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-rw-r--r--reproduce/software/config/checksums.conf12
-rwxr-xr-xreproduce/software/config/software_acknowledge_context.sh112
-rw-r--r--reproduce/software/config/urls.conf159
-rw-r--r--reproduce/software/config/versions.conf93
-rw-r--r--[-rwxr-xr-x]reproduce/software/make/atlas-multiple.mk0
-rw-r--r--[-rwxr-xr-x]reproduce/software/make/atlas-single.mk0
-rw-r--r--reproduce/software/make/basic.mk1496
-rw-r--r--reproduce/software/make/build-rules.mk139
-rw-r--r--reproduce/software/make/high-level.mk1575
-rw-r--r--reproduce/software/make/python.mk929
-rwxr-xr-xreproduce/software/shell/configure.sh139
-rwxr-xr-xreproduce/software/shell/pre-make-build.sh81
-rwxr-xr-xreproduce/software/shell/run-parts.in71
13 files changed, 2588 insertions, 2218 deletions
diff --git a/reproduce/software/config/checksums.conf b/reproduce/software/config/checksums.conf
index e23df9f..2da488b 100644
--- a/reproduce/software/config/checksums.conf
+++ b/reproduce/software/config/checksums.conf
@@ -38,7 +38,7 @@ libiconv-checksum = 365dac0b34b4255a0066e8033a8b3db4bdb94b9b57a9dca17ebf2d779139
libtool-checksum = a6eef35f3cbccf2c9e2667f44a476ebc80ab888725eb768e91a3a6c33b8c931afc46eb23efaee76c8696d3e4eed74ab1c71157bcb924f38ee912c8a90a6521a4
libunistring-checksum = 01dcab6e05ea4c33572bf96cc0558bcffbfc0e62fc86410cef06c1597a0073d5750525fe2dee4fdb39c9bd704557fcbab864f9645958108a2e07950bc539fe54
libxml2-checksum = cb7784ba4e72e942614e12e4f83f4ceb275f3d738b30e3b5c1f25edf8e9fa6789e854685974eed95b362049dbf6c8e7357e0327d64c681ed390534ac154e6810
-lzip-checksum = e3331bbf0166541332182a9a28c2e08f522735ef668a06dfa26055251d5142a09227d97e6ae50b38c0b8805479a307a9e55c81b120d5befad2fde44676261843
+lzip-checksum = e2e229899002072322a5bf7fb7ef37ff7cc2d0ded7d6525679ac29cec5c1534de89f76bc01e15c3d76584099957d596b9e5b32d3f9cbfc6bc8d6370fc67d7d96
m4-checksum = a92cad4441b3fd7c033837389ca3499494523d364a5fda043d92c517051510f1758b3b837f0477f42d2258a179ab79a4993e5d1694ef2673db6d96d1faff84fe
make-checksum = ddf0fdcb9ee1b182ef294c5da70c1275288c99bef60e63a25c0abed2ddd44aba1770be4aab1db8cac81e5f624576f2127c5d825a1824e1c7a49df4f16445526b
metastore-checksum = b2a5fdde9de5ddc1e6c368d5da1b2e97e4fdbaa138a7be281ccb40a81dd4a9bb1849d36b2d5d3f01205079bace60441f82a7002097ff3a7037340a35b0f1574a
@@ -80,7 +80,7 @@ atlas-checksum = bf17306f09f2aa973cb776e2c9eacfb2409ad4d95d19802e1c4e0597d0a099f
autoconf-checksum = c25e834251bfc2befe822614caf1c80d7e1314a83e7173304abc235fd15a958b8db9fbc801e8ad98328dfd6d9dbc425bfbbefec500fa268992ae7bbf4fa5bc35
automake-checksum = 47b0120a59e3e020529a6ce750297d7de1156fd2be38db5d101e50120f11b40c28741ecd5eacf2790a9e25386713dcf7717339cfa5d7943d0dbf47c417383448
bison-checksum = 00d2b37187b93100ec4b220ce2752d12ccf68f9d0d39b380d375d36dd8a22aa1d6e60156918f95e4493f9531c5d42d8fad38fd807307b491c1ca7ca4177823d9
-boost-checksum = 4378e20f18db9f186ac0f38ad98c522526e0fe48a8deb968c41325e3f69e733be3298505e91ea713e79a9d9e741305fa879d289f74e6276e0ec7286f03be87fc
+boost-checksum = 2844dddd3357e76909f2f3d008f686949f8b54aed29e1c650e18becd0b50701a273bb3754f1a4e56c0c056693b27c354c9ba54ddbec92599e192c2f6736fe3be
cairo-checksum = 9eb27c4cf01c0b8b56f2e15e651f6d4e52c99d0005875546405b64f1132aed12fbf84727273f493d84056a13105e065009d89e94a8bfaf2be2649e232b82377f
cdsclient-checksum = 2d7abf0079189b9dd19cb8919061445fd19ea9f7dfd54e8ceee26b743218cf62ab00eba0147abe82d9294223927f04b4cc3328620dfc9184a7049f8d515b29e4
cfitsio-checksum = c0502699e266928dd25abe57730dc4b357ccc9023789fe745324ae01aa688516aceaf37321ee578f0430111d9718f0fec0dc5b54c07f935529560f00b32ce1e3
@@ -88,7 +88,7 @@ cmake-checksum = f09440681e0c414f5ca669f3aeba6666d09e0642f30a2e12c3199e7fb3da95a
eigen-checksum = 34cf600914cce719d61511577ef9cd26fbdcb7a6fad1d0ab8396f98b887fac6a5577d3967e84a8f56225cc50de38f3b91f34f447d14312028383e32b34ea1972
expat-checksum = 514ff2ef3c93af0b1715b7a08732db33c13a113c4c72422716a22ee26c09235deed71ec55510cee24c33bcd6b2347602bd71ce70a432d5583fb63765ff9e0e09
fftw-checksum = ab918b742a7c7dcb56390a0a0014f517a6dff9a2e4b4591060deeb2c652bf3c6868aa74559a422a276b853289b4b701bdcbd3d4d8c08943acf29167a7be81a38
-flex-checksum = e9785f3d620a204b7d20222888917dc065c2036cae28667065bf7862dfa1b25235095a12fd04efdbd09bfd17d3452e6b9ef953a8c1137862ff671c97132a082e
+flex-checksum = b4ef58d4a1d66b213e2f59df06959decf46d26b253cdc3f51cd26e2e2b505461ef23dafa974dd2005b1f0cafa5a83fe9258baf78004b2fdae6dfc299bc17bfd1
freetype-checksum = 02f0f4211f9cee5b5e46ebe61190482fca5b41bc26be06fcf0d2d717e9fb119229308398c420eeea476fa2511ca2d52948f1a3242efad30ca82ed0b07cd50e3a
gdb-checksum = b4161df5adfce3eb51b3b3fc6072b2ef9f612f5e0f95b25bc57382812854836e9d1b24807c68cc8987e37e90112c6d75ffc1de3ea67a9f92858b4ce1af85c479
ghostscript-checksum = acee64fae78771bffa19b0b2bfaba3c345b420f93ceb4fc9df5fb705f785c8ed720fde2aef53546fac6aca2f7366c64c68a6e373a71999a42dc71aadc9aa782f
@@ -104,15 +104,17 @@ libffi-checksum = 980ca30a8d76f963fca722432b1fe5af77d7a4e4d2eac5144fbc5374d4c596
libgit2-checksum = 0879c162e2e1dc00eadfbda22cd1f9d3a95b4ec2b653c108983f37c2f695140882de4d50d7cbc04ced247125a4e9fe6df16130e1267891aecdb2411d920db5c6
libjpeg-checksum = 74ea5af3545657d4ac03f8f7933913112cc2d982f0e379d0e5647f1acac21931468e53806297c30ebe180c7bcf84919a0ac20a4195afb03db03060d57904ef6c
libnsl-checksum = a3c8f674357674b7ed4b26c05adde607f39be8d6dc9ff715448e1fcc5fc23d11fbb4ce85a6e493b79bdb0bb450dc3ffb1fb480715779f738d7bc016fae91621d
+libpaper-checksum = 3bf6ebb0af89931d2f72ea4a09a7fa958b2facda5f238983ec7bac39652e08614b33f0de3af74a03457b2a4203eee4950bf18a4b726e79aa64093ace6a1fb0bc
libpng-checksum = 59e8c1059013497ae616a14c3abbe239322d3873c6ded0912403fc62fb260561768230b6ab997e2cccc3b868c09f539fd13635616b9fa0dd6279a3f63ec7e074
libtiff-checksum = d213e5db09fd56b8977b187c5a756f60d6e3e998be172550c2892dbdb4b2a8e8c750202bc863fe27d0d1c577ab9de1710d15e9f6ed665aadbfd857525a81eea8
-libtirpc-checksum = 392f391f9fc1bd68d81dc44e4058831a64b32790b5c8c37338b0ab416fad2ae4d16389e632596734dba09780347918cc65c6f134e0c1afd09e81ec250785ed23
+libtirpc-checksum = bcb6b5c062c1301aa1246ec93ae0a5c1d221b8421126d020863517cb814b43ed038fb6c0c2faf4e68ff133b69abefe4f4d42bfc870671da6c27ca941a30b155a
missfits-checksum = 32727f5eb30573a1cedacb8900e2536867e4815059eee32e64e3db65be9291b8a91b9f45b2c9f3cf6fc2a8cc448012ea3d502bdd9dee516008e17d5086aee795
netpbm-checksum = 064720f8a9d0a502488e1af4daecdbf3936910996507ca6f311073a0ad842346692a148eb1ddf7b717f7b108f60500246cb4b83f4d3665f5fc285a84ae1d63d6
-openblas-checksum = 91b3074eb922453bf843158b4281cde65db9e8bbdd7590e75e9e6cdcb486157f7973f2936f327bb3eb4f1702ce0ba51ae6729d8d4baf2d986c50771e8f696df0
+openblas-checksum = 64a5f983b2f6e02cdb6e0f14433498cc5daa1ccfb49246f7a2dcd38f9982fa608f2abea069fe0e35012af8c1441c43d1f6418eaccd40795f5002fed1c36ce05d
openmpi-checksum = 760716974cb6b25ad820184622e1ee7926bc6fda87db6b574f76792bc1ca99522e52195866c14b7cb2df5a4981efdaf9f71d2c5533cc0e8e45c2c4b3b74cbacc
openssh-checksum = e280fa2d56f550efd37c5d2477670326261aa8b94d991f9eb17aad90e0c6c9c939efa90fe87d33260d0f709485cb05c379f0fd1bd44fc0d5190298b6398c9982
patch-checksum = 75d4e1544484da12185418cd4a1571994398140a91ac606fa08dd067004187dad77d1413f0eb3319b3fe4df076714615c98b29df06af052bb65960fa8b0c86bf
+pcre-checksum = abac4c4f9df9e61d7d7761a9c50843882611752e1df0842a54318f358c28f5953025eba2d78997d21ee690756b56cc9f1c04a5ed591dd60654cc78ba16d9ecfb
pixman-checksum = 1b0205dbe9d9185c68813ce577a889f3c83e83fbd9955c3a72d411c3b476e6be93fc246b5b6ef4ee17e2bb8eb6fb5559e01dff7feb6a6c4c6314f980e960d690
python-checksum = c25a72ad792f7c1b4c2f79faebbe9608d04b04b2fe58ab804cb4732cdaa75ea93d175f5e52b38e91cb6ae0559ea6b645d802c8b6a869584e8bb9b5018367ce3d
R-checksum = 17513e9f4dd27c61c11f7aa45227aeeeefb375bf5d4e193b471724f379a1b2da33e127cbe91aa175cbbbb048b892047e2f610280585c8159242a6c94790b07f9
diff --git a/reproduce/software/config/software_acknowledge_context.sh b/reproduce/software/config/software_acknowledge_context.sh
new file mode 100755
index 0000000..b0ede85
--- /dev/null
+++ b/reproduce/software/config/software_acknowledge_context.sh
@@ -0,0 +1,112 @@
+#!/usr/bin/env sh
+
+# Surrounding text for software acknowledgement and citation. The list of
+# names, versions and citations of the software are written by an automatic
+# script. However, through this file, users have the option to specify the
+# text surrounding those lists.
+#
+# We recommend to leave these values untouched at first, after building
+# your PDF, you can see how they surround the list of software you used in
+# your project to make a smoothly readable English text. Afterwards, please
+# feel free to modify them as you wish.
+#
+# Copyright (C) 2020 Boud Roukema <boud@cosmo.torun.pl>
+# Copyright (C) 2020 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# This script is free software: you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation, either version 3 of the License, or (at your
+# option) any later version.
+#
+# This script is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
+# Public License for more details.
+#
+# A copy of the GNU General Public License is available at
+# <http://www.gnu.org/licenses/>.
+
+# WARNING:
+# In contrast to most configure files in maneage, this configure file is
+# technically a shell script, to be called by 'configure.sh', so the
+# variables defined here must follow 'shell' syntax, not 'make' syntax.
+
+# These variables will be exported to the 'configure.sh' script - so
+# descriptive, unique names should be used, to reduce the chance of
+# conflicts between identically named variables.
+
+# COMMENT:
+# Sentences have a tendancy to become very long. To avoid making the
+# variable values too long (and thus making this file hard to read), one
+# method is to break the sentence into smaller components and build the
+# full sentence gradually, similar to what we have done with 'str' in the
+# examples below. Each time, the value of 'str' is re-written by appending
+# its previous value with the rest of the sentence.
+
+# COMMENT:
+# As of 2020-06-10, the general issue of how to best cite software within
+# maneage, especially a full list of software in the Acknowledgments
+# section, remains wide open. See
+# https://savannah.nongnu.org/task/index.php?15318 for some technical
+# aspects of software citation.
+
+
+
+
+
+# Add your definitions of the LaTeX text here.
+#
+# To override a default but generate no text, use a string of non-zero
+# length such as "{}" that will have only minor effects in LaTeX.
+
+# An introduction to the software acknowledgement.
+thank_software_introduce=
+
+# The text to be used before listing C/C++ programs and libraries.
+thank_progs_libs=
+
+# The text to be used before listing Python modules.
+thank_python=
+
+# The text to be used before listing LaTeX packages.
+thank_latex=
+
+# Concluding remarks.
+thank_software_conclude=
+
+
+
+
+
+# Defaults
+# --------
+#
+# These are the default values which are only written into the variable if
+# you don't specify a value above
+if [ "x$thank_software_introduce" = "x" ]; then
+ thank_software_introduce=""
+fi
+
+if [ "x$thank_progs_libs" = "x" ]; then
+ str="This research was done with the following free software"
+ str="$str programs and libraries:"
+ thank_progs_libs="$str"
+fi
+
+if [ "x$thank_python" = "x" ]; then
+ thank_python="Within Python, the following modules were used:"
+fi
+
+if [ "x$thank_latex" = "x" ]; then
+ str="The \LaTeX{} source of the paper was compiled to make the"
+ str="$str PDF using the following packages:"
+ thank_latex="$str"
+fi
+
+if [ "x${thank_software_conclude}" = "x" ]; then
+ str="We are very grateful to all their creators for freely "
+ str="$str providing this necessary infrastructure. This research "
+ str="$str (and many other projects) would not be possible without "
+ str="$str them."
+ thank_software_conclude="$str"
+fi
diff --git a/reproduce/software/config/urls.conf b/reproduce/software/config/urls.conf
new file mode 100644
index 0000000..dc5a9d8
--- /dev/null
+++ b/reproduce/software/config/urls.conf
@@ -0,0 +1,159 @@
+# Optional URLs of software to use for downloading their source
+#
+# If un-commented the URLs of this file will be used. Otherwise default
+# servers (primarily on 'zenodo.org') will be checked for the tarball.
+#
+# Copyright (C) 2020 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+# Copyright (C) 2020 Raul Infante-Sainz <infantesainz@gmail.com>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice and
+# this notice are preserved. This file is offered as-is, without any
+# warranty.
+
+
+
+
+
+# Basic/low-level programs and libraires (installed in any case)
+# --------------------------------------------------------------
+#bash-url = http://akhlaghi.org/maneage-software
+#binutils-url = http://ftp.gnu.org/gnu/binutils
+#bzip2-url = http://akhlaghi.org/maneage-software
+#cert-url = http://akhlaghi.org/maneage-software
+#coreutils-url = http://ftp.gnu.org/gnu/coreutils
+#curl-url = https://curl.haxx.se/download
+#dash-url = http://akhlaghi.org/maneage-software
+#diffutils-url = http://ftp.gnu.org/gnu/diffutils
+#file-url = ftp://ftp.astron.com/pub/file
+#findutils-url = http://ftp.gnu.org/gnu/findutils
+#flock-url = http://akhlaghi.org/src
+#gawk-url = http://ftp.gnu.org/gnu/gawk
+#gcc-url = http://ftp.gnu.org/gnu/gcc/gcc-$(gcc-version)
+#gettext-url = https://ftp.gnu.org/gnu/gettext
+#git-url = http://mirrors.edge.kernel.org/pub/software/scm/git
+#gmp-url = https://gmplib.org/download/gmp
+#grep-url = http://ftp.gnu.org/gnu/grep
+#gzip-url = http://akhlaghi.org/src
+#isl-url = ftp://gcc.gnu.org/pub/gcc/infrastructure
+#libbsd-url = http://libbsd.freedesktop.org/releases
+#libiconv-url = https://ftp.gnu.org/pub/gnu/libiconv
+#libtool-url = http://ftp.gnu.org/gnu/libtool
+#libunistring-url = http://ftp.gnu.org/gnu/libunistring
+#libxml2-url = ftp://xmlsoft.org/libxml2
+#lzip-url = http://akhlaghi.org/src
+#m4-url = http://akhlaghi.org/maneage-software
+#make-url = http://akhlaghi.org/src
+#metastore-url = http://akhlaghi.org/maneage-software
+#mpc-url = http://ftp.gnu.org/gnu/mpc
+#mpfr-url = http://www.mpfr.org/mpfr-current
+#ncurses-url = http://ftp.gnu.org/gnu/ncurses
+#openssl-url = http://www.openssl.org/source
+#patchelf-url = http://nixos.org/releases/patchelf/patchelf-$(patchelf-version)
+#perl-url = $(shell echo https://www.cpan.org/src/$$(echo $(perl-version) | sed -e's/\./ /g' | awk '{printf("%d.0", $$1)}'))
+#pkgconfig-url = http://pkg-config.freedesktop.org/releases
+#readline-url = http://ftp.gnu.org/gnu/readline
+#sed-url = http://ftp.gnu.org/gnu/sed
+#tar-url = http://ftp.gnu.org/gnu/tar
+#texinfo-url = http://ftp.gnu.org/gnu/texinfo
+#unzip-url = $(shell echo ftp://ftp.info-zip.org/pub/infozip/src/unzip$$(echo $(unzip-version) | sed -e's/\.//').tgz)
+#wget-url = http://ftp.gnu.org/gnu/wget
+#which-url = http://ftp.gnu.org/gnu/which
+#xz-url = http://tukaani.org/xz
+#zip-url = $(shell echo ftp://ftp.info-zip.org/pub/infozip/src/zip$$(echo $(zip-version) | sed -e's/\.//').tgz)
+#zlib-url = http://www.zlib.net
+
+
+
+
+
+# Optional/high-level programs and libraries
+# ------------------------------------------
+#
+# These are programs and libraries that are optional, The ones in
+# `reproduce/software/config/TARGETS.conf' will be built as
+# part of a project. To specify a software there, just remove the
+# `-url' suffix from the list below.
