $$n = tar ]; then c=$(tar-checksum); w=http://ftp.gnu.org/gnu/tar; \ @@ -804,6 +805,14 @@ $(ibidir)/openssl: $(tdir)/cert.pem \ # environment variable. # # https://wiki.openssl.org/index.php/Compilation_and_Installation + # + # Bug 58263 (https://savannah.nongnu.org/bugs/?58263): In OpenSSL + # Version 1.1.1a (also checked in 1.1.1g), `openssl/ec.h' fails to + # include `openssl/openconf.h' on some OSs. The SED hack below + # inserts a hardwired element of `openssl/openconf.h' that is + # needed to include sections of code `f` that are deprecated in + # 1.2.0, but not yet in 1.1.1. This problem may be solved in + # version 1.2.x, so please check again in that bug. if [ x$(on_mac_os) = xyes ]; then \ export KERNEL_BITS=64; \ copt="shared no-ssl2 no-ssl3 enable-ec_nistp_64_gcc_128"; \ @@ -816,6 +825,9 @@ $(ibidir)/openssl: $(tdir)/cert.pem \ --with-zlib-lib=$(ildir) \ --with-zlib-include=$(idir)/include, \ -j$(numthreads), , ./config ) \ + && mv -v $(idir)/include/openssl/ec.h $(idir)/include/openssl/ec.h.orig \ + && sed -e 's,\(# include .openssl/opensslconf\.h.\),\1\n#ifndef DEPRECATEDIN_1_2_0\n#define DEPRECATEDIN_1_2_0(f) f;\n#endif\n,' \ + $(idir)/include/openssl/ec.h.orig > $(idir)/include/openssl/ec.h \ && cp $(tdir)/cert.pem $(idir)/etc/ssl/cert.pem \ && if [ $$? = 0 ]; then \ if [ x$(on_mac_os) = xyes ]; then \ @@ -1296,8 +1308,8 @@ $(ibidir)/gcc: | $(ibidir)/binutils \ tar xf $(word 1,$(filter $(tdir)/%,$|)); \ if [ $$odir != $(ddir) ]; then \ ln -s $$odir/gcc-$(gcc-version) $(ddir)/gcc-$(gcc-version); \ - fi \ - && cd gcc-$(gcc-version) \ + fi; \ + if cd gcc-$(gcc-version) \ && mkdir build \ && cd build \ && ../configure SHELL=$(ibdir)/bash \ @@ -1346,6 +1358,25 @@ $(ibidir)/gcc: | $(ibidir)/binutils \ rm -rf $$odir; \ rm $(ddir)/gcc-$(gcc-version); \ fi \ - && ln -sf $(ibdir)/gcc $(ibdir)/cc \ - && echo "GNU Compiler Collection (GCC) $(gcc-version)" > $@; \ + && ln -sf $(ibdir)/gcc $(ibdir)/cc; \ + then \ + echo "GNU Compiler Collection (GCC) $(gcc-version)" > $@; \ + else echo; echo; echo; \ + echo "_________________________________________________"; \ + echo "!!!!!!!! Warning from Maneage !!!!!!!!"; \ + echo; \ + echo "Unfortunately building of GCC failed on this system!"; \ + echo "Can you please copy the last ~500 lines above and post it"; \ + echo "as a bug here (as an attached file):"; \ + echo " https://sv.nongnu.org/support/?func=additem&group=reproduce"; \ + echo; \ + echo "In the meantime, please re-configure Maneage with '--host-cc'"; \ + echo "like below so it uses your own C compiler for building the"; \ + echo "high-level software ('-e' is to use the existing configuration):"; \ + echo; \ + echo " ./project configure -e --host-cc"; \ + echo; \ + echo "__________ SEE NOTE FROM MANEAGE ABOVE __________"; \ + echo; exit 1; \ + fi; \ fi diff --git a/reproduce/software/make/build-rules.mk b/reproduce/software/make/build-rules.mk index f3ca7d2..8d78ce3 100644 --- a/reproduce/software/make/build-rules.mk +++ b/reproduce/software/make/build-rules.mk @@ -5,18 +5,15 @@ # # Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk index ce617af..ffab19c 100644 --- a/reproduce/software/make/high-level.mk +++ b/reproduce/software/make/high-level.mk @@ -11,18 +11,15 @@ # Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # Copyright (C) 2019-2020 Raul Infante-Sainz <infantesainz@gmail.com> # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. @@ -206,17 +203,19 @@ tarballs = $(foreach t, apachelog4cxx-$(apachelog4cxx-version).tar.lz \ , $(tdir)/$(t) ) $(tarballs): $(tdir)/%: | $(lockdir) - # Remove all numbers, `-' and `.' from the tarball name so we can - # search more easily only with the program name. - @n=$$(echo $* | sed -e's/[0-9\-]/ /g' -e's/\./ /g' \ - | awk '{print $$1}' ) + # Remove the version numbers and suffix from the tarball name so we + # can search more easily only with the program name. This requires + # the first character of the version to be a digit: packages such + # as `foo' and `foo-3' will not be distinguished, but `foo' and + # `foo2' will be distinguished. + @n=$$(echo $* | sed -e's/-[0-9]/ /' -e's/\./ /g' \ + | awk '{print $$1}' ) # Set the top download link of the requested tarball. mergenames=1 - if [ $$n = apachelog ]; then c=$(apachelog4cxx-checksum); w=http://akhlaghi.org/maneage-software - elif [ $* = apr-util-$(apr-util-version).tar.gz ]; then - c=$(apr-util-checksum); w=https://www-us.apache.org/dist/apr + if [ $$n = apachelog4cxx ]; then c=$(apachelog4cxx-checksum); w=http://akhlaghi.org/maneage-software elif [ $$n = apr ]; then c=$(apr-checksum); w=https://www-us.apache.org/dist/apr + elif [ $$n = apr-util ]; then c=$(apr-util-checksum); w=https://www-us.apache.org/dist/apr elif [ $$n = astrometry ]; then c=$(astrometrynet-checksum); w=http://astrometry.net/downloads elif [ $$n = atlas ]; then mergenames=0 @@ -259,29 +258,29 @@ $(tarballs): $(tdir)/%: | $(lockdir) w=https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs$$v elif [ $$n = gnuastro ]; then c=$(gnuastro-checksum); w=http://ftp.gnu.org/gnu/gnuastro elif [ $$n = gsl ]; then c=$(gsl-checksum); w=http://ftp.gnu.org/gnu/gsl - elif [ $$n = hdf ]; then + elif [ $$n = hdf5 ]; then mergenames=0 c=$(hdf5-checksum) majorver=$$(echo $(hdf5-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}') w=https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$$majorver/hdf5-$(hdf5-version)/src/$* elif [ $$n = healpix ]; then c=$(healpix-checksum); w=http://akhlaghi.org/maneage-software - elif [ $$n = help ]; then c=$(help2man-checksum); w=http://ftp.gnu.org/gnu/help2man + elif [ $$n = help2man ]; then c=$(help2man-checksum); w=http://ftp.gnu.org/gnu/help2man elif [ $$n = imagemagick ]; then c=$(imagemagick-checksum); w=http://akhlaghi.org/maneage-software elif [ $$n = imfit ]; then mergenames=0 c=$(imfit-checksum) w=http://www.mpe.mpg.de/~erwin/resources/imfit/imfit-$(imfit-version)-source.tar.gz - elif [ $$n = install ]; then c=NO-CHECK-SUM; w=http://mirror.ctan.org/systems/texlive/tlnet + elif [ $$n = install-tl-unx ]; then c=NO-CHECK-SUM; w=http://mirror.ctan.org/systems/texlive/tlnet elif [ $$n = jpegsrc ]; then c=$(libjpeg-checksum); w=http://ijg.org/files elif [ $$n = lapack ]; then c=$(lapack-checksum); w=http://www.netlib.org/lapack elif [ $$n = libnsl ]; then c=$(libnsl-checksum); w=http://akhlaghi.org/maneage-software elif [ $$n = libpng ]; then c=$(libpng-checksum); w=https://download.sourceforge.net/libpng - elif [ $$n = libgit ]; then + elif [ $$n = libgit2 ]; then mergenames=0 c=$(libgit2-checksum) w=https://github.com/libgit2/libgit2/archive/v$(libgit2-version).tar.gz