+#apachelog4cxx-url = http://akhlaghi.org/maneage-software
+#apr-url = https://www-us.apache.org/dist/apr
+#apr-util-url = https://www-us.apache.org/dist/apr
+#astrometrynet-url = http://astrometry.net/downloads
+#atlas-url = https://sourceforge.net/projects/math-atlas/files/Stable/$(atlas-version)/atlas$(atlas-version).tar.bz2/download
+#autoconf-url = http://akhlaghi.org/maneage-software
+#automake-url = http://ftp.gnu.org/gnu/automake
+#bison-url = http://ftp.gnu.org/gnu/bison
+#boost-url = $(shell vstr=$$(echo $(boost-version) | sed -e's/\./_/g'); echo https://dl.bintray.com/boostorg/release/$(boost-version)/source)
+#cairo-url = https://www.cairographics.org/releases
+#cdsclient-url = http://cdsarc.u-strasbg.fr/ftp/pub/sw
+#cfitsio-url = https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c
+#cmake-url = $(shell majv=$$(echo $(cmake-version) | sed -e's/\./ /' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://cmake.org/files/v$$majv/cmake-$(cmake-version).tar.gz)
+#eigen-url = http://bitbucket.org/eigen/eigen/get/$(eigen-version).tar.gz
+#expat-url = $(shell vstr=$$(echo $(expat-version) | sed -e's/\./_/g'); echo https://github.com/libexpat/libexpat/releases/download/R_$$vstr/expat-$(expat-version).tar.lz)
+#fftw-url = ftp://ftp.fftw.org/pub/fftw
+#flex-url = https://github.com/westes/flex/files/981163
+#freetype-url = https://download.savannah.gnu.org/releases/freetype
+#gdb-url = http://ftp.gnu.org/gnu/gdb
+#ghostscript-url = $(shell v=$$(echo $(ghostscript-version) | sed -e's/\.//'); echo https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs$$v)
+#gnuastro-url = http://ftp.gnu.org/gnu/gnuastro
+#gsl-url = http://ftp.gnu.org/gnu/gsl
+#hdf5-url = $(shell majorver=$$(echo $(hdf5-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$$majorver/hdf5-$(hdf5-version)/src)
+#healpix-url = http://akhlaghi.org/maneage-software
+#help2man-url = http://ftp.gnu.org/gnu/help2man
+#imagemagick-url = http://akhlaghi.org/maneage-software
+#imfit-url = http://www.mpe.mpg.de/~erwin/resources/imfit
+#lapack-url = http://www.netlib.org/lapack
+#libffi-url = ftp://sourceware.org/pub/libffi
+#libgit2-url = https://github.com/libgit2/libgit2/archive
+#libjpeg-url = http://ijg.org/files
+#libnsl-url = http://akhlaghi.org/maneage-software
+#ibpaper-url=http://ftp.debian.org/debian/pool/main/libp/libpaper/
+#libpng-url = https://download.sourceforge.net/libpng
+#libtiff-url = https://download.osgeo.org/libtiff
+#libtirpc-url = https://downloads.sourceforge.net/libtirpc
+#minizip-url =
+#missfits-url = https://www.astromatic.net/download/missfits
+#netpbm-url = http://akhlaghi.org/maneage-software
+#openblas-url = https://github.com/xianyi/OpenBLAS/archive
+#openmpi-url = $(shell majorver=$$(echo $(openmpi-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://download.open-mpi.org/release/open-mpi/v$$majorver)
+#openssh-url = https://artfiles.org/openbsd/OpenSSH/portable
+#patch-url = http://ftp.gnu.org/gnu/patch
+#pixman-url = https://www.cairographics.org/releases
+#python-url = https://www.python.org/ftp/python/$(python-version)
+#R-url = $(shell majver=$$(echo $(R-version) | sed -e's/\./ /g' | awk '{print $$1}'); echo https://cran.r-project.org/src/base/R-$$majver)
+#rpcsvc-proto-url = https://github.com/thkukuk/rpcsvc-proto/releases/download
+#scamp-url = http://akhlaghi.org/maneage-software
+#scons-url = https://sourceforge.net/projects/scons/files/scons/$(scons-version)/scons-$(scons-version).tar.gz/download
+#sextractor-url = http://akhlaghi.org/maneage-software
+#swarp-url = https://www.astromatic.net/download/swarp
+#swig-url = https://sourceforge.net/projects/swig/files/swig/swig-$(swig-version)
+#tides-url = http://akhlaghi.org/maneage-software
+#valgrind-url = https://sourceware.org/pub/valgrind
+#wcslib-url = ftp://ftp.atnf.csiro.au/pub/software/wcslib
+#xlsxio-url = https://github.com/brechtsanders/xlsxio/archive
+#yaml-url = pyyaml.org/download/libyaml
+
+
+
+
+
+# Python packages
+# ---------------
+#
+# Similar to optional programs and libraries above.
+#
+# IMPORTANT: Python packages are usually distributed on servers like
+# 'https://pypi.org'. You can search for your package here and add the link
+# to the tarball here for your desired software. The links in PyPi don't
+# contain the names of the software, but only have hashes. So we aren't
+# including them by default here. But adding them is trivial for a certain
+# version. For example if you search "Numpy" and click on the "Download
+# files" menu, you can download the source '.zip' file. For version 1.18.5,
+# (with full filename of 'numpy-1.18.5.zip') the link will be like this.
+#
+# numpy-url = https://files.pythonhosted.org/packages/01/1b/d3ddcabd5817be02df0e6ee20d64f77ff6d0d97f83b77f65e98c8a651981/numpy-1.18.5.zip
+#
+# Hence, if the version changes, the checksum, and its two top host
+# directories also change. This is why we aren't putting any URL here by
+# default, if you need to add one, simply follow the numpy example above.
+# But be sure to send us a link to the tarball so we upload it to Maneage's
+# backup servers.
diff --git a/reproduce/software/config/versions.conf b/reproduce/software/config/versions.conf
index 1a4172a..b395e0f 100644
--- a/reproduce/software/config/versions.conf
+++ b/reproduce/software/config/versions.conf
@@ -14,6 +14,8 @@
# Basic/low-level programs and libraires (installed in any case)
# --------------------------------------------------------------
+#
+# CLASS:BASIC (important identifier, don't modify this line)
bash-version = 5.0.11
binutils-version = 2.32
coreutils-version = 8.31
@@ -22,6 +24,7 @@ dash-version = 0.5.10.2
diffutils-version = 3.7
file-version = 5.36
findutils-version = 4.7.0
+flock-version = 0.2.3
gawk-version = 5.0.1
gcc-version = 9.2.0
gettext-version = 0.20.2
@@ -35,8 +38,8 @@ libiconv-version = 1.16
libtool-version = 2.4.6
libunistring-version = 0.9.10
libxml2-version = 2.9.9
-lzip-version = 1.20
-m4-version = 1.4.18
+lzip-version = 1.22-rc2
+m4-version = 1.4.18-patched
make-version = 4.3
metastore-version = 1.1.2-23-fa9170b
mpc-version = 1.1.0
@@ -56,6 +59,14 @@ xz-version = 5.2.4
zip-version = 3.0
zlib-version = 1.2.11
+# Version-dependent build
+# -----------------------
+#
+# When updating the version of these programs/libraries, please look into
+# the build rule first: In one way or another, the version string becomes
+# necessary during their build and must be accounted for.
+bzip2-version = 1.0.6
+
@@ -67,6 +78,8 @@ zlib-version = 1.2.11
# `reproduce/software/config/TARGETS.conf' will be built as
# part of a project. To specify a software there, just remove the
# `-version' suffix from the list below.
+#
+# CLASS:HIGHLEVEL (important identifier, don't modify this line.)
apachelog4cxx-version = 0.10.0-603-014954db
apr-version = 1.7.0
apr-util-version = 1.6.1
@@ -75,7 +88,7 @@ atlas-version = 3.10.3
autoconf-version = 2.69.200-babc
automake-version = 1.16.1
bison-version = 3.4.2
-boost-version = 1.71.0
+boost-version = 1.73.0
cairo-version = 1.16.0
cdsclient-version = 3.84
cfitsio-version = 3.47
@@ -83,8 +96,7 @@ cmake-version = 3.17.0
eigen-version = 3.3.7
expat-version = 2.2.9
fftw-version = 3.3.8
-flex-version = 2.6.4
-flock-version = 0.2.3
+flex-version = 2.6.4-91-ga631f5d
freetype-version = 2.9
gdb-version = 8.3
ghostscript-version = 9.50
@@ -98,14 +110,16 @@ imfit-version = 1.6.1
libffi-version = 3.2.1
libjpeg-version = v9b
libnsl-version = 1.2.0-4a062cf
+libpaper-version = 1.1.28
libpng-version = 1.6.37
libtiff-version = 4.0.10
-libtirpc-version = 1.1.4
+libtirpc-version = 1.2.6
missfits-version = 2.8.0
-openblas-version = 0.3.5
+openblas-version = 0.3.10
openmpi-version = 4.0.1
openssh-version = 8.0p1
patch-version = 2.7.6
+pcre-version = 8.44
pixman-version = 0.38.0
python-version = 3.7.4
R-version = 3.6.2
@@ -119,6 +133,29 @@ tides-version = 2.0
xlsxio-version = 0.2.21
yaml-version = 0.2.2
+# Version-dependent build
+# -----------------------
+lapack-version = 3.8.0
+libgit2-version = 0.28.2
+wcslib-version = 6.4
+
+# Netpbm's questions in the configure steps maybe change with different or
+# new versions.
+netpbm-version = 10.86.99
+
+# Minizip is installed with the same `zlib' tarball, and they have the same
+# version.
+minizip-version = $(zlib-version)
+
+# From version 1.2 OpenSSL may not need a manual addition, as described in
+# its comments and `https://savannah.nongnu.org/bugs/?58263'. If it doesn't
+# cause problems, put it back in the list of "Basic/low-level" tools.
+openssl-version = 1.1.1a
+
+# Version 3.15.0 needs two patches, please check if they are necessary on
+# any future release.
+valgrind-version = 3.15.0
+
@@ -131,6 +168,8 @@ yaml-version = 0.2.2
# IMPORTANT: If you intend to change the version of any of the Python
# modules/libraries below, please fix the hash strings of the respective
# URL in `reproduce/software/make/python.mk'.
+#
+# CLASS:PYTHON (important identifier, don't modify this line.)
asn1crypto-version = 0.24.0
asteval-version = 0.9.16
astropy-version = 4.0
@@ -151,7 +190,6 @@ flake8-version = 3.7.8
future-version = 0.18.1
galsim-version = 2.2.1
h5py-version = 2.9.0
-healpy-version = installed-with-healpix
html5lib-version = 1.0.1
idna-version = 2.8
jeepney-version = 0.4
@@ -184,42 +222,9 @@ soupsieve-version = 1.8
sympy-version = 1.4
uncertainties-version = 3.1.2
urllib3-version = 1.24.1
-virtualenv-version = 16.4.0
webencodings-version = 0.5.1
-
-
-
-
-# Special programs and libraries
-# ------------------------------
-#
-# When updating the version of these libraries, please look into the build
-# rule first: In one way or another, the version string becomes necessary
-# during their build and must be accounted for.
+# Special Python modules:
#
-# Special notes:
-# - `netpbm' questions in the configure steps maybe change with different
-# or new versions.
-
-# Basic/low-level
-bzip2-version = 1.0.6
-
-# Optional/high-level
-lapack-version = 3.8.0
-libgit2-version = 0.28.2
-netpbm-version = 10.86.99
-wcslib-version = 6.4
-
-# Minizip is installed with the same `zlib' tarball, and they have the same
-# version.
-minizip-version = $(zlib-version)
-
-# From version 1.2 OpenSSL may not need a manual addition, as described in
-# its comments and `https://savannah.nongnu.org/bugs/?58263'. If it doesn't
-# cause problems, put it back in the list of "Basic/low-level" tools.
-openssl-version = 1.1.1a
-
-# Version 3.15.0 needs two patches, please check if they are necessary on
-# any future release.
-valgrind-version = 3.15.0
+# Healpy: When any Python module is requested, healpix will also build its
+# Python module Healpy.
diff --git a/reproduce/software/make/atlas-multiple.mk b/reproduce/software/make/atlas-multiple.mk
index 9bd26b1..9bd26b1 100755..100644
--- a/reproduce/software/make/atlas-multiple.mk
+++ b/reproduce/software/make/atlas-multiple.mk
diff --git a/reproduce/software/make/atlas-single.mk b/reproduce/software/make/atlas-single.mk
index 29373e0..29373e0 100755..100644
--- a/reproduce/software/make/atlas-single.mk
+++ b/reproduce/software/make/atlas-single.mk
diff --git a/reproduce/software/make/basic.mk b/reproduce/software/make/basic.mk
index 82bc42d..94bb5d4 100644
--- a/reproduce/software/make/basic.mk
+++ b/reproduce/software/make/basic.mk
@@ -5,13 +5,19 @@
# !!!!! IMPORTANT NOTES !!!!!
#
# This Makefile will be run by the initial `./project configure' script. It
-# is not included into the project after that.
+# is not included into the project afterwards.
#
-# This Makefile builds very low-level and basic tools like GNU Tar, GNU
-# Bash, GNU Make, GCC and etc. Therefore this is the only Makefile in the
-# project where you CANNOT assume that GNU Bash or GNU Make are used. After
-# this Makefile (where GNU Bash and GNU Make are built), other Makefiles
-# can safely assume the fixed version of all these software.
+# This Makefile builds low-level and basic tools that are necessary in any
+# project like like GNU Tar, GNU Bash, GNU Make, GCC and etc. But before
+# control reaches here, the 'configure.sh' script has already built the
+# extremely low-level tools: Lzip (a compressing program), GNU Make (to be
+# able to run this Makefile with a fixed version), Dash (a minimalist
+# POSIX-compatible shell) and Flock (to allow locking files, and
+# serializing when necessary: downloading during the software building
+# phase). Thanks to GNU Make and Dash, we can assume a fixed structure in
+# this Makefile. However, the 'PATH's in this Makefile still include the
+# host's paths because we will be using the hosts tools (gradually
+# decreasing) to build our own tools.
#
# ------------------------------------------------------------------------
#
@@ -31,13 +37,17 @@
# You should have received a copy of the GNU General Public License
# along with this Makefile. If not, see <http://www.gnu.org/licenses/>.
-
# Top level environment
include reproduce/software/config/LOCAL.conf
include reproduce/software/make/build-rules.mk
include reproduce/software/config/versions.conf
include reproduce/software/config/checksums.conf
+# The optional URLs of software. Note that these may need the software
+# version, so it is important that they be loaded after 'versions.conf'.
+include reproduce/software/config/urls.conf
+
+# Basic directories
lockdir = $(BDIR)/locks
tdir = $(BDIR)/software/tarballs
ddir = $(BDIR)/software/build-tmp
@@ -46,31 +56,34 @@ ibdir = $(BDIR)/software/installed/bin
ildir = $(BDIR)/software/installed/lib
ibidir = $(BDIR)/software/installed/version-info/proglib
-# We'll need the system's PATH for making links to low-level programs we
-# won't be building ourselves.
-syspath := $(PATH)
+# Ultimate Makefile target.
+targets-proglib = low-level-links gcc-$(gcc-version)
+all: $(foreach p, $(targets-proglib), $(ibidir)/$(p))
+# Define the shell environment
+# ----------------------------
+#
+# We build GNU Bash here in 'basic.mk'. So here we must must assume DASH
+# shell that was built before calling this Makefile:
+# http://gondor.apana.org.au/~herbert/dash. DASH is a minimalist POSIX
+# shell, so it doesn't have startup options like '--noprofile --norc'. But
+# from its manual, to load startup files, Dash actually requires that it be
+# called with a '-' before it (for example '-dash'), so it shouldn't be
+# loading any startup files if it was interpretted properly.
+#
# As we build more programs, we want to use this project's built programs
-# and libraries, not the host's.
+# and libraries, not the host's, so in all PATH-related environments, our
+# own build-directory comes first.
.ONESHELL:
+.SHELLFLAGS := -e -c
export CCACHE_DISABLE := 1
+export SHELL := $(ibdir)/dash
export PATH := $(ibdir):$(PATH)
export PKG_CONFIG_PATH := $(ildir)/pkgconfig
export PKG_CONFIG_LIBDIR := $(ildir)/pkgconfig
export CPPFLAGS := -I$(idir)/include $(CPPFLAGS)
export LDFLAGS := $(rpath_command) -L$(ildir) $(LDFLAGS)
-# Note that we build GNU Bash here in 'basic.mk'. So we can't assume Bash
-# in this Makefile and use the DASH shell that was before calling this
-# Makefile: http://gondor.apana.org.au/~herbert/dash. Dash is a minimalist
-# POSIX shell, so it doesn't have startup options like '--noprofile
-# --norc'. But from its manual, to load startup files, Dash actually
-# requires that it be called with a '-' before it (for example '-dash'), so
-# it shouldn't be loading any startup files if it was interpretted
-# properly.
-.SHELLFLAGS := -e -c
-export SHELL := $(ibdir)/dash
-
# This is the "basic" tools where we are relying on the host operating
# system, but are slowly populating our basic software envirnoment. To run
# (system or template) programs, `LD_LIBRARY_PATH' is necessary, so here,
@@ -86,202 +99,29 @@ export LD_LIBRARY_PATH := $(shell echo $(LD_LIBRARY_PATH):$(ildir) \
# causes crashs (see bug #56682). So we'll just give it no value at all.
export DYLD_LIBRARY_PATH :=
-# Recipe startup script.
-export PROJECT_STATUS := configure_basic
-export BASH_ENV := $(shell pwd)/reproduce/software/shell/bashrc.sh
-
-# Define the top-level basic programs (that don't depend on any other).
-top-level-programs = low-level-links gcc
-all: $(foreach p, $(top-level-programs), $(ibidir)/$(p))
-
-# Servers to use as backup, later this should go in a file that is not
-# under version control (the actual server that the tarbal comes from is
-# irrelevant).
-backupservers := $(shell awk '!/^#/{printf "%s ", $$1}' \
- reproduce/software/config/servers-backup.conf)
-
-
-
-
-
-
-# Tarballs
-# --------
-#
-# Prepare tarballs. Difference with that in `high-level.mk': `.ONESHELL' is
-# not recognized by some versions of Make (even older GNU Makes). So we'll
-# have to make sure the recipe doesn't break into multiple shell calls (so
-# we can preserve the variables).
-#
-# Software with main webpage at our backup repository
-# (http://akhlaghi.org/maneage-software): As of our latest check their
-# major release tarballs either crash or don't build on some systems (for
-# example Make or Gzip), or they don't exist (for example Bzip2). So we are
-# building them from their Git history (which builds properly) or host them
-# directly.
+# Servers to use as backup. Maneage already has some fixed servers that can
+# be used to download software tarballs. They are in a configuation
+# file. But we give precedence to the "user" backup servers.
#
-# In the first case, we used their Git repo and bootstrapped them (just
-# like Gnuastro) and built the most recent tarball off of that. In the case
-# of Bzip2: its webpage has expired and doesn't host the data any more. It
-# is available on the link below (archive.org):
+# One important "user" server (which the user doesn't actually give, but is
+# found at configuration time in 'configure.sh') is Zenodo (see the
+# description in 'configure.sh' for more on why this depends on
+# configuration time).
#
-# https://web.archive.org/web/20180624184806/http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz
-#
-# However, downloading from this link is slow (because its just a link). So
-# its easier to just keep a with the others.
-$(lockdir): | $(BDIR); mkdir $@
+# Afer putting everything together, we use the first server as the
+# reference for all software if their '-url' variable isn't defined (in
+# 'reproduce/software/config/urls.conf').
downloadwrapper = ./reproduce/analysis/bash/download-multi-try
-tarballs = $(foreach t, bash-$(bash-version).tar.lz \
- binutils-$(binutils-version).tar.lz \
- bzip2-$(bzip2-version).tar.gz \
- cert.pem \
- coreutils-$(coreutils-version).tar.xz \
- curl-$(curl-version).tar.gz \
- diffutils-$(diffutils-version).tar.xz \
- file-$(file-version).tar.gz \
- findutils-$(findutils-version).tar.xz \
- gawk-$(gawk-version).tar.lz \
- gcc-$(gcc-version).tar.xz \
- gettext-$(gettext-version).tar.xz \
- git-$(git-version).tar.xz \
- gmp-$(gmp-version).tar.lz \
- grep-$(grep-version).tar.xz \
- gzip-$(gzip-version).tar.lz \
- isl-$(isl-version).tar.bz2 \
- libbsd-$(libbsd-version).tar.xz \
- libiconv-$(libiconv-version).tar.gz \
- libtool-$(libtool-version).tar.xz \
- libunistring-$(libunistring-version).tar.xz \
- libxml2-$(libxml2-version).tar.gz \
- m4-$(m4-version).tar.gz \
- metastore-$(metastore-version).tar.gz \
- mpfr-$(mpfr-version).tar.xz \
- mpc-$(mpc-version).tar.gz \
- ncurses-$(ncurses-version).tar.gz \
- openssl-$(openssl-version).tar.gz \
- patchelf-$(patchelf-version).tar.gz \
- perl-$(perl-version).tar.gz \
- pkg-config-$(pkgconfig-version).tar.gz \
- readline-$(readline-version).tar.gz \
- sed-$(sed-version).tar.xz \
- tar-$(tar-version).tar.gz \
- texinfo-$(texinfo-version).tar.xz \
- unzip-$(unzip-version).tar.gz \
- wget-$(wget-version).tar.lz \
- which-$(which-version).tar.gz \
- xz-$(xz-version).tar.gz \
- zip-$(zip-version).tar.gz \
- zlib-$(zlib-version).tar.gz \
- , $(tdir)/$(t) )
-$(tarballs): $(tdir)/%: | $(lockdir)
-
- # Remove the version numbers and suffix from the tarball name so we
- # can search more easily only with the program name. This requires
- # the first character of the version to be a digit: packages such
- # as `foo' and `foo-3' will not be distinguished, but `foo' and
- # `foo2' will be distinguished.