elif [ $$n = libtirpc ]; then c=$(libtirpc-checksum); w=https://downloads.sourceforge.net/libtirpc - elif [ $$n = libxml ]; then c=$(libxml2-checksum); w=ftp://xmlsoft.org/libxml2 + elif [ $$n = libxml2 ]; then c=$(libxml2-checksum); w=ftp://xmlsoft.org/libxml2 elif [ $$n = missfits ]; then c=$(missfits-checksum); w=https://www.astromatic.net/download/missfits elif [ $$n = netpbm ]; then c=$(netpbm-checksum); w=http://akhlaghi.org/maneage-software elif [ $$n = openblas ]; then @@ -298,7 +297,7 @@ $(tarballs): $(tdir)/%: | $(lockdir) elif [ $$n = R ]; then c=$(R-checksum); majver=$$(echo $(R-version) | sed -e's/\./ /g' | awk '{print $$1}') w=https://cran.r-project.org/src/base/R-$$majver - elif [ $$n = rpcsvc ]; then c=$(rpcsvc-proto-checksum); w=https://github.com/thkukuk/rpcsvc-proto/releases/download/v$(rpcsvc-proto-version) + elif [ $$n = rpcsvc-proto ]; then c=$(rpcsvc-proto-checksum); w=https://github.com/thkukuk/rpcsvc-proto/releases/download/v$(rpcsvc-proto-version) elif [ $$n = scamp ]; then c=$(scamp-checksum); w=http://akhlaghi.org/maneage-software elif [ $$n = scons ]; then mergenames=0 diff --git a/reproduce/software/make/python.mk b/reproduce/software/make/python.mk index 1ef1bf2..f378650 100644 --- a/reproduce/software/make/python.mk +++ b/reproduce/software/make/python.mk @@ -11,18 +11,15 @@ # Copyright (C) 2019-2020 Raul Infante-Sainz <infantesainz@gmail.com> # Copyright (C) 2019-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # -# This Makefile is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This Makefile is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This Makefile is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. @@ -134,16 +131,18 @@ $(pytarballs): $(tdir)/%: # first string. @if [ $* = python-dateutil-$(python-dateutil-version).tar.gz ]; then n=dateutil - elif [ $* = h5py-$(h5py-version).tar.gz ]; then - n=h5py # elif [ $* = strange-tarball5name-version.tar.gz ]; then # n=strange5-name else - # Remove all numbers, `-' and `.' from the tarball name so we can - # search more easily only with the program name. - n=$$(echo $* | sed -e's/[0-9\-]/ /g' -e's/\./ /g' \ - | awk '{print $$1}') + # Remove the version numbers and suffix from the tarball name so + # we can search more easily only with the program name. This + # requires the first character of the version to be a digit: + # packages such as `foo' and `foo-3' will not be distinguished, + # but `foo' and `foo2' will be distinguished. + n=$$(echo $* | sed -e's/-[0-9]/ /' -e's/\./ /g' \ + | awk '{print $$1}' ) + fi # Set the top download link of the requested tarball. The ones @@ -183,11 +182,11 @@ $(pytarballs): $(tdir)/%: c=$(secretstorage-checksum) hash=a6/89/df343dbc2957a317127e7ff2983230dc5336273be34f2e1911519d85aeb5 h=$(pytopurl)/$$hash/SecretStorage-$(secretstorage-version).tar.gz - elif [ $$n = asn ]; then h=fc/f1/8db7daa71f414ddabfa056c4ef792e1461ff655c2ae2928a2b675bfed6b4; c=$(asn1crypto-checksum) + elif [ $$n = asn1crypto ]; then h=fc/f1/8db7daa71f414ddabfa056c4ef792e1461ff655c2ae2928a2b675bfed6b4; c=$(asn1crypto-checksum) elif [ $$n = asteval ]; then h=50/3f/29b7935c6dc09ee96dc347edc66c57e8ef68d595dd35b763a36a117acc8c; c=$(asteval-checksum) elif [ $$n = astroquery ]; then h=e2/af/a3cd3b30745832a0e81f5f13327234099aaf5d03b7979ac947a888e68e91; c=$(astroquery-checksum) elif [ $$n = astropy ]; then h=de/96/7feaca4b9be134128838395a9d924ea0b389ed4381702dcd9d11ae31789f; c=$(astropy-checksum) - elif [ $$n = beautifulsoup ]; then h=80/f2/f6aca7f1b209bb9a7ef069d68813b091c8c3620642b568dac4eb0e507748; c=$(beautifulsoup4-checksum) + elif [ $$n = beautifulsoup4 ]; then h=80/f2/f6aca7f1b209bb9a7ef069d68813b091c8c3620642b568dac4eb0e507748; c=$(beautifulsoup4-checksum) elif [ $$n = certifi ]; then h=55/54/3ce77783acba5979ce16674fc98b1920d00b01d337cfaaf5db22543505ed; c=$(certifi-checksum) elif [ $$n = cffi ]; then h=64/7c/27367b38e6cc3e1f49f193deb761fe75cda9f95da37b67b422e62281fcac; c=$(cffi-checksum) elif [ $$n = chardet ]; then h=fc/bb/a5768c230f9ddb03acc9ef3f0d4a3cf93462473795d18e9535498c8f929d; c=$(chardet-checksum) @@ -198,23 +197,23 @@ $(pytarballs): $(tdir)/%: elif [ $$n = emcee ]; then h=f0/c0/cd433f2aedeef9b1e5ed7d236c82564f7518fe7fe2238fa141ea9ce08e73; c=$(emcee-checksum) elif [ $$n = entrypoints ]; then h=b4/ef/063484f1f9ba3081e920ec9972c96664e2edb9fdc3d8669b0e3b8fc0ad7c; c=$(entrypoints-checksum) elif [ $$n = esutil ]; then h=5b/91/77e38282fd3d47b55e351544ab179eb209b309a8d2d40f8cdb6241beda00; c=$(esutil-checksum) - elif [ $$n = flake ]; then h=8d/a7/99222c9200af533c1ecb1120d99adbd1c033b57296ac5cb39d121db007a8; c=$(flake8-checksum) + elif [ $$n = flake8 ]; then h=8d/a7/99222c9200af533c1ecb1120d99adbd1c033b57296ac5cb39d121db007a8; c=$(flake8-checksum) elif [ $$n = future ]; then h=3f/bf/57733d44afd0cf67580658507bd11d3ec629612d5e0e432beb4b8f6fbb04; c=$(future-checksum) elif [ $$n = h5py ]; then h=43/27/a6e7dcb8ae20a4dbf3725321058923fec262b6f7835179d78ccc8d98deec; c=$(h5py-checksum) - elif [ $$n = html ]; then h=85/3e/cf449cf1b5004e87510b9368e7a5f1acd8831c2d6691edd3c62a0823f98f; c=$(html5lib-checksum) + elif [ $$n = html5lib ]; then h=85/3e/cf449cf1b5004e87510b9368e7a5f1acd8831c2d6691edd3c62a0823f98f; c=$(html5lib-checksum) elif [ $$n = idna ]; then h=ad/13/eb56951b6f7950cadb579ca166e448ba77f9d24efc03edd7e55fa57d04b7; c=$(idna-checksum) elif [ $$n = jeepney ]; then h=16/1d/74adf3b164a8d19a60d0fcf706a751ffa2a1eaa8e5bbb1b6705c92a05263; c=$(jeepney-checksum) elif [ $$n = keyring ]; then h=15/88/c6ce9509438bc02d54cf214923cfba814412f90c31c95028af852b19f9b2; c=$(keyring-checksum) elif [ $$n = kiwisolver ]; then h=31/60/494fcce70d60a598c32ee00e71542e52e27c978e5f8219fae0d4ac6e2864; c=$(kiwisolver-checksum) elif [ $$n = lmfit ]; then h=59/6e/117794cf85b7345361877e49245870490ae438f1981dea3c6af1316b30e7; c=$(lmfit-checksum) elif [ $$n = matplotlib ]; then h=12/d1/7b12cd79c791348cb0c78ce6e7d16bd72992f13c9f1e8e43d2725a6d8adf; c=$(matplotlib-checksum) - elif [ $$n = mpi ]; then h=04/f5/a615603ce4ab7f40b65dba63759455e3da610d9a155d4d4cece1d8fd6706; c=$(mpi4py-checksum) + elif [ $$n = mpi4py ]; then h=04/f5/a615603ce4ab7f40b65dba63759455e3da610d9a155d4d4cece1d8fd6706; c=$(mpi4py-checksum) elif [ $$n = mpmath ]; then h=ca/63/3384ebb3b51af9610086b23ea976e6d27d6d97bf140a76a365bd77a3eb32; c=$(mpmath-checksum) elif [ $$n = numpy ]; then h=ac/36/325b27ef698684c38b1fe2e546e2e7ef9cecd7037bcdb35c87efec4356af; c=$(numpy-checksum) elif [ $$n = pexpect ]; then h=1c/b1/362a0d4235496cb42c33d1d8732b5e2c607b0129ad5fdd76f5a583b9fcb3; c=$(pexpect-checksum) elif [ $$n = pip ]; then h=4c/4d/88bc9413da11702cbbace3ccc51350ae099bb351febae8acc85fec34f9af; c=$(pip-checksum) elif [ $$n = pkgconfig ]; then h=6e/a9/ff67ef67217dfdf2aca847685fe789f82b931a6957a3deac861297585db6; c=$(pypkgconfig-checksum) - elif [ $$n = pybind ]; then h=aa/91/deb6743e79e22ab01502296570b39b8404f10cc507a6692d612a7fee8d51; c=$(pybind11-checksum) + elif [ $$n = pybind11 ]; then h=aa/91/deb6743e79e22ab01502296570b39b8404f10cc507a6692d612a7fee8d51; c=$(pybind11-checksum) elif [ $$n = pycodestyle ]; then h=1c/d1/41294da5915f4cae7f4b388cea6c2cd0d6cd53039788635f6875dfe8c72f; c=$(pycodestyle-checksum) elif [ $$n = pycparser ]; then h=68/9e/49196946aee219aead1290e00d1e7fdeab8567783e83e1b9ab5585e6206a; c=$(pycparser-checksum) elif [ $$n = pyflakes ]; then h=52/64/87303747635c2988fcaef18af54bfdec925b6ea3b80bcd28aaca5ba41c9e; c=$(pyflakes-checksum) @@ -230,7 +229,7 @@ $(pytarballs): $(tdir)/%: elif [ $$n = soupsieve ]; then h=0c/52/e9088bb9b96e2d39fc3b33fcda5b4fde9d71473536ac660a1ca9a0958a2f; c=$(soupsieve-checksum) elif [ $$n = sympy ]; then h=54/2e/6adb11fe599d4cfb7e8833753350ac51aa2c0603c226b36f9051cc9d2425; c=$(sympy-checksum) elif [ $$n = uncertainties ]; then h=2a/c2/babbe5b16141859dd799ed31c03987100a7b6d0ca7c0ed4429c96ce60fdf; c=$(uncertainties-checksum) - elif [ $$n = urllib ]; then h=b1/53/37d82ab391393565f2f831b8eedbffd57db5a718216f82f1a8b4d381a1c1; c=$(urllib3-checksum) + elif [ $$n = urllib3 ]; then h=b1/53/37d82ab391393565f2f831b8eedbffd57db5a718216f82f1a8b4d381a1c1; c=$(urllib3-checksum) elif [ $$n = virtualenv ]; then h=51/aa/c395a6e6eaaedfa5a04723b6446a1df783b16cca6fec66e671cede514688; c=$(virtualenv-checksum) elif [ $$n = webencodings ]; then h=0b/02/ae6ceac1baeda530866a85075641cec12989bd8d31af6d5ab4a3e8c92f47; c=$(webencodings-checksum) # elif [ $$n = strange5-name ]; then h=XXXXX; c=$(XXXXX-checksum) diff --git a/reproduce/software/shell/bashrc.sh b/reproduce/software/shell/bashrc.sh index b2a151f..69bbba6 100755 --- a/reproduce/software/shell/bashrc.sh +++ b/reproduce/software/shell/bashrc.sh @@ -31,15 +31,12 @@ # # Copyright (C) 2019-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # -# This script is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. -# -# This script is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# This script is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. +# +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. diff --git a/reproduce/software/shell/configure.sh b/reproduce/software/shell/configure.sh index dc93d80..71b07cc 100755 --- a/reproduce/software/shell/configure.sh +++ b/reproduce/software/shell/configure.sh @@ -4,18 +4,18 @@ # # Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> # -# This script is free software: you can redistribute it and/or modify it -# under the terms of the GNU General Public License as published by the -# Free Software Foundation, either version 3 of the License, or (at your -# option) any later version. +# This script is part of Maneage. Maneage is free software: you can +# redistribute it and/or modify it under the terms of the GNU General +# Public License as published by the Free Software Foundation, either +# version 3 of the License, or (at your option) any later version. # -# This script