- @n=$$(echo $* | sed -e's/-[0-9]/ /' -e's/\./ /g' \
- | awk '{print $$1}' )
-
- mergenames=1; \
- if [ $$n = bash ]; then c=$(bash-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = binutils ]; then c=$(binutils-checksum); w=http://ftp.gnu.org/gnu/binutils
- elif [ $$n = bzip2 ]; then c=$(bzip2-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = cert ]; then c=$(cert-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = coreutils ]; then c=$(coreutils-checksum); w=http://ftp.gnu.org/gnu/coreutils
- elif [ $$n = curl ]; then c=$(curl-checksum); w=https://curl.haxx.se/download
- elif [ $$n = diffutils ]; then c=$(diffutils-checksum); w=http://ftp.gnu.org/gnu/diffutils
- elif [ $$n = file ]; then c=$(file-checksum); w=ftp://ftp.astron.com/pub/file
- elif [ $$n = findutils ]; then c=$(findutils-checksum); w=http://ftp.gnu.org/gnu/findutils
- elif [ $$n = gawk ]; then c=$(gawk-checksum); w=http://ftp.gnu.org/gnu/gawk
- elif [ $$n = gcc ]; then c=$(gcc-checksum); w=http://ftp.gnu.org/gnu/gcc/gcc-$(gcc-version)
- elif [ $$n = gettext ]; then c=$(gettext-checksum); w=https://ftp.gnu.org/gnu/gettext
- elif [ $$n = git ]; then c=$(git-checksum); w=http://mirrors.edge.kernel.org/pub/software/scm/git
- elif [ $$n = gmp ]; then c=$(gmp-checksum); w=https://gmplib.org/download/gmp
- elif [ $$n = grep ]; then c=$(grep-checksum); w=http://ftp.gnu.org/gnu/grep
- elif [ $$n = gzip ]; then c=$(gzip-checksum); w=http://akhlaghi.org/src
- elif [ $$n = isl ]; then c=$(isl-checksum); w=ftp://gcc.gnu.org/pub/gcc/infrastructure
- elif [ $$n = libbsd ]; then c=$(libbsd-checksum); w=http://libbsd.freedesktop.org/releases
- elif [ $$n = libiconv ]; then c=$(libiconv-checksum); w=https://ftp.gnu.org/pub/gnu/libiconv
- elif [ $$n = libtool ]; then c=$(libtool-checksum); w=http://ftp.gnu.org/gnu/libtool
- elif [ $$n = libunistring ]; then c=$(libunistring-checksum); w=http://ftp.gnu.org/gnu/libunistring
- elif [ $$n = libxml2 ]; then c=$(libxml2-checksum); w=ftp://xmlsoft.org/libxml2
- elif [ $$n = m4 ]; then
- mergenames=0
- c=$(m4-checksum)
- w=http://akhlaghi.org/maneage-software/m4-1.4.18-patched.tar.gz
- elif [ $$n = metastore ]; then c=$(metastore-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = mpc ]; then c=$(mpc-checksum); w=http://ftp.gnu.org/gnu/mpc
- elif [ $$n = mpfr ]; then c=$(mpfr-checksum); w=http://www.mpfr.org/mpfr-current
- elif [ $$n = ncurses ]; then c=$(ncurses-checksum); w=http://ftp.gnu.org/gnu/ncurses
- elif [ $$n = openssl ]; then c=$(openssl-checksum); w=http://www.openssl.org/source
- elif [ $$n = patchelf ]; then c=$(patchelf-checksum); w=http://nixos.org/releases/patchelf/patchelf-$(patchelf-version)
- elif [ $$n = perl ]; then
- c=$(perl-checksum)
- v=$$(echo $(perl-version) | sed -e's/\./ /g' | awk '{printf("%d.0", $$1)}')
- w=https://www.cpan.org/src/$$v
- elif [ $$n = pkg-config ]; then c=$(pkgconfig-checksum); w=http://pkg-config.freedesktop.org/releases
- elif [ $$n = readline ]; then c=$(readline-checksum); w=http://ftp.gnu.org/gnu/readline
- elif [ $$n = sed ]; then c=$(sed-checksum); w=http://ftp.gnu.org/gnu/sed
- elif [ $$n = tar ]; then c=$(tar-checksum); w=http://ftp.gnu.org/gnu/tar
- elif [ $$n = texinfo ]; then c=$(texinfo-checksum); w=http://ftp.gnu.org/gnu/texinfo
- elif [ $$n = unzip ]; then
- c=$(unzip-checksum)
- mergenames=0; v=$$(echo $(unzip-version) | sed -e's/\.//')
- w=ftp://ftp.info-zip.org/pub/infozip/src/unzip$$v.tgz
- elif [ $$n = wget ]; then c=$(wget-checksum); w=http://ftp.gnu.org/gnu/wget
- elif [ $$n = which ]; then c=$(which-checksum); w=http://ftp.gnu.org/gnu/which
- elif [ $$n = xz ]; then c=$(xz-checksum); w=http://tukaani.org/xz
- elif [ $$n = zip ]; then
- c=$(zip-checksum)
- mergenames=0; v=$$(echo $(zip-version) | sed -e's/\.//')
- w=ftp://ftp.info-zip.org/pub/infozip/src/zip$$v.tgz
- elif [ $$n = zlib ]; then c=$(zlib-checksum); w=http://www.zlib.net
- else
- echo; echo; echo
- echo "'$$n' not recognized as a software tarball name to download."
- echo; echo; echo
- exit 1
- fi
+maneage_backup_urls := $(shell awk '!/^#/{printf "%s ", $$1}' \
+ reproduce/software/config/servers-backup.conf)
+backupservers_all = $(user_backup_urls) $(maneage_backup_urls)
+topbackupserver = $(word 1, $(backupservers_all))
+backupservers = $(filter-out $(topbackupserver),$(backupservers_all))
+
- # Download the raw tarball, using an '.unchecked' suffix to specify
- # that it is not yet fully checked and usable. But first, since the
- # download may be interrupted in a previous build and an incomplete
- # '.unchecked' file may remain, we'll remove any possibly existing
- # uncheked file.
- rm -f "$@.unchecked"
- if [ -f $(DEPENDENCIES-DIR)/$* ]; then
- cp $(DEPENDENCIES-DIR)/$* "$@.unchecked"
- else
- if [ $$mergenames = 1 ]; then tarballurl=$$w/"$*"
- else tarballurl=$$w
- fi
- echo "Downloading $$tarballurl"
- if [ -f $(ibdir)/wget ]; then
- downloader="wget --no-use-server-timestamps -O"
- else
- downloader="$(DOWNLOADER)"
- fi
- touch $(lockdir)/download
- $(downloadwrapper) "$$downloader" $(lockdir)/download \
- $$tarballurl "$@.unchecked" "$(backupservers)"
- fi
- # Make sure the file's Checksum is correct.
- if type sha512sum > /dev/null 2>/dev/null; then
- checksum=$$(sha512sum "$@.unchecked" | awk '{print $$1}')
- if [ x"$$checksum" = x"$$c" ]; then
- mv "$@.unchecked" "$@"
- else
- echo "ERROR: Non-matching checksum for '$*'."
- echo "Checksum should be: $$c"
- echo "Checksum is: $$checksum"
- exit 1
- fi
- else mv "$@.unchecked" "$@"
- fi
@@ -301,6 +141,10 @@ $(tarballs): $(tdir)/%: | $(lockdir)
# purpose here, it is very annoying and can cause many complications. We
# thus remove any part of PATH of that has `ccache' in it before making
# symbolic links to the programs we are not building ourselves.
+#
+# We'll need the system's PATH for making links to low-level programs we
+# won't be building ourselves.
+syspath := $(PATH)
makelink = origpath="$$PATH"; \
export PATH=$$(echo $(syspath) \
| tr : '\n' \
@@ -322,7 +166,8 @@ makelink = origpath="$$PATH"; \
export PATH="$$origpath"
$(ibdir) $(ildir):; mkdir $@
-$(ibidir)/low-level-links: $(ibidir)/coreutils | $(ibdir) $(ildir)
+$(ibidir)/low-level-links: $(ibidir)/coreutils-$(coreutils-version) \
+ | $(ibdir) $(ildir)
# Not-installed (but necessary in some cases) compilers.
# Clang is necessary for CMake.
@@ -331,6 +176,7 @@ $(ibidir)/low-level-links: $(ibidir)/coreutils | $(ibdir) $(ildir)
# Mac OS specific
$(call makelink,mig)
+ $(call makelink,xcrun)
$(call makelink,sysctl)
$(call makelink,sw_vers)
$(call makelink,dsymutil)
@@ -374,17 +220,25 @@ $(ibidir)/low-level-links: $(ibidir)/coreutils | $(ibdir) $(ildir)
# tarballs of the other compression programs. Once all the compression
# programs/libraries are complete, we build our own GNU Tar and continue
# with other software.
-$(ibidir)/gzip: $(tdir)/gzip-$(gzip-version).tar.lz
- $(call gbuild, gzip-$(gzip-version), static, , V=1) \
- && echo "GNU Gzip $(gzip-version)" > $@
+$(lockdir): | $(BDIR); mkdir $@
+$(ibidir)/gzip-$(gzip-version): | $(ibdir) $(ildir) $(lockdir)
+ tarball=gzip-$(gzip-version).tar.lz
+ $(call import-source, $(gzip-url), $(gzip-checksum))
+ $(call gbuild, gzip-$(gzip-version), static, , V=1)
+ echo "GNU Gzip $(gzip-version)" > $@
+
+$(ibidir)/xz-$(xz-version): $(ibidir)/gzip-$(gzip-version)
+ tarball=xz-$(xz-version).tar.gz
+ $(call import-source, $(xz-url), $(xz-checksum))
+ $(call gbuild, xz-$(xz-version), static)
+ echo "XZ Utils $(xz-version)" > $@
-$(ibidir)/xz: $(ibidir)/gzip \
- $(tdir)/xz-$(xz-version).tar.gz
- $(call gbuild, xz-$(xz-version), static) \
- && echo "XZ Utils $(xz-version)" > $@
+$(ibidir)/bzip2-$(bzip2-version): $(ibidir)/gzip-$(gzip-version)
+
+ # Download the tarball.
+ tarball=bzip2-$(bzip2-version).tar.gz
+ $(call import-source, $(bzip2-url), $(bzip2-checksum))
-$(ibidir)/bzip2: $(ibidir)/gzip \
- $(tdir)/bzip2-$(bzip2-version).tar.gz
# Bzip2 doesn't have a `./configure' script, and its Makefile
# doesn't build a shared library. So we can't use the `gbuild'
# function here and we need to take some extra steps (inspired
@@ -406,71 +260,77 @@ $(ibidir)/bzip2: $(ibidir)/gzip \
makeshared="make -f Makefile-libbz2_so"
fi
fi
- cd $(ddir) && rm -rf $$tdir \
- && tar xf $(word 1,$(filter $(tdir)/%,$^)) \
- && cd $$tdir \
- && sed -e 's@\(ln -s -f \)$$(PREFIX)/bin/@\1@' Makefile \
- > Makefile.sed \
- && mv Makefile.sed Makefile \
- && $$makeshared CC=cc \
- && cp -a libbz2* $(ildir)/ \
- && make clean \
- && $$makecommand CC=cc \
- && make install PREFIX=$(idir) \
- && cd .. \
- && rm -rf $$tdir \
- && cd $(ildir) \
- && ln -fs libbz2.so.1.0 libbz2.so \
- && echo "Bzip2 $(bzip2-version)" > $@
-
-$(ibidir)/unzip: $(ibidir)/gzip \
- $(tdir)/unzip-$(unzip-version).tar.gz
+ cd $(ddir)
+ rm -rf $$tdir
+ tar xf $(tdir)/$$tarball
+ cd $$tdir
+ sed -e 's@\(ln -s -f \)$$(PREFIX)/bin/@\1@' Makefile \
+ > Makefile.sed
+ mv Makefile.sed Makefile
+ $$makeshared CC=cc
+ cp -a libbz2* $(ildir)/
+ make clean
+ $$makecommand CC=cc
+ make install PREFIX=$(idir)
+ cd ..
+ rm -rf $$tdir
+ cd $(ildir)
+ ln -fs libbz2.so.1.0 libbz2.so
+ echo "Bzip2 $(bzip2-version)" > $@
+
+$(ibidir)/unzip-$(unzip-version): $(ibidir)/gzip-$(gzip-version)
+ tarball=unzip-$(unzip-version).tar.gz
v=$$(echo $(unzip-version) | sed -e's/\.//')
+ $(call import-source, $(unzip-url), $(unzip-checksum))
$(call gbuild, unzip$$v, static,, \
-f unix/Makefile generic \
CFLAGS="-DBIG_MEM -DMMAP",,pwd, \
-f unix/Makefile generic \
- BINDIR=$(ibdir) MANDIR=$(idir)/man/man1 ) \
- && echo "Unzip $(unzip-version)" > $@
+ BINDIR=$(ibdir) MANDIR=$(idir)/man/man1 )
+ echo "Unzip $(unzip-version)" > $@
-$(ibidir)/zip: $(ibidir)/gzip \
- $(tdir)/zip-$(zip-version).tar.gz
+$(ibidir)/zip-$(zip-version): $(ibidir)/gzip-$(gzip-version)
+ tarball=zip-$(zip-version).tar.gz
v=$$(echo $(zip-version) | sed -e's/\.//')
+ $(call import-source, $(zip-url), $(zip-checksum))
$(call gbuild, zip$$v, static,, \
-f unix/Makefile generic \
CFLAGS="-DBIG_MEM -DMMAP",,pwd, \
-f unix/Makefile generic \
- BINDIR=$(ibdir) MANDIR=$(idir)/man/man1 ) \
- && echo "Zip $(zip-version)" > $@
+ BINDIR=$(ibdir) MANDIR=$(idir)/man/man1 )
+ echo "Zip $(zip-version)" > $@
# Some programs (like Wget and CMake) that use zlib need it to be dynamic
# so they use our custom build. So we won't force a static-only build.
#
# Note for a static-only build: Zlib's `./configure' doesn't use Autoconf's
# configure script, it just accepts a direct `--static' option.
-$(ibidir)/zlib: $(ibidir)/gzip \
- $(tdir)/zlib-$(zlib-version).tar.gz
- $(call gbuild, zlib-$(zlib-version)) \
- && echo "Zlib $(zlib-version)" > $@
+$(ibidir)/zlib-$(zlib-version): $(ibidir)/gzip-$(gzip-version)
+ tarball=zlib-$(zlib-version).tar.gz
+ $(call import-source, $(zlib-url), $(zlib-checksum))
+ $(call gbuild, zlib-$(zlib-version))
+ echo "Zlib $(zlib-version)" > $@
# GNU Tar: When built statically, tar gives a segmentation fault on
# unpacking Bash. So we'll build it dynamically. Note that technically, zip
# and unzip aren't dependencies of Tar, but for a clean build, we'll set
# Tar to be the last compression-related software (the first-set of
# software to be built).
-$(ibidir)/tar: $(ibidir)/xz \
- $(ibidir)/zip \
- $(ibidir)/gzip \
- $(ibidir)/zlib \
- $(ibidir)/bzip2 \
- $(ibidir)/unzip \
- $(tdir)/tar-$(tar-version).tar.gz
+$(ibidir)/tar-$(tar-version): \
+ $(ibidir)/xz-$(xz-version) \
+ $(ibidir)/zip-$(zip-version) \
+ $(ibidir)/gzip-$(gzip-version) \
+ $(ibidir)/zlib-$(zlib-version) \
+ $(ibidir)/bzip2-$(bzip2-version) \
+ $(ibidir)/unzip-$(unzip-version)
# Since all later programs depend on Tar, the configuration will be
# stuck here, only making Tar. So its more efficient to built it on
# multiple threads (when the user's Make doesn't pass down the
# number of threads).
- $(call gbuild, tar-$(tar-version), , , -j$(numthreads) V=1) \
- && echo "GNU Tar $(tar-version)" > $@
+ tarball=tar-$(tar-version).tar.gz
+ $(call import-source, $(tar-url), $(tar-checksum))
+ $(call gbuild, tar-$(tar-version), , , -j$(numthreads) V=1)
+ echo "GNU Tar $(tar-version)" > $@
@@ -481,8 +341,34 @@ $(ibidir)/tar: $(ibidir)/xz \
-# Level 2 (SECOND MOST BASIC): Bash and Make
-# ------------------------------------------
+# Level 2 (necessary for linking)
+#
+# Patchelf is necessary for some software on GNU/Linux systems, its job is
+# to manually insert RPATH into the dynamically-linked executable. Since
+# all the other software depend on Pathelf, to avoid manually repeating as
+# a prerequisite (and forgetting in others causing bugs), we'll put it as a
+# dependancy of 'tar'.
+$(ibidir)/patchelf-$(patchelf-version): $(ibidir)/tar-$(tar-version)
+ tarball=patchelf-$(patchelf-version).tar.gz
+ $(call import-source, $(patchelf-url), $(patchelf-checksum))
+ if [ x$(on_mac_os) = xyes ]; then
+ echo "" > $@
+ else
+ $(call gbuild, patchelf-$(patchelf-version))
+ echo "PatchELF $(patchelf-version)" > $@
+ fi
+
+
+
+
+
+
+
+
+
+
+# Level 3 (THIRD MOST BASIC): Bash
+# --------------------------------
#
# GNU Make and GNU Bash are the second layer that we'll need to build the
# basic dependencies.
@@ -492,8 +378,9 @@ $(ibidir)/tar: $(ibidir)/xz \
# function (for tilde expansion). The first can be disabled with
# `--disable-load', but unfortunately I don't know any way to fix the
# second. So, we'll have to build it dynamically for now.
-$(ibidir)/ncurses: $(ibidir)/tar \
- $(tdir)/ncurses-$(ncurses-version).tar.gz
+$(ibidir)/ncurses-$(ncurses-version): $(ibidir)/patchelf-$(patchelf-version)
+ tarball=ncurses-$(ncurses-version).tar.gz
+ $(call import-source, $(ncurses-url), $(ncurses-checksum))
# Delete the library that will be installed (so we can make sure
# the build process completed afterwards and reset the links).
@@ -578,17 +465,14 @@ $(ibidir)/ncurses: $(ibidir)/tar \
exit 1
fi
-$(ibidir)/readline: $(ibidir)/ncurses \
- $(tdir)/readline-$(readline-version).tar.gz
+$(ibidir)/readline-$(readline-version): \
+ $(ibidir)/ncurses-$(ncurses-version)
+ tarball=readline-$(readline-version).tar.gz
+ $(call import-source, $(readline-url), $(readline-checksum))
$(call gbuild, readline-$(readline-version), static, \
--with-curses --disable-install-examples, \
- SHLIB_LIBS="-lncursesw" -j$(numthreads)) \
- && echo "GNU Readline $(readline-version)" > $@
-
-$(ibidir)/patchelf: $(ibidir)/tar \
- $(tdir)/patchelf-$(patchelf-version).tar.gz
- $(call gbuild, patchelf-$(patchelf-version)) \
- && echo "PatchELF $(patchelf-version)" > $@
+ SHLIB_LIBS="-lncursesw" -j$(numthreads))
+ echo "GNU Readline $(readline-version)" > $@
# IMPORTANT: Even though we have enabled `rpath', Bash doesn't write the
@@ -620,16 +504,13 @@ $(ibidir)/patchelf: $(ibidir)/tar \
# $ tar cf bash-5.0.$number.tar bash-5.0.$number
# $ lzip --best bash-5.0.$number.tar
# $ rm -rf bash50-* bash-5.0.$number bash-5.0.tar.gz
+$(ibidir)/bash-$(bash-version): \
+ $(ibidir)/gettext-$(gettext-version) \
+ $(ibidir)/readline-$(readline-version)
-ifeq ($(on_mac_os),yes)
-needpatchelf =
-else
-needpatchelf = $(ibidir)/patchelf
-endif
-$(ibidir)/bash: $(needpatchelf) \
- $(ibidir)/gettext \
- $(ibidir)/readline \
- $(tdir)/bash-$(bash-version).tar.lz
+ # Download the tarball.
+ tarball=bash-$(bash-version).tar.lz
+ $(call import-source, $(bash-url), $(bash-checksum))
# Delete the (possibly) existing Bash executable in the project,
# let it use the default shell of the host.
@@ -655,9 +536,8 @@ $(ibidir)/bash: $(needpatchelf) \
# default. So, we have to manually include it, currently we are
# only doing this on GNU/Linux systems (using the `patchelf'
# program).
- if [ "x$(needpatchelf)" != x ]; then
- if [ -f $(ibdir)/bash ]; then
- $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/bash; fi
+ if [ -f $(ibdir)/patchelf ]; then
+ $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/bash;
fi
# To be generic, some systems use the `sh' command to call the
@@ -668,11 +548,8 @@ $(ibidir)/bash: $(needpatchelf) \
# Just to be sure that the installation step above went well,
# before making the link, we'll see if the file actually exists
# there.
- if [ -f $(ibdir)/bash ]; then
- ln -fs $(ibdir)/bash $(ibdir)/sh
- echo "GNU Bash $(bash-version)" > $@
- else
- echo "GNU Bash not built!"; exit 1; fi
+ ln -fs $(ibdir)/bash $(ibdir)/sh
+ echo "GNU Bash $(bash-version)" > $@
@@ -688,46 +565,45 @@ perl-conflddlflags =
else
perl-conflddlflags = -Dlddlflags="-shared $$LDFLAGS"
endif
-$(ibidir)/perl: $(ibidir)/tar \
- $(tdir)/perl-$(perl-version).tar.gz
+$(ibidir)/perl-$(perl-version): $(ibidir)/patchelf-$(patchelf-version)
+ tarball=perl-$(perl-version).tar.gz
+ $(call import-source, $(perl-url), $(perl-checksum))
major_version=$$(echo $(perl-version) \
| sed -e's/\./ /g' \
| awk '{printf("%d", $$1)}')
base_version=$$(echo $(perl-version) \
| sed -e's/\./ /g' \
| awk '{printf("%d.%d", $$1, $$2)}')
- cd $(ddir) \
- && rm -rf perl-$(perl-version) \
- && if ! tar xf $(word 1,$(filter $(tdir)/%,$^)); then \
- echo; echo "Tar error"; exit 1; \
- fi \
- && cd perl-$(perl-version) \
- && ./Configure -des \
- -Dusethreads \
- -Duseshrplib \
- -Dprefix=$(idir) \
- -Dvendorprefix=$(idir) \
- -Dprivlib=$(idir)/share/perl$$major_version/core_perl \
- -Darchlib=$(idir)/lib/perl$$major_version/$$base_version/core_perl \
- -Dsitelib=$(idir)/share/perl$$major_version/site_perl \
- -Dsitearch=$(idir)/lib/perl$$major_version/$$basever/site_perl \
- -Dvendorlib=$(idir)/share/perl$$major_version/vendor_perl \
- -Dvendorarch=$(idir)/lib/perl$$major_version/$$base_version/vendor_perl \
- -Dscriptdir=$(idir)/bin/core_perl \
- -Dsitescript=$(idir)/bin/site_perl \
- -Dvendorscript=$(idir)/bin/vendor_perl \
- -Dinc_version_list=none \
- -Dman1ext=1perl \
- -Dman3ext=3perl \
- -Dcccdlflags='-fPIC' \
- $(perl-conflddlflags) \
- -Dldflags="$$LDFLAGS" \
- && make -j$(numthreads) \
- && make install \
- && cd .. \
- && rm -rf perl-$(perl-version) \
- && cd $$topdir \
- && echo "Perl $(perl-version)" > $@
+ cd $(ddir)
+ rm -rf perl-$(perl-version)
+ tar xf $(tdir)/$$tarball
+ cd perl-$(perl-version)
+ ./Configure -des \
+ -Dusethreads \
+ -Duseshrplib \
+ -Dprefix=$(idir) \
+ -Dvendorprefix=$(idir) \
+ -Dprivlib=$(idir)/share/perl$$major_version/core_perl \
+ -Darchlib=$(idir)/lib/perl$$major_version/$$base_version/core_perl \
+ -Dsitelib=$(idir)/share/perl$$major_version/site_perl \
+ -Dsitearch=$(idir)/lib/perl$$major_version/$$basever/site_perl \
+ -Dvendorlib=$(idir)/share/perl$$major_version/vendor_perl \
+ -Dvendorarch=$(idir)/lib/perl$$major_version/$$base_version/vendor_perl \
+ -Dscriptdir=$(idir)/bin/core_perl \
+ -Dsitescript=$(idir)/bin/site_perl \
+ -Dvendorscript=$(idir)/bin/vendor_perl \
+ -Dinc_version_list=none \
+ -Dman1ext=1perl \
+ -Dman3ext=3perl \
+ -Dcccdlflags='-fPIC' \
+ $(perl-conflddlflags) \
+ -Dldflags="$$LDFLAGS"
+ make -j$(numthreads)
+ make install
+ cd ..
+ rm -rf perl-$(perl-version)
+ cd $$topdir
+ echo "Perl $(perl-version)" > $@
@@ -754,61 +630,70 @@ $(ibidir)/perl: $(ibidir)/tar \
# an error).
#
# Coreutils uses Perl to create man pages!
-$(ibidir)/coreutils: $(ibidir)/bash \
- $(ibidir)/perl \
- $(ibidir)/openssl \
- $(tdir)/coreutils-$(coreutils-version).tar.xz
- cd $(ddir) \
- && rm -rf coreutils-$(coreutils-version) \
- && if ! tar xf $(word 1,$(filter $(tdir)/%,$^)); then \
- echo; echo "Tar error"; exit 1; \
- fi \
- && cd coreutils-$(coreutils-version) \
- && sed -e's|\#\! /bin/sh|\#\! $(ibdir)/bash|' \
- -e's|\#\!/bin/sh|\#\! $(ibdir)/bash|' \
- configure > configure-tmp \
- && mv configure-tmp configure \
- && chmod +x configure \
- && ./configure --prefix=$(idir) SHELL=$(ibdir)/bash \
- LDFLAGS="$(LDFLAGS)" CPPFLAGS="$(CPPFLAGS)" \
- --disable-silent-rules --with-openssl=yes \
- && make SHELL=$(ibdir)/bash -j$(numthreads) \
- && make SHELL=$(ibdir)/bash install \
- && if [ x$(on_mac_os) != xyes ]; then \
- make SHELL=$(ibdir)/bash install DESTDIR=junkinst; \
- instprogs=$$(ls junkinst/$(ibdir)); \
- for f in $$instprogs; do \
- $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/$$f; \
- done; \
- echo "PatchELF applied to all programs."; \
- fi \
- && cd .. \
- && rm -rf coreutils-$(coreutils-version) \
- && echo "GNU Coreutils $(coreutils-version)" > $@
+$(ibidir)/coreutils-$(coreutils-version): \
+ $(ibidir)/bash-$(bash-version) \
+ $(ibidir)/perl-$(perl-version) \
+ $(ibidir)/openssl-$(openssl-version)
+
+ # Import, unpack and enter the source directory.
+ tarball=coreutils-$(coreutils-version).tar.xz
+ $(call import-source, $(coreutils-url), $(coreutils-checksum))
+ cd $(ddir)
+ rm -rf coreutils-$(coreutils-version)
+ tar xf $(tdir)/$$tarball
+ cd coreutils-$(coreutils-version)
+
+ # Set the configure script to use our shell, note that we can't
+ # assume GNU SED here yet (it installs after Coreutils).
+ sed -e's|\#\! /bin/sh|\#\! $(ibdir)/bash|' \
+ -e's|\#\!/bin/sh|\#\! $(ibdir)/bash|' \
+ configure > configure-tmp
+ mv configure-tmp configure
+ chmod +x configure
+
+ # Configure, build and install Coreutils.
+ ./configure --prefix=$(idir) SHELL=$(ibdir)/bash \
+ LDFLAGS="$(LDFLAGS)" CPPFLAGS="$(CPPFLAGS)" \
+ --disable-silent-rules --with-openssl=yes
+ make SHELL=$(ibdir)/bash -j$(numthreads)
+ make SHELL=$(ibdir)/bash install
+
+ # Fix RPATH if necessary.
+ if [ -f $(ibdir)/patchelf ]; then
+ make SHELL=$(ibdir)/bash install DESTDIR=junkinst
+ instprogs=$$(ls junkinst/$(ibdir))
+ for f in $$instprogs; do
+ $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/$$f
+ done
+ echo "PatchELF applied to all programs."
+ fi
+
+ # Come back up to the unpacking directory, delete the source
+ # directory and write the final target.
+ cd ..
+ rm -rf coreutils-$(coreutils-version)
+ echo "GNU Coreutils $(coreutils-version)" > $@
# OpenSSL
#
-# Some programs/libraries later need dynamic linking. So we'll build libssl
-# (and libcrypto) dynamically also.
-#
# Until we find a nice and generic way to create an updated CA file in the
# project, the certificates will be available in a file for this project
# along with the other tarballs.
-#
-# In case you do want a static OpenSSL and libcrypto, then uncomment the
-# following conditional and put $(openssl-static) in the configure options.
-#
-#ifeq ($(static_build),yes)
-#openssl-static = no-dso no-dynamic-engine no-shared
-#endif
$(idir)/etc:; mkdir $@
-# Note: cert.pm has to be AFTER the tarball, otherwise the build script
-# will try to unpack cert.pm and crash (it unpacks the first dependency
-# under `tdir').
-$(ibidir)/openssl: $(ibidir)/perl \
- $(tdir)/openssl-$(openssl-version).tar.gz \
- $(tdir)/cert.pem \
- | $(idir)/etc
+$(idir)/etc/ssl: | $(idir)/etc; mkdir $@
+$(ibidir)/openssl-$(openssl-version): $(ibidir)/perl-$(perl-version) \
+ | $(idir)/etc/ssl
+
+ # First download the certificates and copy them into the
+ # installation directory.
+ tarball=cert.pem
+ $(call import-source, $(cert-url), $(cert-checksum))
+ cp $(tdir)/cert.pem $(idir)/etc/ssl/cert.pem
+
+ # Now download the OpenSSL tarball.
+ tarball=openssl-$(openssl-version).tar.gz
+ $(call import-source, $(openssl-url), $(openssl-checksum))
+
# According to OpenSSL's Wiki (link bellow), it can't automatically
# detect Mac OS's structure. It will need some help. So we'll use
# the `on_mac_os' Make variable that we defined in the configure
@@ -816,18 +701,10 @@ $(ibidir)/openssl: $(ibidir)/perl \
# environment variable.
#
# https://wiki.openssl.org/index.php/Compilation_and_Installation
- #
- # Bug 58263 (https://savannah.nongnu.org/bugs/?58263): In OpenSSL
- # Version 1.1.1a (also checked in 1.1.1g), `openssl/ec.h' fails to
- # include `openssl/openconf.h' on some OSs. The SED hack below
- # inserts a hardwired element of `openssl/openconf.h' that is
- # needed to include sections of code `f` that are deprecated in
- # 1.2.0, but not yet in 1.1.1. This problem may be solved in
- # version 1.2.x, so please check again in that bug.
- if [ x$(on_mac_os) = xyes ]; then \
- export KERNEL_BITS=64; \
- copt="shared no-ssl2 no-ssl3 enable-ec_nistp_64_gcc_128"; \
- fi; \
+ if [ x$(on_mac_os) = xyes ]; then
+ export KERNEL_BITS=64
+ copt="shared no-ssl2 no-ssl3 enable-ec_nistp_64_gcc_128"
+ fi
$(call gbuild, openssl-$(openssl-version), , \
zlib \
$$copt \
@@ -835,19 +712,26 @@ $(ibidir)/openssl: $(ibidir)/perl \
--openssldir=$(idir)/etc/ssl \
--with-zlib-lib=$(ildir) \
--with-zlib-include=$(idir)/include, \
- -j$(numthreads), , ./config ) \
- && mv -v $(idir)/include/openssl/ec.h $(idir)/include/openssl/ec.h.orig \
- && sed -e 's,\(# include .openssl/opensslconf\.h.\),\1\n#ifndef DEPRECATEDIN_1_2_0\n#define DEPRECATEDIN_1_2_0(f) f;\n#endif\n,' \
- $(idir)/include/openssl/ec.h.orig > $(idir)/include/openssl/ec.h \
- && cp $(tdir)/cert.pem $(idir)/etc/ssl/cert.pem \
- && if [ $$? = 0 ]; then \
- if [ x$(on_mac_os) = xyes ]; then \
- echo "No need to fix rpath in libssl"; \
- else \
- patchelf --set-rpath $(ildir) $(ildir)/libssl.so; \
- fi; \
- echo "OpenSSL $(openssl-version)" > $@; \
- fi
+ -j$(numthreads), , ./config )
+
+ # Manually insert RPATH inside the OpenSSL library.
+ if [ -f $(ibdir)/patchelf ]; then
+ patchelf --set-rpath $(ildir) $(ildir)/libssl.so; \
+ fi
+
+ # Bug 58263 (https://savannah.nongnu.org/bugs/?58263): In OpenSSL
+ # Version 1.1.1a (also checked in 1.1.1g), `openssl/ec.h' fails to
+ # include `openssl/openconf.h' on some OSs. The SED hack below
+ # inserts a hardwired element of `openssl/openconf.h' that is
+ # needed to include sections of code `f` that are deprecated in
+ # 1.2.0, but not yet in 1.1.1. This problem may be solved in
+ # version 1.2.x, so please check again in that bug.
+ mv -v $(idir)/include/openssl/ec.h $(idir)/include/openssl/ec.h.orig
+ sed -e 's,\(# include .openssl/opensslconf\.h.\),\1\n#ifndef DEPRECATEDIN_1_2_0\n#define DEPRECATEDIN_1_2_0(f) f;\n#endif\n,' \
+ $(idir)/include/openssl/ec.h.orig > $(idir)/include/openssl/ec.h
+
+ # Build the final target.
+ echo "OpenSSL $(openssl-version)" > $@
@@ -864,8 +748,11 @@ $(ibidir)/openssl: $(ibidir)/perl \
# them. Note that if it does link with them, the configuration will crash
# when the library is updated/changed by the host, and the whole purpose of
# this project is avoid dependency on the host as much as possible.
-$(ibidir)/curl: $(ibidir)/coreutils \
- $(tdir)/curl-$(curl-version).tar.gz
+$(ibidir)/curl-$(curl-version): $(ibidir)/coreutils-$(coreutils-version)
+
+ tarball=curl-$(curl-version).tar.gz
+ $(call import-source, $(curl-url), $(curl-checksum))
+
$(call gbuild, curl-$(curl-version), , \
LIBS="-pthread" \
--with-zlib=$(ildir) \
@@ -882,11 +769,12 @@ $(ibidir)/curl: $(ibidir)/coreutils \
--without-axtls \
--disable-ldaps \
--disable-ldap \
- --without-nss, V=1) \
- && if [ "x$(needpatchelf)" != x ]; then \
- $(ibdir)/patchelf --set-rpath $(ildir) $(ildir)/libcurl.so; \
- fi \
- && echo "cURL $(curl-version)" > $@
+ --without-nss, V=1)
+
+ if [ -f $(ibdir)/patchelf ]; then
+ $(ibdir)/patchelf --set-rpath $(ildir) $(ildir)/libcurl.so
+ fi
+ echo "cURL $(curl-version)" > $@
# GNU Wget
@@ -902,13 +790,18 @@ $(ibidir)/curl: $(ibidir)/coreutils \
# building as part of this project. So to avoid too much dependency on the
# host system (especially a crash when these libraries are updated on the
# host), they are disabled here.
-$(ibidir)/wget: $(ibidir)/libiconv \
- $(ibidir)/coreutils \
- $(tdir)/wget-$(wget-version).tar.lz
+$(ibidir)/wget-$(wget-version): \
+ $(ibidir)/libiconv-$(libiconv-version) \
+ $(ibidir)/coreutils-$(coreutils-version)
+
+ # Download the tarball.
+ tarball=wget-$(wget-version).tar.lz
+ $(call import-source, $(wget-url), $(wget-checksum))
+
# We need to explicitly disable `libiconv', because of the
# `pkg-config' and `libiconv' problem.
- libs="-pthread"; \
- if [ x$(needs_ldl) = xyes ]; then libs="$$libs -ldl"; fi; \
+ libs="-pthread"
+ if [ x$(needs_ldl) = xyes ]; then libs="$$libs -ldl"; fi
$(call gbuild, wget-$(wget-version), , \
LIBS="$$LIBS $$libs" \
--with-libssl-prefix=$(idir) \
@@ -921,8 +814,8 @@ $(ibidir)/wget: $(ibidir)/libiconv \
--without-libidn \
--disable-pcre2 \
--disable-pcre \
- --disable-iri, V=1) \
- && echo "GNU Wget $(wget-version)" > $@
+ --disable-iri, V=1 -j$(numthreads))
+ echo "GNU Wget $(wget-version)" > $@
@@ -937,138 +830,172 @@ $(ibidir)/wget: $(ibidir)/libiconv \
# process of the higher-level programs and libraries. Note that during the
# building of those higher-level programs (after this Makefile finishes),
# there is no access to the system's PATH.
-$(ibidir)/diffutils: $(ibidir)/coreutils \
- $(tdir)/diffutils-$(diffutils-version).tar.xz
- $(call gbuild, diffutils-$(diffutils-version), static,,V=1) \
- && echo "GNU Diffutils $(diffutils-version)" > $@
-
-$(ibidir)/file: $(ibidir)/coreutils \
- $(tdir)/file-$(file-version).tar.gz
- $(call gbuild, file-$(file-version), static,,V=1) \
- && echo "File $(file-version)" > $@
-
-$(ibidir)/findutils: $(ibidir)/coreutils \
- $(tdir)/findutils-$(findutils-version).tar.xz
- $(call gbuild, findutils-$(findutils-version), static,,V=1) \
- && echo "GNU Findutils $(findutils-version)" > $@
-
-$(ibidir)/gawk: $(ibidir)/gmp \
- $(ibidir)/mpfr \
- $(ibidir)/coreutils \
- $(tdir)/gawk-$(gawk-version).tar.lz
+$(ibidir)/diffutils-$(diffutils-version): \
+ $(ibidir)/coreutils-$(coreutils-version)
+ tarball=diffutils-$(diffutils-version).tar.xz
+ $(call import-source, $(diffutils-url), $(diffutils-checksum))
+ $(call gbuild, diffutils-$(diffutils-version), static,,V=1)
+ echo "GNU Diffutils $(diffutils-version)" > $@
+
+$(ibidir)/file-$(file-version): $(ibidir)/coreutils-$(coreutils-version)
+ tarball=file-$(file-version).tar.gz
+ $(call import-source, $(file-url), $(file-checksum))
+ $(call gbuild, file-$(file-version), static,,V=1)
+ echo "File $(file-version)" > $@
+
+$(ibidir)/findutils-$(findutils-version): \
+ $(ibidir)/coreutils-$(coreutils-version)
+ tarball=findutils-$(findutils-version).tar.xz
+ $(call import-source, $(findutils-url), $(findutils-checksum))
+ $(call gbuild, findutils-$(findutils-version), static,,V=1)
+ echo "GNU Findutils $(findutils-version)" > $@
+
+$(ibidir)/gawk-$(gawk-version): \
+ $(ibidir)/gmp-$(gmp-version) \
+ $(ibidir)/mpfr-$(mpfr-version) \
+ $(ibidir)/coreutils-$(coreutils-version)
+
+ # Download the tarball.
+ tarball=gawk-$(gawk-version).tar.lz
+ $(call import-source, $(gawk-url), $(gawk-checksum))
+
# AWK doesn't include RPATH by default, so we'll have to manually
# include it using the `patchelf' program (which was a dependency
# of Bash). Just note that AWK produces two executables (for
# example `gawk-4.2.1' and `gawk') and a symbolic link `awk' to one
# of those executables.
$(call gbuild, gawk-$(gawk-version), static, \
- --with-readline=$(idir)) \
- && if [ "x$(needpatchelf)" != x ]; then \
- if [ -f $(ibdir)/gawk ]; then \
- $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/gawk; \
- fi; \
- if [ -f $(ibdir)/gawk-$(gawk-version) ]; then \
- $(ibdir)/patchelf --set-rpath $(ildir) \
- $(ibdir)/gawk-$(gawk-version); \
- fi; \
- fi \
- && echo "GNU AWK $(gawk-version)" > $@
-
-$(ibidir)/libiconv: $(ibidir)/pkg-config \
- $(tdir)/libiconv-$(libiconv-version).tar.gz
- $(call gbuild, libiconv-$(libiconv-version), static) \
- && echo "GNU libiconv $(libiconv-version)" > $@
-
-$(ibidir)/libunistring: $(ibidir)/libiconv \
- $(tdir)/libunistring-$(libunistring-version).tar.xz
+ --with-readline=$(idir))
+
+ # Correct the RPATH on systems that have installed patchelf.
+ if [ -f $(ibdir)/patchelf ]; then
+ if [ -f $(ibdir)/gawk ]; then
+ $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/gawk
+ fi
+ if [ -f $(ibdir)/gawk-$(gawk-version) ]; then
+ $(ibdir)/patchelf --set-rpath $(ildir) \
+ $(ibdir)/gawk-$(gawk-version);
+ fi
+ fi
+
+ # Build final target.