is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General -# Public License for more details. -# -# A copy of the GNU General Public License is available at -# <http://www.gnu.org/licenses/>. +# Maneage is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for +# more details. See <http://www.gnu.org/licenses/>. + + + # Script settings @@ -93,6 +93,64 @@ absolute_dir () +# Check file permission handling (POSIX-compatibility) +# ---------------------------------------------------- +# +# Check if a `given' directory handles permissions as expected. +# +# This is to prevent a known bug in the NTFS filesystem that prevents +# proper installation of Perl, and probably some other packages. This +# function receives the directory as an argument and then, creates a dummy +# file, and examines whether the given directory handles the file +# permissions as expected. +# +# Returns `0' if everything is fine, and `255' otherwise. Choosing `0' is +# to mimic the `$ echo $?' behavior, while choosing `255' is to prevent +# misunderstanding 0 and 1 as true and false. +# +# ===== CAUTION! ===== # +# +# Since there is a `set -e' before running this function, the whole script +# stops and exits IF the `check_permission' (or any other function) returns +# anything OTHER than `0'! So, only use this function as a test. Here's a +# minimal example: +# +# if $(check_permission $some_directory) ; then +# echo "yay"; else "nay"; +# fi ; +check_permission () +{ + # Make a `junk' file, activate its executable flag and record its + # permissions generally. + local junkfile=$1/check_permission_tmp_file + rm -f $junkfile + echo "Don't let my short life go to waste" > $junkfile + chmod +x $junkfile + local perm_before=$(ls -l $junkfile | awk '{print $1}') + + # Now, remove the executable flag and record the permissions. + chmod -x $junkfile + local perm_after=$(ls -l $junkfile | awk '{print $1}') + + # Clean up before leaving the function + rm -f $junkfile + + # If the permissions are equal, the filesystem doesn't allow + # permissions. + if [ $perm_before = $perm_after ]; then + # Setting permission FAILED + return 1 + else + # Setting permission SUCCESSFUL + return 0 + fi +} + + + + + + # Check for C/C++ compilers # ------------------------- # @@ -241,7 +299,7 @@ rm -f $testprog $testsource # See if the C compiler can build static libraries # ------------------------------------------------ - +# # We are manually only working with shared libraries: because some # high-level programs like Wget and cURL need dynamic linking and if we # build the libraries statically, our own builds will be ignored and these @@ -258,6 +316,44 @@ static_build=no +# Check for GNU gettext +# --------------------- +# +# Some of the basic sofware need GNU gettext which we don't yet install. +has_gettext=0 +if type msgfmt > /dev/null 2>/dev/null; then has_gettext=1; fi +if [ $has_gettext = 0 ]; then + cat <<EOF +______________________________________________________ +!!!!!!! GNU gettext NOT FOUND !!!!!!! + +Some of the core programs in Maneage require a running GNU gettext on the +host. Unfortuantely we haven't had the time yet to include its installation +in Maneage, but it is defined as task #15616 so we don't forget. Generally, +GNU gettext is already available on many systems, so it hasn't been +reported too commonly. But please consider helping in this if you have +time and interest. + +Until we include gettext's installation in Maneage, please use your package +manager to install GNU gettext, then re-run the configuration to +continue. Here are the relevant commands on some common GNU/Linux +distributions (you'll only need one of them, or a similar command, if you +use another package manager): + + apt install gettext + yum install gettext + pacman -S gettext + +!