+ echo "GNU AWK $(gawk-version)" > $@
+
+$(ibidir)/libiconv-$(libiconv-version): \
+ $(ibidir)/pkg-config-$(pkgconfig-version)
+ tarball=libiconv-$(libiconv-version).tar.gz
+ $(call import-source, $(libiconv-url), $(libiconv-checksum))
+ $(call gbuild, libiconv-$(libiconv-version), static)
+ echo "GNU libiconv $(libiconv-version)" > $@
+
+$(ibidir)/libunistring-$(libunistring-version): \
+ $(ibidir)/libiconv-$(libiconv-version)
+ tarball=libunistring-$(libunistring-version).tar.xz
+ $(call import-source, $(libunistring-url), $(libunistring-checksum))
$(call gbuild, libunistring-$(libunistring-version), static,, \
- -j$(numthreads)) \
- && echo "GNU libunistring $(libunistring-version)" > $@
+ -j$(numthreads))
+ echo "GNU libunistring $(libunistring-version)" > $@
-$(ibidir)/libxml2: $(ibidir)/tar \
- $(tdir)/libxml2-$(libxml2-version).tar.gz
+$(ibidir)/libxml2-$(libxml2-version): $(ibidir)/patchelf-$(patchelf-version)
# The libxml2 tarball also contains Python bindings which are built
# and installed to a system directory by default. If you don't need
# the Python bindings, the easiest solution is to compile without
# Python support: `./configure --without-python'. If you really need
# the Python bindings, use `--with-python-install-dir=DIR' instead.
+ tarball=libxml2-$(libxml2-version).tar.gz
+ $(call import-source, $(libxml2-url), $(libxml2-checksum))
$(call gbuild, libxml2-$(libxml2-version), static, \
- --without-python) \
- && echo "Libxml2 $(libxml2-version)" > $@
-
-$(ibidir)/gettext: $(ibidir)/m4 \
- $(ibidir)/libxml2 \
- $(ibidir)/ncurses \
- $(ibidir)/libiconv \
- $(ibidir)/libunistring \
- $(tdir)/gettext-$(gettext-version).tar.xz
- $(call gbuild, gettext-$(gettext-version), static, V=1) \
- && echo "GNU gettext $(gettext-version)" > $@
-
-$(ibidir)/git: $(ibidir)/curl \
- $(ibidir)/gettext \
- $(ibidir)/libiconv \
- $(tdir)/git-$(git-version).tar.xz
- if [ x$(on_mac_os) = xyes ]; then \
- export LDFLAGS="$$LDFLAGS -lcharset"; \
- fi; \
+ --without-python, V=1)
+ echo "Libxml2 $(libxml2-version)" > $@
+
+$(ibidir)/gettext-$(gettext-version): \
+ $(ibidir)/m4-$(m4-version) \
+ $(ibidir)/libxml2-$(libxml2-version) \
+ $(ibidir)/ncurses-$(ncurses-version) \
+ $(ibidir)/libiconv-$(libiconv-version) \
+ $(ibidir)/libunistring-$(libunistring-version)
+ tarball=gettext-$(gettext-version).tar.xz
+ $(call import-source, $(gettext-url), $(gettext-checksum))
+ $(call gbuild, gettext-$(gettext-version), static,, \
+ V=1 -j$(numthreads))
+ echo "GNU gettext $(gettext-version)" > $@
+
+$(ibidir)/git-$(git-version): \
+ $(ibidir)/curl-$(curl-version) \
+ $(ibidir)/gettext-$(gettext-version) \
+ $(ibidir)/libiconv-$(libiconv-version)
+ tarball=git-$(git-version).tar.xz
+ if [ x$(on_mac_os) = xyes ]; then
+ export LDFLAGS="$$LDFLAGS -lcharset"
+ fi
+ $(call import-source, $(git-url), $(git-checksum))
$(call gbuild, git-$(git-version), static, \
--without-tcltk --with-shell=$(ibdir)/bash \
- --with-iconv=$(idir), V=1) \
- && echo "Git $(git-version)" > $@
-
-$(ibidir)/gmp: $(ibidir)/m4 \
- $(ibidir)/coreutils \
- $(tdir)/gmp-$(gmp-version).tar.lz
+ --with-iconv=$(idir), V=1 -j$(numthreads))
+ echo "Git $(git-version)" > $@
+
+$(ibidir)/gmp-$(gmp-version): \
+ $(ibidir)/m4-$(m4-version) \
+ $(ibidir)/coreutils-$(coreutils-version)
+ tarball=gmp-$(gmp-version).tar.lz
+ $(call import-source, $(gmp-url), $(gmp-checksum))
$(call gbuild, gmp-$(gmp-version), static, \
- --enable-cxx --enable-fat, ,make check) \
- && echo "GNU Multiple Precision Arithmetic Library $(gmp-version)" > $@
+ --enable-cxx --enable-fat, \
+ -j$(numthreads) ,make check)
+ echo "GNU Multiple Precision Arithmetic Library $(gmp-version)" > $@
# On Mac OS, libtool does different things, so to avoid confusion, we'll
# prefix GNU's libtool executables with `glibtool'.
-$(ibidir)/glibtool: $(ibidir)/m4 \
- $(tdir)/libtool-$(libtool-version).tar.xz
+$(ibidir)/libtool-$(libtool-version): $(ibidir)/m4-$(m4-version)
+ tarball=libtool-$(libtool-version).tar.xz
+ $(call import-source, $(libtool-url), $(libtool-checksum))
$(call gbuild, libtool-$(libtool-version), static, \
- --program-prefix=g, V=1) \
- && ln -s $(ibdir)/glibtoolize $(ibdir)/libtoolize \
- && echo "GNU Libtool $(libtool-version)" > $@
-
-$(ibidir)/grep: $(ibidir)/coreutils \
- $(tdir)/grep-$(grep-version).tar.xz
- $(call gbuild, grep-$(grep-version), static,,V=1) \
- && echo "GNU Grep $(grep-version)" > $@
-
-$(ibidir)/libbsd: $(ibidir)/coreutils \
- $(tdir)/libbsd-$(libbsd-version).tar.xz
- $(call gbuild, libbsd-$(libbsd-version), static,,V=1) \
- && echo "Libbsd $(libbsd-version)" > $@
+ --program-prefix=g, V=1 -j$(numthreads))
+ ln -s $(ibdir)/glibtoolize $(ibdir)/libtoolize
+ echo "GNU Libtool $(libtool-version)" > $@
+
+$(ibidir)/grep-$(grep-version): $(ibidir)/coreutils-$(coreutils-version)
+ tarball=grep-$(grep-version).tar.xz
+ $(call import-source, $(grep-url), $(grep-checksum))
+ $(call gbuild, grep-$(grep-version), static,,V=1)
+ echo "GNU Grep $(grep-version)" > $@
+
+$(ibidir)/libbsd-$(libbsd-version): $(ibidir)/coreutils-$(coreutils-version)
+ tarball=libbsd-$(libbsd-version).tar.xz
+ $(call import-source, $(libbsd-url), $(libbsd-checksum))
+ if [ x$(on_mac_os) = xyes ]; then
+ echo "" > $@
+ else
+ $(call gbuild, libbsd-$(libbsd-version), static,,V=1)
+ echo "Libbsd $(libbsd-version)" > $@
+ fi
# We need to apply a patch to the M4 source to be used properly on macOS.
# The patch [1] was inspired by Homebrew's build instructions [1].
#
# [1] https://raw.githubusercontent.com/macports/macports-ports/edf0ee1e2cf/devel/m4/files/secure_snprintf.patch
# [2] https://github.com/Homebrew/homebrew-core/blob/master/Formula/m4.rb
-$(ibidir)/m4: $(ibidir)/texinfo \
- $(tdir)/m4-$(m4-version).tar.gz
- cd $(ddir); \
- unpackdir=m4-$(m4-version); \
- rm -rf $$unpackdir \
- && if ! tar xf $(word 1,$(filter $(tdir)/%,$^)); then \
- echo; echo "Tar error"; exit 1; \
- fi \
- && cd $$unpackdir \
- && if [ x$(on_mac_os) = xyes ]; then \
- sed 's|if !(((__GLIBC__ > 2|if !defined(__APPLE__) \&\& !(((__GLIBC__ > 2|' \
- lib/vasnprintf.c > lib/vasnprintf_edited.c; \
- mv lib/vasnprintf_edited.c lib/vasnprintf.c; \
- fi \
- && ./configure --prefix=$(idir) LDFLAGS="$(LDFLAGS)" \
- CPPFLAGS="$(CPPFLAGS)" \
- && make V=1 -j$(numthreads) \
- && make V=1 install \
- && cd .. \
- && rm -rf $$unpackdir \
- && echo "GNU M4 $(m4-version)" > $@
+$(ibidir)/m4-$(m4-version): $(ibidir)/texinfo-$(texinfo-version)
+ tarball=m4-$(m4-version).tar.gz
+ $(call import-source, $(m4-url), $(m4-checksum))
+ cd $(ddir)
+ unpackdir=m4-$(m4-version)
+ rm -rf $$unpackdir
+ tar xf $(tdir)/$$tarball
+ mv m4-* $$unpackdir
+ cd $$unpackdir
+ if [ x$(on_mac_os) = xyes ]; then
+ sed 's|if !(((__GLIBC__ > 2|if !defined(__APPLE__) \&\& !(((__GLIBC__ > 2|' \
+ lib/vasnprintf.c > lib/vasnprintf_edited.c
+ mv lib/vasnprintf_edited.c lib/vasnprintf.c
+ fi
+ ./configure --prefix=$(idir) LDFLAGS="$(LDFLAGS)" \
+ CPPFLAGS="$(CPPFLAGS)"
+ make V=1 -j$(numthreads)
+ make V=1 install
+ cd ..
+ rm -rf $$unpackdir
+ echo "GNU M4 $(m4-version)" > $@
# Metastore is used (through a Git hook) to restore the source modification
# dates of files after a Git checkout. Another Git hook saves all file
@@ -1087,17 +1014,16 @@ $(ibidir)/m4: $(ibidir)/texinfo \
#
# Libbsd is not necessary on macOS systems, because macOS is already a
# BSD-based distribution. But on GNU/Linux systems, it is necessary.
-ifeq ($(on_mac_os),yes)
-needlibbsd =
-else
-needlibbsd = $(ibidir)/libbsd
-endif
-$(ibidir)/metastore: $(needlibbsd) \
- $(ibidir)/sed \
- $(ibidir)/git \
- $(ibidir)/gawk \
- $(ibidir)/coreutils \
- $(tdir)/metastore-$(metastore-version).tar.gz
+$(ibidir)/metastore-$(metastore-version): \
+ $(ibidir)/sed-$(sed-version) \
+ $(ibidir)/git-$(git-version) \
+ $(ibidir)/gawk-$(gawk-version) \
+ $(ibidir)/libbsd-$(libbsd-version) \
+ $(ibidir)/coreutils-$(coreutils-version)
+
+ # Download the tarball.
+ tarball=metastore-$(metastore-version).tar.gz
+ $(call import-source, $(metastore-url), $(metastore-checksum))
# Metastore doesn't have any `./configure' script. So we'll just
# call `pwd' as a place-holder for the `./configure' command.
@@ -1114,54 +1040,61 @@ $(ibidir)/metastore: $(needlibbsd) \
# are currently only available in a fork of `metastore' hosted at:
# https://github.com/mohammad-akhlaghi/metastore
#
- # We want to inform the user if Metastore isn't built, so we don't
- # continue the call to `gbuild' with an `&&'.
- #
# Checking for presence of `.git'. When the project source is
# downloaded from a non-Git source (for example from arXiv), there
# is no `.git' directory to work with. So until we find a better
# solution, avoid the step to to add the Git hooks.
current_dir=$$(pwd); \
$(call gbuild, metastore-$(metastore-version), static,, \
- NO_XATTR=1 V=1,,pwd,PREFIX=$(idir)); \
- if [ -f $(ibdir)/metastore ]; then \
- if [ "x$(needpatchelf)" != x ]; then \
- $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/metastore; \
- fi; \
- if [ -d .git ]; then \
- user=$$(whoami); \
- group=$$(groups | awk '{print $$1}'); \
- cd $$current_dir; \
- for f in pre-commit post-checkout; do \
+ NO_XATTR=1 V=1,,pwd,PREFIX=$(idir))
+
+ # Correct RPATH when necessary.
+ if [ -f $(ibdir)/patchelf ]; then
+ $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/metastore
+ fi
+
+ # If this project is being built in a directory version controlled
+ # by Git, copy the hooks into the Git configuation.
+ if [ -f $(ibdir)/metastore ]; then
+ if [ -d .git ]; then
+ user=$$(whoami)
+ group=$$(groups | awk '{print $$1}')
+ cd $$current_dir
+ for f in pre-commit post-checkout; do
sed -e's|@USER[@]|'$$user'|g' \
-e's|@GROUP[@]|'$$group'|g' \
-e's|@BINDIR[@]|$(ibdir)|g' \
-e's|@TOP_PROJECT_DIR[@]|'$$current_dir'|g' \
- reproduce/software/shell/git-$$f > .git/hooks/$$f \
- && chmod +x .git/hooks/$$f; \
- done; \
- fi \
- && echo "Metastore (forked) $(metastore-version)" > $@; \
- else \
- echo; echo; echo; \
- echo "*****************"; \
- echo "metastore couldn't be installed!"; \
- echo; \
- echo "Its used for preserving timestamps on Git commits."; \
- echo "Its useful for development, not simple running of "; \
- echo "the project. So we won't stop the configuration "; \
- echo "because it wasn't built."; \
- echo "*****************"; \
+ reproduce/software/shell/git-$$f > .git/hooks/$$f
+ chmod +x .git/hooks/$$f
+ done
+ fi
+ echo "Metastore (forked) $(metastore-version)" > $@
+ else
+ echo; echo; echo
+ echo "*****************"
+ echo "metastore couldn't be installed!"
+ echo
+ echo "Its used for preserving timestamps on Git commits."
+ echo "Its useful for development, not simple running of "
+ echo "the project. So we won't stop the configuration "
+ echo "because it wasn't built."
+ echo "*****************"
+ echo "" > $@
fi
+$(ibidir)/mpfr-$(mpfr-version): $(ibidir)/gmp-$(gmp-version)
+ tarball=mpfr-$(mpfr-version).tar.xz
+ $(call import-source, $(mpfr-url), $(mpfr-checksum))
+ $(call gbuild, mpfr-$(mpfr-version), static, , , make check)
+ echo "GNU Multiple Precision Floating-Point Reliably $(mpfr-version)" > $@
-$(ibidir)/mpfr: $(ibidir)/gmp \
- $(tdir)/mpfr-$(mpfr-version).tar.xz
- $(call gbuild, mpfr-$(mpfr-version), static, , , make check) \
- && echo "GNU Multiple Precision Floating-Point Reliably $(mpfr-version)" > $@
+$(ibidir)/pkg-config-$(pkgconfig-version): $(ibidir)/patchelf-$(patchelf-version)
+
+ # Download the tarball.
+ tarball=pkg-config-$(pkgconfig-version).tar.gz
+ $(call import-source, $(pkgconfig-url), $(pkgconfig-checksum))
-$(ibidir)/pkg-config: $(ibidir)/tar \
- $(tdir)/pkg-config-$(pkgconfig-version).tar.gz
# An existing `libiconv' can cause a conflict with `pkg-config',
# this is why `libiconv' depends on `pkg-config'. On a clean build,
# `pkg-config' is built first. But when we don't have a clean build
@@ -1174,32 +1107,36 @@ $(ibidir)/pkg-config: $(ibidir)/tar \
# (GCC) installed that doesn't support some necessary features of
# building Glib (as part of pkg-config). So to be safe, for Mac
# systems, we'll make sure it will use LLVM's Clang.
- if [ x$(on_mac_os) = xyes ]; then export compiler="CC=clang"; \
- else export compiler=""; \
- fi; \
+ if [ x$(on_mac_os) = xyes ]; then export compiler="CC=clang"
+ else export compiler=""
+ fi
$(call gbuild, pkg-config-$(pkgconfig-version), static, \
$$compiler --with-internal-glib \
- --with-pc-path=$(ildir)/pkgconfig, V=1) \
- && echo "pkg-config $(pkgconfig-version)" > $@
-
-$(ibidir)/sed: $(ibidir)/coreutils \
- $(tdir)/sed-$(sed-version).tar.xz
- $(call gbuild, sed-$(sed-version), static,,V=1) \
- && echo "GNU Sed $(sed-version)" > $@
-
-$(ibidir)/texinfo: $(ibidir)/perl \
- $(tdir)/texinfo-$(texinfo-version).tar.xz
- $(call gbuild, texinfo-$(texinfo-version), static) \
- && if [ "x$(needpatchelf)" != x ]; then \
- $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/info; \
- $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/install-info; \
- fi \
- && echo "GNU Texinfo $(texinfo-version)" > $@
+ --with-pc-path=$(ildir)/pkgconfig, V=1)
+ echo "pkg-config $(pkgconfig-version)" > $@
+
+$(ibidir)/sed-$(sed-version): $(ibidir)/coreutils-$(coreutils-version)
+ tarball=sed-$(sed-version).tar.xz
+ $(call import-source, $(sed-url), $(sed-checksum))
+ $(call gbuild, sed-$(sed-version), static,,V=1)
+ echo "GNU Sed $(sed-version)" > $@
+
+$(ibidir)/texinfo-$(texinfo-version): \
+ $(ibidir)/perl-$(perl-version)
+ tarball=texinfo-$(texinfo-version).tar.xz
+ $(call import-source, $(texinfo-url), $(texinfo-checksum))
+ $(call gbuild, texinfo-$(texinfo-version), static)
+ if [ -f $(ibdir)/patchelf ]; then
+ $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/info
+ $(ibdir)/patchelf --set-rpath $(ildir) $(ibdir)/install-info
+ fi
+ echo "GNU Texinfo $(texinfo-version)" > $@
-$(ibidir)/which: $(ibidir)/coreutils \
- $(tdir)/which-$(which-version).tar.gz
- $(call gbuild, which-$(which-version), static) \
- && echo "GNU Which $(which-version)" > $@
+$(ibidir)/which-$(which-version): $(ibidir)/coreutils-$(coreutils-version)
+ tarball=/which-$(which-version).tar.gz
+ $(call import-source, $(which-url), $(which-checksum))
+ $(call gbuild, which-$(which-version), static)
+ echo "GNU Which $(which-version)" > $@
@@ -1212,80 +1149,86 @@ $(ibidir)/which: $(ibidir)/coreutils \
# GCC and its prerequisites
# -------------------------
+$(ibidir)/isl-$(isl-version): $(ibidir)/gmp-$(gmp-version)
+ tarball=isl-$(isl-version).tar.bz2
+ $(call import-source, $(isl-url), $(isl-checksum))
+ if [ $(host_cc) = 1 ]; then
+ echo "" > $@
+ else
+ $(call gbuild, isl-$(isl-version), static, , \
+ V=1 -j$(numthreads))
+ echo "GNU Integer Set Library $(isl-version)" > $@
+ fi
-$(ibidir)/isl: $(ibidir)/gmp \
- $(tdir)/isl-$(isl-version).tar.bz2
- $(call gbuild, isl-$(isl-version), static, , V=1) \
- && echo "GNU Integer Set Library $(isl-version)" > $@
-
-$(ibidir)/mpc: $(ibidir)/mpfr \
- $(tdir)/mpc-$(mpc-version).tar.gz
- $(call gbuild, mpc-$(mpc-version), static, , , make check) \
- && echo "GNU Multiple Precision Complex library" > $@
-
-# Binutils' assembler (`as') and linker (`ld') will conflict with other
-# compilers. So until then, on Mac systems we'll use the host opertating
-# system's Binutils equivalents by just making links.
-
-ifeq ($(host_cc),1)
-gcc-prerequisites =
-else
-gcc-prerequisites = $(ibidir)/isl \
- $(ibidir)/mpc
-endif
-
-ifeq ($(on_mac_os),yes)
-binutils-tarball =
-else
-binutils-tarball = $(tdir)/binutils-$(binutils-version).tar.lz
-endif
+$(ibidir)/mpc-$(mpc-version): $(ibidir)/mpfr-$(mpfr-version)
+ tarball=mpc-$(mpc-version).tar.gz
+ $(call import-source, $(mpc-url), $(mpc-checksum))
+ if [ $(host_cc) = 1 ]; then
+ echo "" > $@
+ else
+ $(call gbuild, mpc-$(mpc-version), static, , \
+ -j$(numthreads), make check)
+ echo "GNU Multiple Precision Complex library" > $@
+ fi
# The installation of Binutils can cause problems during the build of other
# programs (http://savannah.nongnu.org/bugs/?56294). Therefore, we'll set
# all other basic programs as Binutils prerequisite and GCC (the final
# basic target) ultimately just depends on Binutils.
-#
-# The `ld' linker of Binutils needs several `*crt*.o' file to run. On some
-# systems these object files aren't installed in standard places. We
-# defined `LIBRARY_PATH' and that fixed the problem for many
-# systems. However, some software (for example ImageMagick) over-write
-# `LIBRARY_PATH', therefore there is no other way than to put a link to
-# these necessary files in our local build directory. IMPORTANT NOTE:
-# later, when we build the GNU C Library in the project, we should remove
-# this step.