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! + +EOF + exit 1 +fi + + + + + # If we are on a Mac OS system # ---------------------------- # @@ -287,7 +383,6 @@ ______________________________________________________ EOF sleep 5 else - host_cc=0 on_mac_os=no fi @@ -653,21 +748,20 @@ EOF bdir=$(absolute_dir $build_dir) rm -rf $build_dir/$junkname else - echo " -- Can't write in '$build_dir'"; echo + echo " ** Can't write in '$build_dir'"; echo fi else if mkdir $build_dir 2> /dev/null; then instring="the newly created" bdir=$(absolute_dir $build_dir) else - echo " -- Can't create '$build_dir'"; echo + echo " ** Can't create '$build_dir'"; echo fi fi # If its given, make sure it isn't a subdirectory of the source # directory. if ! [ x"$bdir" = x ]; then - echo "Given build directory: $bdir" if echo "$bdir/" \ | grep '^'$currentdir 2> /dev/null > /dev/null; then @@ -676,17 +770,30 @@ EOF # Inform the user that this is not acceptable and reset `bdir'. bdir= - echo " -- The build-directory cannot be under the source-directory." - echo " Please specify another build-directory that is outside of the source." - echo "" - else - echo " -- Build directory set to ($instring): '$bdir'" + echo " ** The build-directory cannot be under the source-directory." + fi + fi + + # If everything is fine until now, see if we're able to manipulate + # file permissions. + if ! [ x"$bdir" = x ]; then + if ! $(check_permission $bdir); then + bdir= + echo " ** File permissions can't be modified in this directory" fi fi - # Reset `build_dir' to blank, so it continues asking when the - # previous value wasn't usable. - build_dir= + # If the build directory was good, the loop will stop, if not, + # reset `build_dir' to blank, so it continues asking for another + # directory and let the user know that they must select a new + # directory. + if [ x$bdir = x ]; then + build_dir= + echo " ** Please select another directory." + echo "" + else + echo " -- Build directory set to ($instring): '$bdir'" + fi done fi @@ -1405,12 +1512,16 @@ cat <<EOF ---------------- The project and its environment are configured with no errors. -Please run the following command to start. +To change the configuration later, you can re-run './project configure' or +manually edit 'reproduce/software/config/LOCAL.conf'. Just be careful with +the build-directory: its location is hard-coded in the installed software +so if you change it manually, many of the project's software will crash. If +you have to use another built-directory, just re-configure a clean project +there. + +Please run the following command to start the project. (Replace '8' with the number of CPU threads on your system) $buildcommand -To change the configuration later, please re-run './project configure', DO -NOT manually edit the relevant files. - EOF |