-$(ibidir)/binutils: $(ibidir)/sed \
- $(ibidir)/wget \
- $(ibidir)/grep \
- $(ibidir)/file \
- $(ibidir)/gawk \
- $(ibidir)/which \
- $(ibidir)/glibtool \
- $(binutils-tarball) \
- $(ibidir)/metastore \
- $(ibidir)/findutils \
- $(ibidir)/diffutils \
- $(ibidir)/coreutils \
- $(gcc-prerequisites)
-
- if [ x$(on_mac_os) = xyes ]; then \
- $(call makelink,as); \
- $(call makelink,ar); \
- $(call makelink,ld); \
- $(call makelink,nm); \
- $(call makelink,ps); \
- $(call makelink,ranlib); \
- echo "" > $@; \
- else \
+$(ibidir)/binutils-$(binutils-version): \
+ $(ibidir)/sed-$(sed-version) \
+ $(ibidir)/isl-$(isl-version) \
+ $(ibidir)/mpc-$(mpc-version) \
+ $(ibidir)/wget-$(wget-version) \
+ $(ibidir)/grep-$(grep-version) \
+ $(ibidir)/file-$(file-version) \
+ $(ibidir)/gawk-$(gawk-version) \
+ $(ibidir)/which-$(which-version) \
+ $(ibidir)/libtool-$(libtool-version) \
+ $(ibidir)/metastore-$(metastore-version) \
+ $(ibidir)/findutils-$(findutils-version) \
+ $(ibidir)/diffutils-$(diffutils-version) \
+ $(ibidir)/coreutils-$(coreutils-version)
+
+ # Download the tarball.
+ tarball=binutils-$(binutils-version).tar.lz
+ $(call import-source, $(binutils-url), $(binutils-checksum))
+
+ # Binutils' assembler (`as') and linker (`ld') will conflict with
+ # other compilers. So if we don't build our own compiler, we'll use
+ # the host opertating system's equivalents by just making links.
+ if [ x$(on_mac_os) = xyes ]; then
+ $(call makelink,as)
+ $(call makelink,ar)
+ $(call makelink,ld)
+ $(call makelink,nm)
+ $(call makelink,ps)
+ $(call makelink,ranlib)
+ echo "" > $@
+ else
+
+ # Build binutils with the standard 'gbuild' function.
$(call gbuild, binutils-$(binutils-version), static, \
--with-lib-path=$(sys_library_path), \
- -j$(numthreads) ) \
- && if ! [ x"$(sys_library_path)" = x ]; then \
- for f in $(sys_library_path)/*crt*.o; do \
- b=$$($(ibdir)/basename $$f); \
- ln -s $$f $(ildir)/$$b; \
- done; \
- fi \
- && echo "GNU Binutils $(binutils-version)" > $@; \
+ -j$(numthreads) )
+
+ # The `ld' linker of Binutils needs several `*crt*.o' file to
+ # run. On some systems these object files aren't installed in
+ # standard places. We defined `LIBRARY_PATH' and that fixed the
+ # problem for many systems. However, some software (for example
+ # ImageMagick) over-write `LIBRARY_PATH', therefore there is no
+ # other way than to put a link to these necessary files in our
+ # local build directory. IMPORTANT NOTE: later, when we build the
+ # GNU C Library in the project, we should remove this step.
+ if ! [ x"$(sys_library_path)" = x ]; then
+ for f in $(sys_library_path)/*crt*.o; do
+ b=$$($(ibdir)/basename $$f)
+ ln -s $$f $(ildir)/$$b
+ done
+ fi
+
+ # Write the final target.
+ echo "GNU Binutils $(binutils-version)" > $@
fi
# We are having issues with `libiberty' (part of GCC) on Mac. So for now,
@@ -1301,117 +1244,162 @@ $(ibidir)/binutils: $(ibidir)/sed \
#
# We are currently having problems installing GCC on macOS, so for the time
# being, if the project is being run on a macOS, we'll just set a link.
-ifeq ($(host_cc),1)
-gcc-tarball =
-else
-gcc-tarball = $(tdir)/gcc-$(gcc-version).tar.xz
-endif
-$(ibidir)/gcc: $(gcc-tarball) \
- $(ibidir)/binutils
+$(ibidir)/gcc-$(gcc-version): $(ibidir)/binutils-$(binutils-version)
+
+ # Function to let the users know what to do if build fails.
+ error_message() {
+ echo; echo
+ echo "_________________________________________________"
+ echo "!!!!!!!! Warning from Maneage !!!!!!!!"
+ echo
+ echo "Unfortunately building of GCC failed on this system!"
+ echo "Can you please copy the last ~500 lines above and post it"
+ echo "as a bug here (as an attached file):"
+ echo " https://sv.nongnu.org/support/?func=additem&group=reproduce"
+ echo
+ echo "In the meantime, please re-configure Maneage with '--host-cc'"
+ echo "like below so it uses your own C compiler for building the"
+ echo "high-level software ('-e' is to use the existing configuration):"
+ echo
+ echo " ./project configure -e --host-cc"
+ echo
+ echo "__________ SEE NOTE FROM MANEAGE ABOVE __________"
+ echo; exit 1
+ }
+
+ # Download the tarball.
+ tarball=gcc-$(gcc-version).tar.xz
+ $(call import-source, $(gcc-url), $(gcc-checksum))
# GCC builds is own libraries in '$(idir)/lib64'. But all other
# libraries are in '$(idir)/lib'. Since this project is only for a
# single architecture, we can trick GCC into building its libraries
# in '$(idir)/lib' by defining the '$(idir)/lib64' as a symbolic
# link to '$(idir)/lib'.
- if [ $(host_cc) = 1 ]; then \
- $(call makelink,cc); \
- $(call makelink,cc,,gcc); \
- $(call makelink,c++,,g++); \
- $(call makelink,gfortran); \
- $(call makelink,strip,mandatory); \
- ccinfo=$$(gcc --version | awk 'NR==1'); \
- echo "C compiler (""$$ccinfo"")" > $@; \
- else \
- current_dir=$$(pwd); \
- rm -f $(ibdir)/gcc* $(ibdir)/g++ $(ibdir)/gfortran $(ibdir)/gcov*;\
- rm -rf $(ildir)/gcc $(ildir)/libcc* $(ildir)/libgcc*; \
- rm -rf $(ildir)/libgfortran* $(ildir)/libstdc* rm $(idir)/x86_64*;\
- \
- ln -fs $(ildir) $(idir)/lib64; \
- \
+ if [ $(host_cc) = 1 ]; then
+
+ # Make sure we don't have any of the program we want to link to
+ # in the '.local/bin' directory.
+ rm -f $(ibdir)/cc
+ rm -f $(ibdir)/c++
+ rm -f $(ibdir)/gcc
+ rm -f $(ibdir)/cpp
+ rm -f $(ibdir)/strip;
+ rm -f $(ibdir)/gfortran;
+
+ # Put links to the host's tools in '.local/bin'.
+ $(call makelink,cc)
+ $(call makelink,cpp)
+ $(call makelink,cc,,gcc)
+ $(call makelink,gfortran)
+ $(call makelink,c++,,g++)
+ $(call makelink,strip,mandatory)
+ ccinfo=$$(gcc --version | awk 'NR==1')
+ echo "C compiler (""$$ccinfo"")" > $@
+
+ else
+
+ # We are building GCC, so to avoid any previous build in
+ # '.local/bin', we'll delete all the files that GCC builds from
+ # there.
+ current_dir=$$(pwd)
+ rm -f $(ibdir)/gcc* $(ibdir)/g++ $(ibdir)/gfortran $(ibdir)/gcov*
+ rm -rf $(ildir)/gcc $(ildir)/libcc* $(ildir)/libgcc*
+ rm -rf $(ildir)/libgfortran* $(ildir)/libstdc* rm $(idir)/x86_64*
+
+ # We don't want '.local/lib' and '.local/lib64' to be separate.
+ ln -fs $(ildir) $(idir)/lib64
+
+ # By default we'll build GCC in the RAM to avoid building so many
+ # files and possibly harming the hard-drive or SSD. But if the
+ # RAM doesn't have enough space, we can't use it.
in_ram=$$(df $(ddir) \
| awk 'NR==2{print ($$4>10000000) ? "yes" : "no"}'); \
- if [ $$in_ram = "yes" ]; then odir=$(ddir); \
- else \
- odir=$(BDIR)/software/build-tmp-gcc; \
- if [ -d $$odir ]; then rm -rf $$odir; fi; \
- mkdir $$odir; \
- fi; \
- cd $$odir; \
- rm -rf gcc-$(gcc-version); \
- tar xf $(word 1,$(filter $(tdir)/%,$^)); \
- if [ $$odir != $(ddir) ]; then \
- ln -s $$odir/gcc-$(gcc-version) $(ddir)/gcc-$(gcc-version); \
- fi; \
- if cd gcc-$(gcc-version) \
- && mkdir build \
- && cd build \
- && ../configure SHELL=$(ibdir)/bash \
- --prefix=$(idir) \
- --with-mpc=$(idir) \
- --with-gmp=$(idir) \
- --with-isl=$(idir) \
- --with-mpfr=$(idir) \
- --with-local-prefix=$(idir) \
- --with-build-time-tools=$(idir) \
- --enable-lto \
- --enable-shared \
- --enable-cet=auto \
- --enable-default-pie \
- --enable-default-ssp \
- --enable-decimal-float \
- --enable-threads=posix \
- --enable-languages=c,c++,fortran,objc,obj-c++ \
- --disable-nls \
- --disable-libada \
- --disable-multilib \
- --disable-multiarch \
- && make SHELL=$(ibdir)/bash -j$(numthreads) \
- && make SHELL=$(ibdir)/bash install \
- && cd ../.. \
- && tempname=$$odir/gcc-$(gcc-version)/build/rpath-temp-copy \
- && if [ "x$(on_mac_os)" != xyes ]; then \
- for f in $$(find $(idir)/libexec/gcc) $(ildir)/libstdc++*; do \
- isdynamic=$$(file $$f | grep "dynamically linked"); \
- if [ x"$$isdynamic" != x ]; then \
- cp $$f $$tempname; \
- patchelf --set-rpath $(ildir) $$tempname; \
- echo "$$f: added rpath"; \
- islibcpp=$$(echo $$f | grep "libstdc++"); \
- if [ x"$$islibcpp" != x ]; then \
- patchelf --add-needed $(ildir)/libiconv.so $$tempname; \
- echo "$$f: linked with libiconv"; \
- fi; \
- mv $$tempname $$f; \
- fi; \
- done; \
- fi \
- && rm -rf gcc-$(gcc-version) \
- && cd $$current_dir \
- && if [ "$$odir" != "$(ddir)" ]; then \
- rm -rf $$odir; \
- rm $(ddir)/gcc-$(gcc-version); \
- fi \
- && ln -sf $(ibdir)/gcc $(ibdir)/cc; \
- then \
- echo "GNU Compiler Collection (GCC) $(gcc-version)" > $@; \
- else echo; echo; echo; \
- echo "_________________________________________________"; \
- echo "!!!!!!!! Warning from Maneage !!!!!!!!"; \
- echo; \
- echo "Unfortunately building of GCC failed on this system!"; \
- echo "Can you please copy the last ~500 lines above and post it"; \
- echo "as a bug here (as an attached file):"; \
- echo " https://sv.nongnu.org/support/?func=additem&group=reproduce"; \
- echo; \
- echo "In the meantime, please re-configure Maneage with '--host-cc'"; \
- echo "like below so it uses your own C compiler for building the"; \
- echo "high-level software ('-e' is to use the existing configuration):"; \
- echo; \
- echo " ./project configure -e --host-cc"; \
- echo; \
- echo "__________ SEE NOTE FROM MANEAGE ABOVE __________"; \
- echo; exit 1; \
- fi; \
+ if [ $$in_ram = "yes" ]; then odir=$(ddir)
+ else
+ odir=$(BDIR)/software/build-tmp-gcc
+ if [ -d $$odir ]; then rm -rf $$odir; fi
+ mkdir $$odir
+ fi
+
+ # Go into the proper directory, unpack GCC and prepare the
+ # 'build' directory inside it for all the built files.
+ cd $$odir
+ rm -rf gcc-$(gcc-version)
+ tar xf $(tdir)/$$tarball
+ if [ $$odir != $(ddir) ]; then
+ ln -s $$odir/gcc-$(gcc-version) $(ddir)/gcc-$(gcc-version)
+ fi
+ cd gcc-$(gcc-version)
+ mkdir build
+ cd build
+
+ # Configure, build and install GCC, if any of three steps fails,
+ # the error message will be printed.
+ if ! ../configure SHELL=$(ibdir)/bash \
+ --prefix=$(idir) \
+ --with-mpc=$(idir) \
+ --with-gmp=$(idir) \
+ --with-isl=$(idir) \
+ --with-mpfr=$(idir) \
+ --with-local-prefix=$(idir) \
+ --with-build-time-tools=$(idir) \
+ --enable-lto \
+ --enable-shared \
+ --enable-cet=auto \
+ --enable-default-pie \
+ --enable-default-ssp \
+ --enable-decimal-float \
+ --enable-threads=posix \
+ --enable-languages=c,c++,fortran,objc,obj-c++ \
+ --disable-nls \
+ --disable-libada \
+ --disable-multilib \
+ --disable-multiarch; then error_message; fi
+ if ! make SHELL=$(ibdir)/bash -j$(numthreads); then error_message; fi
+ if ! make SHELL=$(ibdir)/bash install; then error_message; fi
+
+ # We need to manually fix the RPATH inside GCC's libraries, the
+ # programs built by GCC already have RPATH.
+ tempname=$$odir/gcc-$(gcc-version)/build/rpath-temp-copy
+ if [ -f $(ibdir)/patchelf ]; then
+
+ # Go over all the installed GCC libraries (its executables are
+ # fine!).
+ for f in $$(find $(idir)/libexec/gcc -type f) $(ildir)/libstdc++*; do
+
+ # Make sure this is a static library, copy it to a temporary
+ # name (to avoid any possible usage of the file while it is
+ # being corrected), and add RPATH inside of it and put the
+ # corrected file back in its place. In the case of the
+ # standard C++ library, we also need to manually insert a
+ # linking to libiconv.
+ if file $$f | grep -q "dynamically linked"; then
+ cp $$f $$tempname
+ patchelf --set-rpath $(ildir) $$tempname
+ echo "$$f: added rpath"
+ if echo $$f | grep -q "libstdc++"; then
+ patchelf --add-needed $(ildir)/libiconv.so $$tempname
+ echo "$$f: linked with libiconv"
+ fi
+ mv $$tempname $$f
+ fi
+ done
+ fi
+
+ # Come back up to the un-packing directory and delete the GCC
+ # source directory.
+ cd ../..
+ rm -rf gcc-$(gcc-version)
+ cd $$current_dir
+ if [ "$$odir" != "$(ddir)" ]; then
+ rm -rf $$odir;
+ rm $(ddir)/gcc-$(gcc-version);
+ fi
+
+ # Set 'cc' to point to 'gcc'.
+ ln -sf $(ibdir)/gcc $(ibdir)/cc
+
+ # Write the final target.
+ echo "GNU Compiler Collection (GCC) $(gcc-version)" > $@
fi
diff --git a/reproduce/software/make/build-rules.mk b/reproduce/software/make/build-rules.mk
index 260ded8..7471e5b 100644
--- a/reproduce/software/make/build-rules.mk
+++ b/reproduce/software/make/build-rules.mk
@@ -1,7 +1,7 @@
# Generic configurable recipes to build packages with GNU Build system or
# CMake. This is Makefile is not intended to be run directly, it will be
-# imported into `basic.mk' and `high-level.mk'. They should be activated
-# with Make's `Call' function.
+# imported into 'basic.mk' and 'high-level.mk'. They should be activated
+# with Make's 'Call' function.
#
# Copyright (C) 2018-2020 Mohammad Akhlaghi <mohammad@akhlaghi.org>
#
@@ -22,31 +22,84 @@
-# IMPORTANT note
-# --------------
+# Import/download project's source
+# --------------------------------
#
-# Without using `&&', if a step fails, the process will continue. However,
-# in the `if' statements, we need `;' (particularly between `]' and
-# `then'). So we need to put any necessary checks at the start, then when
-# we start the process, every command will be separated by an `&&'.
+# Copy/Download the raw tarball into an '.unchecked' suffix. Then calculate
+# its checksum and if it is correct, remove the extra suffix.
+#
+# Arguments:
+# 1: The optional URL to use for this tarball.
+# 2: The expeced checksum of the tarball.
+#
+# Necessary shell variables
+# 'tarball': This is the name of the actual tarball file without a
+# directory.
+import-source = final=$(tdir)/$$tarball; \
+ url=$(strip $(1)); \
+ exp_checksum="$(strip $(2))"; \
+ if [ -f $$final ]; then \
+ echo "$(tdir)/$$tarball: already present in project."; \
+ else \
+ unchecked="$$final.unchecked"; \
+ rm -f "$$unchecked"; \
+ if [ -f $(DEPENDENCIES-DIR)/$$tarball ]; then \
+ cp $(DEPENDENCIES-DIR)/$$tarball "$$unchecked"; \
+ else \
+ if [ x"$$url" = x ]; then \
+ bservers="$(backupservers)"; \
+ tarballurl=$(topbackupserver)/$$tarball; \
+ else \
+ bservers="$(backupservers_all)"; \
+ tarballurl=$$url/$$tarball; \
+ fi; \
+ if [ -f $(ibdir)/wget ]; then \
+ downloader="wget --no-use-server-timestamps -O"; \
+ else \
+ downloader="$(DOWNLOADER)"; \
+ fi; \
+ touch $(lockdir)/download; \
+ $(downloadwrapper) "$$downloader" $(lockdir)/download \
+ $$tarballurl "$$unchecked" "$$bservers"; \
+ fi; \
+ if [ x"$$exp_checksum" = x"NO-CHECK-SUM" ]; then \
+ mv "$$unchecked" "$$final"; \
+ else \
+ if type sha512sum > /dev/null 2>/dev/null; then \
+ checksum=$$(sha512sum "$$unchecked" | awk '{print $$1}'); \
+ if [ x"$$checksum" = x"$$exp_checksum" ]; then \
+ mv "$$unchecked" "$$final"; \
+ else \
+ echo "ERROR: Non-matching checksum for '$$tarball'."; \
+ echo "Checksum should be: $$exp_checksum"; \
+ echo "Checksum is: $$checksum"; \
+ exit 1; \
+ fi; \
+ else mv "$$unchecked" "$$final"; \
+ fi; \
+ fi; \
+ fi
+# Unpack a tarball
+# ----------------
+#
# Unpack a tarball in the current directory. The issue is that until we
# install GNU Tar within Maneage, we have to use the host's Tar
# implementation and in some cases, they don't recognize '.lz'.
-uncompress = csuffix=$$(echo $$tarball \
+uncompress = csuffix=$$(echo $$utarball \
| sed -e's/\./ /g' \
| awk '{print $$NF}'); \
if [ x$$csuffix = xlz ]; then \
intarrm=1; \
- intar=$$(echo $$tarball | sed -e's/.lz//'); \
- lzip -c -d $$tarball > $$intar; \
+ intar=$$(echo $$utarball | sed -e's/.lz//'); \
+ lzip -c -d $$utarball > $$intar; \
else \
intarrm=0; \
- intar=$$tarball; \
+ intar=$$utarball; \
fi; \
if tar xf $$intar; then \
if [ x$$intarrm = x1 ]; then rm $$intar; fi; \
@@ -64,20 +117,20 @@ uncompress = csuffix=$$(echo $$tarball \
#
# Arguments:
# 1: Directory name after unpacking.
-# 2: Set to `static' for a static build.
+# 2: Set to 'static' for a static build.
# 3: Extra configuration options.
# 4: Extra options/arguments to pass to Make.
-# 5: Step to run between `make' and `make install': usually `make check'.
-# 6: The configuration script (`configure' by default).
-# 7: Arguments for `make install'.
+# 5: Step to run between 'make' and 'make install': usually 'make check'.
+# 6: The configuration script ('configure' by default).
+# 7: Arguments for 'make install'.
#
-# NOTE: Unfortunately the configure script of `zlib' doesn't recognize
-# `SHELL'. So we'll have to remove it from the call to the configure
+# NOTE: Unfortunately the configure script of 'zlib' doesn't recognize
+# 'SHELL'. So we'll have to remove it from the call to the configure
# script.
#
# NOTE: A program might not contain any configure script. In this case,
-# we'll just pass a non-relevant function like `pwd'. So SED should be used
-# to modify `confscript' or to set `configop'.
+# we'll just pass a non-relevant function like 'pwd'. So SED should be used
+# to modify 'confscript' or to set 'configop'.
gbuild = if [ x$(static_build) = xyes ] && [ "x$(2)" = xstatic ]; then \
export LDFLAGS="$$LDFLAGS -static"; \
fi; \
@@ -85,9 +138,8 @@ gbuild = if [ x$(static_build) = xyes ] && [ "x$(2)" = xstatic ]; then \
if [ x"$$check" = x ]; then check="echo Skipping-check"; fi; \
cd $(ddir); \
rm -rf $(1); \
- if [ x"$$gbuild_tar" = x ]; then \
- tarball=$(word 1,$(filter $(tdir)/%,$^)); \
- else tarball=$$gbuild_tar; \
+ if [ x"$$gbuild_tar" = x ]; then utarball=$(tdir)/$$tarball; \
+ else utarball=$$gbuild_tar; \
fi; \
$(call uncompress); \
cd $(1); \
@@ -95,7 +147,7 @@ gbuild = if [ x$(static_build) = xyes ] && [ "x$(2)" = xstatic ]; then \
if [ x"$(strip $(6))" = x ]; then confscript=./configure; \
else confscript="$(strip $(6))"; \
fi; \
- \
+ \
if [ -f $(ibdir)/bash ]; then \
if [ -f "$$confscript" ]; then \
sed -e's|\#\! /bin/sh|\#\! $(ibdir)/bash|' \
@@ -108,7 +160,7 @@ gbuild = if [ x$(static_build) = xyes ] && [ "x$(2)" = xstatic ]; then \
elif [ -f /bin/bash ]; then shellop="SHELL=/bin/bash"; \
else shellop="SHELL=/bin/sh"; \
fi; \
- \
+ \
if [ -f "$$confscript" ]; then \
if [ x"$(strip $(1))" = x"zlib-$(zlib-version)" ]; then \
configop="--prefix=$(idir)"; \
@@ -118,12 +170,12 @@ gbuild = if [ x$(static_build) = xyes ] && [ "x$(2)" = xstatic ]; then \
\
echo; echo "Using '$$confscript' to configure:"; echo; \
echo "$$confscript $(3) $$configop"; echo; \
- $$confscript $(3) $$configop \
- && make "$$shellop" $(4) \
- && $$check \
- && make "$$shellop" install $(7) \
- && cd .. \
- && rm -rf $(1)
+ $$confscript $(3) $$configop; \
+ make "$$shellop" $(4); \
+ $$check; \
+ make "$$shellop" install $(7); \
+ cd ..; \
+ rm -rf $(1)
@@ -131,7 +183,7 @@ gbuild = if [ x$(static_build) = xyes ] && [ "x$(2)" = xstatic ]; then \
# CMake
# -----
#
-# According to the link below, in CMake `/bin/sh' is hardcoded, so there is
+# According to the link below, in CMake '/bin/sh' is hardcoded, so there is
# no way to change it unfortunately!
#
# https://stackoverflow.com/questions/21167014/how-to-set-shell-variable-in-makefiles-generated-by-cmake
@@ -139,17 +191,18 @@ cbuild = if [ x$(static_build) = xyes ] && [ $(2)x = staticx ]; then \
export LDFLAGS="$$LDFLAGS -static"; \
opts="-DBUILD_SHARED_LIBS=OFF"; \
fi; \
- tarball=$(word 1,$(filter $(tdir)/%,$^)); \
cd $(ddir); \
rm -rf $(1); \
+ utarball=$(tdir)/$$tarball; \
$(call uncompress); \
- cd $(1) \
- && rm -rf project-build \
- && mkdir project-build \
- && cd project-build \
- && cmake .. -DCMAKE_LIBRARY_PATH=$(ildir) \
- -DCMAKE_INSTALL_PREFIX=$(idir) \
- -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON $$opts $(3) \
- && make && make install \
- && cd ../.. \
- && rm -rf $(1)
+ cd $(1); \
+ rm -rf project-build; \
+ mkdir project-build; \
+ cd project-build; \
+ cmake .. -DCMAKE_LIBRARY_PATH=$(ildir) \
+ -DCMAKE_INSTALL_PREFIX=$(idir) \
+ -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON $$opts $(3); \
+ make; \
+ make install; \
+ cd ../..; \
+ rm -rf $(1)
diff --git a/reproduce/software/make/high-level.mk b/reproduce/software/make/high-level.mk
index 75fa8ac..b756cb9 100644
--- a/reproduce/software/make/high-level.mk
+++ b/reproduce/software/make/high-level.mk
@@ -4,7 +4,11 @@
# !!!!! IMPORTANT NOTES !!!!!
#
# This Makefile will be run by the initial `./project configure' script. It
-# is not included into the reproduction pipe after that.
+# is not included into the project afterwards.
+#
+# This Makefile builds the high-level (optional) software in Maneage that
+# users can choose for different projects. It thus assumes that the
+# low-level tools (like GNU Tar and etc) are already build by 'basic.mk'.
#
# ------------------------------------------------------------------------
#
@@ -24,35 +28,82 @@
# You should have received a copy of the GNU General Public License
# along with this Makefile. If not, see <http://www.gnu.org/licenses/>.
-
-
-# Top level environment
+# Top level environment (same as 'basic.mk')
include reproduce/software/config/LOCAL.conf
include reproduce/software/make/build-rules.mk
-include reproduce/software/config/TARGETS.conf
include reproduce/software/config/versions.conf
include reproduce/software/config/checksums.conf
+
+# The optional URLs of software. Note that these may need the software
+# version, so it is important that they be loaded after 'versions.conf'.
+include reproduce/software/config/urls.conf
+
+# Configurations specific to this Makefile
+include reproduce/software/config/TARGETS.conf
include reproduce/software/config/texlive-packages.conf
+# Basic directories (similar to 'basic.mk').
lockdir = $(BDIR)/locks
tdir = $(BDIR)/software/tarballs
ddir = $(BDIR)/software/build-tmp
idir = $(BDIR)/software/installed
ibdir = $(BDIR)/software/installed/bin
ildir = $(BDIR)/software/installed/lib
-iidir = $(BDIR)/software/installed/include
-dtexdir = $(shell pwd)/reproduce/software/bibtex
-patchdir= $(shell pwd)/reproduce/software/patches
-itidir = $(BDIR)/software/installed/version-info/tex
-ictdir = $(BDIR)/software/installed/version-info/cite
-ipydir = $(BDIR)/software/installed/version-info/python
ibidir = $(BDIR)/software/installed/version-info/proglib
-# Set the top-level software to build.
-all: $(foreach p, $(top-level-programs), $(ibidir)/$(p)) \
- $(foreach p, $(top-level-python), $(ipydir)/$(p)) \
+# Basic directories (specific to this Makefile).
+iidir = $(BDIR)/software/installed/include
+shsrcdir = $(shell pwd)/reproduce/software/shell
+dtexdir = $(shell pwd)/reproduce/software/bibtex
+patchdir = $(shell pwd)/reproduce/software/patches
+itidir = $(BDIR)/software/installed/version-info/tex
+ictdir = $(BDIR)/software/installed/version-info/cite
+ipydir = $(BDIR)/software/installed/version-info/python
+
+# Targets to build.
+ifeq ($(strip $(all_highlevel)),1)
+
+ # Set it to build all programs. Pay attention to special software:
+ #
+ # Versions as variables (for example minizip): they have the same as the
+ # version as others and the version number is actually a variable. So
+ # we'll need to filter it out, then add it in the end: minizip (has same
+ # version as zlib)
+ #
+ # Packages that are installed in the same recipe as others. These need to
+ # be totally removed when testing all the builds (they will be built
+ # anyway). lapack (installed with ATLAS)
+ targets-proglib := $(filter-out minizip-% lapack-%, \
+ $(shell awk '/^# CLASS:PYTHON/{good=0} \
+ good==1 && !/^#/ && $$1 ~ /-version$$/ { \
+ printf("%s %s ", $$1, $$3)} \
+ /^# CLASS:HIGHLEVEL/{good=1}' \
+ reproduce/software/config/versions.conf \
+ | sed 's/version //g')) \
+ minizip-$(minizip-version)
+
+ # List all existing Python packages.
+ targets-python := $(shell \
+ awk '/^# CLASS:PYTHON/{good=1} \
+ good==1 && !/^#/ && $$1 ~ /-version$$/ {printf("%s %s ",$$1,$$3)}' \
+ reproduce/software/config/versions.conf | sed 's/version //g')
+else
+
+ # Append the version of each software to its name. We are using a Make
+ # feature where a variable name is defined with another variable.
+ targets-python := $(foreach p,$(top-level-python),$(p)-$($(p)-version))
+ targets-proglib := $(foreach p,$(top-level-programs),$(p)-$($(p)-version))
+
+endif
+
+# Ultimate Makefile target.
+all: $(foreach p, $(targets-proglib), $(ibidir)/$(p)) \
+ $(foreach p, $(targets-python), $(ipydir)/$(p)) \
$(itidir)/texlive
+# Define the shell environment
+# ----------------------------
+#
# Other basic environment settings: We are only including the host
# operating system's PATH environment variable (after our own!) for the
# compiler and linker. For the library binaries and headers, we are only
@@ -67,18 +118,28 @@ all: $(foreach p, $(top-level-programs), $(ibidir)/$(p)) \
#
# 2) Add `--noprofile --norc' to `.SHELLFLAGS' so doesn't load the
# user's environment.
+#
+# Shell settings similar to 'basic.mk':
.ONESHELL:
-.SHELLFLAGS := --noprofile --norc -ec
-export CCACHE_DISABLE := 1
export PATH := $(ibdir)
+export CCACHE_DISABLE := 1
+export SHELL := $(ibdir)/bash
+export CPPFLAGS := -I$(idir)/include
+.SHELLFLAGS := --noprofile --norc -ec
+export PKG_CONFIG_PATH := $(ildir)/pkgconfig
+export LDFLAGS := $(rpath_command) -L$(ildir)
+export PKG_CONFIG_LIBDIR := $(ildir)/pkgconfig
+
+# Settings specific to this Makefile.
export CC := $(ibdir)/gcc
export CXX := $(ibdir)/g++
-export SHELL := $(ibdir)/bash
export F77 := $(ibdir)/gfortran
export LD_RUN_PATH := $(ildir):$(il64dir)
-export PKG_CONFIG_PATH := $(ildir)/pkgconfig
export LD_LIBRARY_PATH := $(ildir):$(il64dir)
-export PKG_CONFIG_LIBDIR := $(ildir)/pkgconfig
+
+# Recipe startup script, see `reproduce/software/shell/bashrc.sh'.
+export PROJECT_STATUS := configure_highlevel
+export BASH_ENV := $(shell pwd)/reproduce/software/shell/bashrc.sh
# Until we build our own C library, without this, our GCC won't be able to
# compile anything! Note that on most systems (in particular
@@ -97,282 +158,45 @@ export DYLD_LIBRARY_PATH :=
# for `ld'.
export LIBRARY_PATH := $(sys_library_path)
-# Recipe startup script, see `reproduce/software/shell/bashrc.sh'.
-export PROJECT_STATUS := configure_highlevel
-export BASH_ENV := $(shell pwd)/reproduce/software/shell/bashrc.sh
-
-# Servers to use as backup, later this should go in a file that is not
-# under version control (the actual server that the tarbal comes from is
-# irrelevant).
-backupservers := $(shell awk '!/^#/{printf "%s ", $$1}' \
- reproduce/software/config/servers-backup.conf)
-
# Building flags:
#
# C++ flags: when we build GCC, the C++ standard library needs to link with
# libiconv. So it is necessary to generically include `-liconv' for all C++
# builds.
-export CPPFLAGS := -I$(idir)/include
-export LDFLAGS := $(rpath_command) -L$(ildir)
ifeq ($(host_cc),0)
export CXXFLAGS := -liconv
endif
-
-
-
-
-# We want the download to happen on a single thread. So we need to define a
-# lock, and call a special script we have written for this job. These are
-# placed here because we want them both in the `high-level.mk' and
-# `python.mk'.
-$(lockdir): | $(BDIR); mkdir $@
-downloader="wget --no-use-server-timestamps -O";
+# Servers to use as backup. Maneage already has some fixed servers that can
+# be used to download software tarballs. They are in a configuation
+# file. But we give precedence to the "user" backup servers.
+#
+# One important "user" server (which the user doesn't actually give, but is
+# found at configuration time in 'configure.sh') is Zenodo (see the
+# description in 'configure.sh' for more on why this depends on
+# configuration time).
+#
+# Afer putting everything together, we use the first server as the
+# reference for all software if their '-url' variable isn't defined (in
+# 'reproduce/software/config/urls.conf').
downloadwrapper = ./reproduce/analysis/bash/download-multi-try
+maneage_backup_urls := $(shell awk '!/^#/{printf "%s ", $$1}' \
+ reproduce/software/config/servers-backup.conf)
+backupservers_all = $(user_backup_urls) $(maneage_backup_urls)
+topbackupserver = $(word 1, $(backupservers_all))
+backupservers = $(filter-out $(topbackupserver),$(backupservers_all))
-# Mini-environment software
+# Import rules to build Python packages,
include reproduce/software/make/python.mk
-# Tarballs
-# --------
-#
-# All the necessary tarballs are defined and prepared with this rule.
-#
-# Note that we want the tarballs to follow the convention of NAME-VERSION
-# before the `tar.XX' prefix. For those programs that don't follow this
-# convention, but include the name/version in their tarball names with
-# another format, we'll do the modification before the download so the
-# downloaded file has our desired format.
-tarballs = $(foreach t, apachelog4cxx-$(apachelog4cxx-version).tar.lz \
- apr-$(apr-version).tar.gz \
- apr-util-$(apr-util-version).tar.gz \
- astrometry.net-$(astrometrynet-version).tar.gz \
- atlas-$(atlas-version).tar.bz2 \
- autoconf-$(autoconf-version).tar.lz \
- automake-$(automake-version).tar.gz \
- bison-$(bison-version).tar.xz \
- boost-$(boost-version).tar.gz \
- cairo-$(cairo-version).tar.xz \
- cdsclient-$(cdsclient-version).tar.gz \
- cfitsio-$(cfitsio-version).tar.gz \
- cmake-$(cmake-version).tar.gz \
- eigen-$(eigen-version).tar.gz \
- expat-$(expat-version).tar.lz \
- fftw-$(fftw-version).tar.gz \
- flex-$(flex-version).tar.gz \
- freetype-$(freetype-version).tar.gz \
- gdb-$(gdb-version).tar.gz \
- ghostscript-$(ghostscript-version).tar.gz \
- gnuastro-$(gnuastro-version).tar.lz \
- gsl-$(gsl-version).tar.gz \
- hdf5-$(hdf5-version).tar.gz \
- healpix-$(healpix-version).tar.gz \
- help2man-$(help2man-version).tar.xz \
- imagemagick-$(imagemagick-version).tar.xz \
- imfit-$(imfit-version).tar.gz \
- install-tl-unx.tar.gz \
- jpegsrc.$(libjpeg-version).tar.gz \
- lapack-$(lapack-version).tar.gz \
- libgit2-$(libgit2-version).tar.gz \
- libnsl-$(libnsl-version).tar.gz \
- libpng-$(libpng-version).tar.xz \
- libtirpc-$(libtirpc-version).tar.bz2 \
- missfits-$(missfits-version).tar.gz \
- netpbm-$(netpbm-version).tar.gz \
- openblas-$(openblas-version).tar.gz \
- openmpi-$(openmpi-version).tar.gz \
- openssh-$(openssh-version).tar.gz \
- patch-$(patch-version).tar.gz \
- pixman-$(pixman-version).tar.gz \
- R-$(R-version).tar.gz \
- scamp-$(scamp-version).tar.lz \
- scons-$(scons-version).tar.gz \
- sextractor-$(sextractor-version).tar.lz \
- swarp-$(swarp-version).tar.gz \
- swig-$(swig-version).tar.gz \
- rpcsvc-proto-$(rpcsvc-proto-version).tar.xz \
- tides-$(tides-version).tar.gz \
- tiff-$(libtiff-version).tar.gz \
- valgrind-$(valgrind-version).tar.bz2 \
- wcslib-$(wcslib-version).tar.bz2 \
- xlsxio-$(xlsxio-version).tar.gz \
- yaml-$(yaml-version).tar.gz \
- zlib-$(zlib-version).tar.gz \
- , $(tdir)/$(t) )
-$(tarballs): $(tdir)/%: | $(lockdir)
-
- # Remove the version numbers and suffix from the tarball name so we
- # can search more easily only with the program name. This requires
- # the first character of the version to be a digit: packages such
- # as `foo' and `foo-3' will not be distinguished, but `foo' and
- # `foo2' will be distinguished.
- @n=$$(echo $* | sed -e's/-[0-9]/ /' -e's/\./ /g' \
- | awk '{print $$1}' )
-
- # Set the top download link of the requested tarball.
- mergenames=1
- if [ $$n = apachelog4cxx ]; then c=$(apachelog4cxx-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = apr ]; then c=$(apr-checksum); w=https://www-us.apache.org/dist/apr
- elif [ $$n = apr-util ]; then c=$(apr-util-checksum); w=https://www-us.apache.org/dist/apr
- elif [ $$n = astrometry ]; then c=$(astrometrynet-checksum); w=http://astrometry.net/downloads
- elif [ $$n = atlas ]; then
- mergenames=0
- c=$(atlas-checksum)
- w=https://sourceforge.net/projects/math-atlas/files/Stable/$(atlas-version)/atlas$(atlas-version).tar.bz2/download
- elif [ $$n = autoconf ]; then c=$(autoconf-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = automake ]; then c=$(automake-checksum); w=http://ftp.gnu.org/gnu/automake
- elif [ $$n = bison ]; then c=$(bison-checksum); w=http://ftp.gnu.org/gnu/bison
- elif [ $$n = boost ]; then
- mergenames=0
- c=$(boost-checksum)
- vstr=$$(echo $(boost-version) | sed -e's/\./_/g')
- w=https://dl.bintray.com/boostorg/release/$(boost-version)/source/boost_$$vstr.tar.gz
- elif [ $$n = cairo ]; then c=$(cairo-checksum); w=https://www.cairographics.org/releases
- elif [ $$n = cdsclient ]; then c=$(cdsclient-checksum); w=http://cdsarc.u-strasbg.fr/ftp/pub/sw
- elif [ $$n = cfitsio ]; then c=$(cfitsio-checksum); w=https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c
- elif [ $$n = cmake ]; then
- mergenames=0
- c=$(cmake-checksum)
- majv=$$(echo $(cmake-version) \
- | sed -e's/\./ /' \
- | awk '{printf("%d.%d", $$1, $$2)}')
- w=https://cmake.org/files/v$$majv/cmake-$(cmake-version).tar.gz
- elif [ $$n = eigen ]; then
- mergenames=0
- c=$(eigen-checksum);
- w=http://bitbucket.org/eigen/eigen/get/$(eigen-version).tar.gz
- elif [ $$n = expat ]; then
- mergenames=0
- c=$(expat-checksum)
- vstr=$$(echo $(expat-version) | sed -e's/\./_/g')
- w=https://github.com/libexpat/libexpat/releases/download/R_$$vstr/expat-$(expat-version).tar.lz
- elif [ $$n = fftw ]; then c=$(fftw-checksum); w=ftp://ftp.fftw.org/pub/fftw
- elif [ $$n = flex ]; then c=$(flex-checksum); w=https://github.com/westes/flex/files/981163
- elif [ $$n = freetype ]; then c=$(freetype-checksum); w=https://download.savannah.gnu.org/releases/freetype
- elif [ $$n = gdb ]; then c=$(gdb-checksum); w=http://ftp.gnu.org/gnu/gdb
- elif [ $$n = ghostscript ]; then
- c=$(ghostscript-checksum)
- v=$$(echo $(ghostscript-version) | sed -e's/\.//')
- w=https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs$$v
- elif [ $$n = gnuastro ]; then c=$(gnuastro-checksum); w=http://ftp.gnu.org/gnu/gnuastro
- elif [ $$n = gsl ]; then c=$(gsl-checksum); w=http://ftp.gnu.org/gnu/gsl
- elif [ $$n = hdf5 ]; then
- mergenames=0
- c=$(hdf5-checksum)
- majorver=$$(echo $(hdf5-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}')
- w=https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$$majorver/hdf5-$(hdf5-version)/src/$*
- elif [ $$n = healpix ]; then c=$(healpix-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = help2man ]; then c=$(help2man-checksum); w=http://ftp.gnu.org/gnu/help2man
- elif [ $$n = imagemagick ]; then c=$(imagemagick-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = imfit ]; then
- mergenames=0
- c=$(imfit-checksum)
- w=http://www.mpe.mpg.de/~erwin/resources/imfit/imfit-$(imfit-version)-source.tar.gz
- elif [ $$n = install-tl-unx ]; then c=NO-CHECK-SUM; w=http://mirror.ctan.org/systems/texlive/tlnet
- elif [ $$n = jpegsrc ]; then c=$(libjpeg-checksum); w=http://ijg.org/files
- elif [ $$n = lapack ]; then c=$(lapack-checksum); w=http://www.netlib.org/lapack
- elif [ $$n = libnsl ]; then c=$(libnsl-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = libpng ]; then c=$(libpng-checksum); w=https://download.sourceforge.net/libpng
- elif [ $$n = libgit2 ]; then
- mergenames=0
- c=$(libgit2-checksum)
- w=https://github.com/libgit2/libgit2/archive/v$(libgit2-version).tar.gz
- elif [ $$n = libtirpc ]; then c=$(libtirpc-checksum); w=https://downloads.sourceforge.net/libtirpc
- elif [ $$n = missfits ]; then c=$(missfits-checksum); w=https://www.astromatic.net/download/missfits
- elif [ $$n = netpbm ]; then c=$(netpbm-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = openblas ]; then
- mergenames=0
- c=$(openblas-checksum)
- w=https://github.com/xianyi/OpenBLAS/archive/v$(openblas-version).tar.gz
- elif [ $$n = openmpi ]; then
- mergenames=0
- c=$(openmpi-checksum)
- majorver=$$(echo $(openmpi-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}')
- w=https://download.open-mpi.org/release/open-mpi/v$$majorver/$*
- elif [ $$n = openssh ]; then c=$(openssh-checksum); w=https://artfiles.org/openbsd/OpenSSH/portable
- elif [ $$n = patch ]; then c=$(patch-checksum); w=http://ftp.gnu.org/gnu/patch
- elif [ $$n = pixman ]; then c=$(pixman-checksum); w=https://www.cairographics.org/releases
- elif [ $$n = R ]; then c=$(R-checksum);
- majver=$$(echo $(R-version) | sed -e's/\./ /g' | awk '{print $$1}')
- w=https://cran.r-project.org/src/base/R-$$majver
- elif [ $$n = rpcsvc-proto ]; then c=$(rpcsvc-proto-checksum); w=https://github.com/thkukuk/rpcsvc-proto/releases/download/v$(rpcsvc-proto-version)
- elif [ $$n = scamp ]; then c=$(scamp-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = scons ]; then
- mergenames=0
- c=$(scons-checksum)
- w=https://sourceforge.net/projects/scons/files/scons/$(scons-version)/scons-$(scons-version).tar.gz/download
- elif [ $$n = sextractor ]; then c=$(sextractor-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = swarp ]; then c=$(swarp-checksum); w=https://www.astromatic.net/download/swarp
- elif [ $$n = swig ]; then c=$(swig-checksum); w=https://sourceforge.net/projects/swig/files/swig/swig-$(swig-version)
- elif [ $$n = tides ]; then c=$(tides-checksum); w=http://akhlaghi.org/maneage-software
- elif [ $$n = tiff ]; then c=$(libtiff-checksum); w=https://download.osgeo.org/libtiff
- elif [ $$n = valgrind ]; then c=$(valgrind-checksum); w=https://sourceware.org/pub/valgrind
- elif [ $$n = wcslib ]; then c=$(wcslib-checksum); w=ftp://ftp.atnf.csiro.au/pub/software/wcslib
- elif [ $$n = xlsxio ]; then
- mergenames=0
- c=$(xlsxio-checksum);
- w=https://github.com/brechtsanders/xlsxio/archive/$(xlsxio-version).tar.gz
- elif [ $$n = yaml ]; then c=$(yaml-checksum); w=pyyaml.org/download/libyaml
- elif [ $$n = zlib ]; then c=$(zlib-checksum); w=https://zlib.net
- else
- echo; echo; echo;
- echo "'$$n' not recognized as a software tarball name to download."
- echo; echo; echo;
- exit 1
- fi
-
- # Download the requested tarball. Note that some packages may not
- # follow our naming convention (where the package name is merged
- # with its version number). In such cases, `w' will be the full
- # address, not just the top directory address. But since we are
- # storing all the tarballs in one directory, we want it to have the
- # same naming convention, so we'll download it to a temporary name,
- # then rename that.
- rm -f "$@.unchecked"
- if [ -f $(DEPENDENCIES-DIR)/$* ]; then
- cp $(DEPENDENCIES-DIR)/$* "$@.unchecked"
- else
- if [ $$mergenames = 1 ]; then tarballurl=$$w/"$*"
- else tarballurl=$$w
- fi
-
- # Download using the script specially defined for this job.
- touch $(lockdir)/download
- downloader="wget --no-use-server-timestamps -O"
- $(downloadwrapper) "$$downloader" $(lockdir)/download \
- $$tarballurl "$@.unchecked" "$(backupservers)"
- fi
-
- # Make sure this is the expected tarball. Note that we now have a
- # controlled `sha512sum' build (as part of GNU Coreutils). So we
- # don't need to check its existance like `basic.mk'. But for LaTeX,
- # we need to ignore a checksum (it downloads the binaries).
- if [ x"$$c" == x"NO-CHECK-SUM" ]; then
- mv "$@.unchecked" "$@"
- else
- checksum=$$(sha512sum "$@.unchecked" | awk '{print $$1}')
- if [ x"$$checksum" = x"$$c" ]; then
- mv "$@.unchecked" "$@"
- else
- echo "ERROR: Non-matching checksum for '$*'."
- echo "Checksum should be: $$c"
- echo "Checksum is: $$checksum"
- exit 1
- fi
- fi
-
-
-
-
-
@@ -409,39 +233,50 @@ $(tarballs): $(tdir)/%: | $(lockdir)
# build it because it will complain about the version of libtool, so until
# the version 0.11.0 of log4cxx, we'll have to run `autogen.sh' on the
# unpacked source also.
-$(ibidir)/apachelog4cxx: $(ibidir)/automake \
- $(tdir)/apachelog4cxx-$(apachelog4cxx-version).tar.lz
-
+$(ibidir)/apachelog4cxx-$(apachelog4cxx-version): \
+ $(ibidir)/expat-$(expat-version) \
+ $(ibidir)/apr-util-$(apr-util-version) \
+ $(ibidir)/automake-$(automake-version)
+ tarball=apachelog4cxx-$(apachelog4cxx-version).tar.lz
+ $(call import-source, $(apachelog4cxx-url), $(apachelog4cxx-checksum))
pdir=apachelog4cxx-$(apachelog4cxx-version)
rm -rf $(ddir)/$$pdir
topdir=$(pwd)
cd $(ddir)
- tar xf $(word 1,$(filter $(tdir)/%,$^))
+ tar xf $(tdir)/$$tarball
cd $$pdir
- ./autogen.sh \
- && ./configure SHELL=$(ibdir)/bash --prefix=$(idir) \
- && make -j$(numthreads) SHELL=$(ibdir)/bash \
- && make install \
- && cd .. \
- && rm -rf $$pdir \
- && cd $$topdir \
- && echo "Apache log4cxx $(apachelog4cxx-version)" > $@
-
-$(ibidir)/apr: $(tdir)/apr-$(apr-version).tar.gz
- $(call gbuild, apr-$(apr-version), ,--disable-static) \
- && echo "Apache Portable Runtime $(apr-version)" > $@
-
-$(ibidir)/apr-util: $(ibidir)/apr \
- $(tdir)/apr-util-$(apr-util-version).tar.gz
+ ./autogen.sh
+ ./configure SHELL=$(ibdir)/bash --prefix=$(idir)
+ make -j$(numthreads) SHELL=$(ibdir)/bash
+ make install
+ cd ..
+ rm -rf $$pdir
+ cd $$topdir
+ echo "Apache log4cxx $(apachelog4cxx-version)" > $@
+
+$(ibidir)/apr-$(apr-version):
+ tarball=apr-$(apr-version).tar.gz
+ $(call import-source, $(apr-url), $(apr-checksum))
+ $(call gbuild, apr-$(apr-version), ,--disable-static)
+ echo "Apache Portable Runtime $(apr-version)" > $@
+
+$(ibidir)/apr-util-$(apr-util-version): $(ibidir)/apr-$(apr-version)
+ tarball=apr-util-$(apr-util-version).tar.gz
+ $(call import-source, $(apr-util-url), $(apr-util-checksum))
$(call gbuild, apr-util-$(apr-util-version), , \
--disable-static \
--with-apr=$(idir) \
--with-openssl=$(idir) \
- --with-crypto ) \
- && echo "Apache Portable Runtime Utility $(apr-util-version)" > $@
+ --with-crypto )
+ echo "Apache Portable Runtime Utility $(apr-util-version)" > $@
+
+$(ibidir)/atlas-$(atlas-version):
-$(ibidir)/atlas: $(tdir)/atlas-$(atlas-version).tar.bz2 \
- $(tdir)/lapack-$(lapack-version).tar.gz
+ tarball=lapack-$(lapack-version).tar.gz
+ $(call import-source, $(lapack-url), $(lapack-checksum))
+
+ tarball=atlas-$(atlas-version).tar.bz2
+ $(call import-source, $(atlas-url), $(atlas-checksum))
# Get the operating system specific features (how to get
# CPU frequency and the library suffixes). To make the steps
@@ -470,39 +305,46 @@ $(ibidir)/atlas: $(tdir)/atlas-$(atlas-version).tar.bz2 \
# See if the shared libraries should be build for a single CPU
# thread or multiple threads.
N=$$(nproc)
- srcdir=$$(pwd)/reproduce/src/make
+ srcdir=$$(pwd)/reproduce/software/make
if [ $$N = 1 ]; then
- sharedmk=$$srcdir/dependencies-atlas-single.mk
+ sharedmk=$$srcdir/atlas-single.mk
else
- sharedmk=$$srcdir/dependencies-atlas-multiple.mk
+ sharedmk=$$srcdir/atlas-multiple.mk
fi
# The linking step here doesn't recognize the `-Wl' in the
# `rpath_command'.
export LDFLAGS=-L$(ildir)
- cd $(ddir) \
- && tar xf $(tdir)/atlas-$(atlas-version).tar.bz2 \
- && cd ATLAS \
- && rm -rf build \
- && mkdir build \
- && cd build \
- && ../configure -b 64 -D c -DPentiumCPS=$$core \
+ cd $(ddir)
+ tar xf $(tdir)/atlas-$(atlas-version).tar.bz2
+ cd ATLAS
+ rm -rf build
+ mkdir build
+ cd build
+ ../configure -b 64 -D c -DPentiumCPS=$$core \
--with-netlib-lapack-tarfile=$(tdir)/lapack-$(lapack-version).tar.gz \
--cripple-atlas-performance \
-Fa alg -fPIC --shared $$clangflag \
- --prefix=$(idir) \
- && make \
- && if [ "x$(on_mac_os)" != xyes ]; then \
- cd lib && make -f $$sharedmk && cd .. \
- && for l in lib/*.$$s*; do \
- patchelf --set-rpath $(ildir) $$l; done \
- && cp -d lib/*.$$s* $(ildir) \
- && ln -fs $(ildir)/libblas.$$s $(ildir)/libblas.$$m \
- && ln -fs $(ildir)/libf77blas.$$s $(ildir)/libf77blas.$$m \
- && ln -fs $(ildir)/liblapack.$$f $(ildir)/liblapack.$$s \
- && ln -fs $(ildir)/liblapack.$$f $(ildir)/liblapack.$$m; \
- fi \
- && make install
+ --prefix=$(idir)
+
+ # Static build.
+ make
+
+ # Currently the shared libraries have problems on macOS.
+ if [ "x$(on_mac_os)" != xyes ]; then
+ cd lib
+ make -f $$sharedmk
+ cd ..
+ for l in lib/*.$$s*; do patchelf --set-rpath $(ildir) $$l; done
+ cp -d lib/*.$$s* $(ildir)
+ ln -fs $(ildir)/libblas.$$s $(ildir)/libblas.$$m
+ ln -fs $(ildir)/libf77blas.$$s $(ildir)/libf77blas.$$m
+ ln -fs $(ildir)/liblapack.$$f $(ildir)/liblapack.$$s
+ ln -fs $(ildir)/liblapack.$$f $(ildir)/liblapack.$$m
+ fi
+
+ # Install the libraries.
+ make install
# We need to check the existance of `libptlapack.a', but we can't
# do this in the `&&' steps above (it will conflict). So we'll do
@@ -521,31 +363,37 @@ $(ibidir)/atlas: $(tdir)/atlas-$(atlas-version).tar.bz2 \
fi
# Boost doesn't use the standard GNU Build System.
-$(ibidir)/boost: $(ibidir)/openmpi \
- $(ibidir)/python \
- $(tdir)/boost-$(boost-version).tar.gz
- vstr=$$(echo $(boost-version) | sed -e's/\./_/g')
- rm -rf $(ddir)/boost_$$vstr
- topdir=$(pwd); cd $(ddir);
- tar xf $(word 1,$(filter $(tdir)/%,$^)) \
- && cd boost_$$vstr \
- && ./bootstrap.sh --prefix=$(idir) --with-libraries=all \
- --with-python=python3 \
- && echo "using mpi ;" > project-config.jam \
- && ./b2 stage threading=multi link=shared --prefix=$(idir) -j$(numthreads) \
- && ./b2 install threading=multi link=shared --prefix=$(idir) -j$(numthreads) \
- && cd $$topdir \
- && rm -rf $(ddir)/boost_$$vstr \
- && echo "Boost $(boost-version)" > $@
-
-$(ibidir)/cfitsio: $(ibidir)/curl \
- $(tdir)/cfitsio-$(cfitsio-version).tar.gz
+$(ibidir)/boost-$(boost-version): \
+ $(ibidir)/python-$(python-version) \
+ $(ibidir)/openmpi-$(openmpi-version)
+ tarball=boost-$(boost-version).tar.lz
+ $(call import-source, $(boost-url), $(boost-checksum))
+ unpackdir=boost-$(boost-version)
+ rm -rf $(ddir)/$$unpackdir
+ topdir=$(pwd)
+ cd $(ddir)
+ tar xf $(tdir)/$$tarball
+ cd $$unpackdir
+ ./bootstrap.sh --prefix=$(idir) --with-libraries=all \
+ --with-python=python3
+ echo "using mpi ;" > project-config.jam
+ ./b2 stage threading=multi link=shared --prefix=$(idir) -j$(numthreads)
+ ./b2 install threading=multi link=shared --prefix=$(idir) -j$(numthreads)
+ cd $$topdir
+ rm -rf $(ddir)/$$unpackdir
+ echo "Boost $(boost-version)" > $@
+
+$(ibidir)/cfitsio-$(cfitsio-version):
+
+ # Download the tarball
+ tarball=cfitsio-$(cfitsio-version).tar.gz
+ $(call import-source, $(cfitsio-url), $(cfitsio-checksum))
# CFITSIO hard-codes '@rpath' inside the shared library on
# Mac systems. So we need to change it to our library
# installation path. It doesn't affect GNU/Linux, so we'll
# just do it in any case to keep things clean.
- topdir=$(pwd); cd $(ddir); tar xf $(word 1,$(filter $(tdir)/%,$^))
+ topdir=$(pwd); cd $(ddir); tar xf $(tdir)/$$tarball
customtar=cfitsio-$(cfitsio-version)-custom.tar.gz
cd cfitsio-$(cfitsio-version)
sed configure -e's|@rpath|$(ildir)|g' > configure_tmp
@@ -558,68 +406,82 @@ $(ibidir)/cfitsio: $(ibidir)/curl \
# Continue the standard build on the customized tarball. Note that
# with the installation of CFITSIO, `fpack' and `funpack' are not
# installed by default. Because of that, they are added explicity.
- export gbuild_tar=$$customtar
+ export gbuild_tar=$(ddir)/$$customtar
$(call gbuild, cfitsio-$(cfitsio-version), , \
--enable-sse2 --enable-reentrant \
- --with-bzip2=$(idir), , make shared fpack funpack) \
- && rm $$customtar \
- && echo "CFITSIO $(cfitsio-version)" > $@
-
-$(ibidir)/cairo: $(ibidir)/freetype \
- $(ibidir)/libpng \
- $(ibidir)/pixman \
- $(tdir)/cairo-$(cairo-version).tar.xz
+ --with-bzip2=$(idir), , make shared fpack funpack)
+ rm $$customtar
+ echo "CFITSIO $(cfitsio-version)" > $@
+
+$(ibidir)/cairo-$(cairo-version): \
+ $(ibidir)/pixman-$(pixman-version) \
+ $(ibidir)/libpng-$(libpng-version) \
+ $(ibidir)/freetype-$(freetype-version)
+ tarball=cairo-$(cairo-version).tar.xz
+ $(call import-source, $(cairo-url), $(cairo-checksum))
$(call gbuild, cairo-$(cairo-version), static, \
- --with-x=no, -j$(numthreads) V=1) \
- && echo "Cairo $(cairo-version)" > $@
+ --with-x=yes, -j$(numthreads) V=1)
+ echo "Cairo $(cairo-version)" > $@
# Eigen is just headers! So it doesn't need to be compiled. Once unpacked
# it has a checksum after `eigen-eigen', so we'll just use a `*' to choose
# the unpacked directory.
-$(ibidir)/eigen: $(tdir)/eigen-$(eigen-version).tar.gz
+$(ibidir)/eigen-$(eigen-version):
+ tarball=eigen-$(eigen-version).tar.gz
+ $(call import-source, $(eigen-url), $(eigen-checksum))
rm -rf $(ddir)/eigen-eigen-*
- topdir=$(pwd); cd $(ddir); tar xf $(word 1,$(filter $(tdir)/%,$^))
+ topdir=$(pwd); cd $(ddir); tar xf $(tdir)/$$tarball
cd eigen-eigen-*
- cp -r Eigen $(iidir)/eigen3 \
- && cd $$topdir \
- && rm -rf $(ddir)/eigen-eigen-* \
- && echo "Eigen $(eigen-version)" > $@
+ cp -r Eigen $(iidir)/eigen3
+ cd $$topdir
+ rm -rf $(ddir)/eigen-eigen-*
+ echo "Eigen $(eigen-version)" > $@
+
+$(ibidir)/expat-$(expat-version):
+ tarball=expat-$(expat-version).tar.lz
+ $(call import-source, $(expat-url), $(expat-checksum))
+ $(call gbuild, expat-$(expat-version), static)
+ echo "Expat $(expat-version)" > $@
-$(ibidir)/expat: $(tdir)/expat-$(expat-version).tar.lz
- $(call gbuild, expat-$(expat-version), static) \
- && echo "Expat $(expat-version)" > $@
+$(ibidir)/fftw-$(fftw-version):
+ # Prepare the source tarball.
+ tarball=fftw-$(fftw-version).tar.gz
+ $(call import-source, $(fftw-url), $(fftw-checksum))
-$(ibidir)/fftw: $(tdir)/fftw-$(fftw-version).tar.gz
# FFTW's single and double precission libraries must be built
# independently: for the the single-precision library, we need to
# add the `--enable-float' option. We will build this first, then
# the default double-precision library.
confop="--enable-shared --enable-threads --enable-avx --enable-sse2"
$(call gbuild, fftw-$(fftw-version), static, \
- $$confop --enable-float) \
- && $(call gbuild, fftw-$(fftw-version), static, \
- $$confop) \
- && cp $(dtexdir)/fftw.tex $(ictdir)/ \
- && echo "FFTW $(fftw-version) \citep{fftw}" > $@
-
-# Freetype is necessary to install matplotlib
-$(ibidir)/freetype: $(ibidir)/libpng \
- $(tdir)/freetype-$(freetype-version).tar.gz
- $(call gbuild, freetype-$(freetype-version), static) \
- && echo "FreeType $(freetype-version)" > $@
-
-$(ibidir)/gsl: $(tdir)/gsl-$(gsl-version).tar.gz
- $(call gbuild, gsl-$(gsl-version), static) \
- && echo "GNU Scientific Library $(gsl-version)" > $@
-
-$(ibidir)/hdf5: $(ibidir)/openmpi \
- $(tdir)/hdf5-$(hdf5-version).tar.gz
- export CC=mpicc; \
- export FC=mpif90; \
+ $$confop --enable-float)
+ $(call gbuild, fftw-$(fftw-version), static, \
+ $$confop)
+ cp $(dtexdir)/fftw.tex $(ictdir)/
+ echo "FFTW $(fftw-version) \citep{fftw}" > $@
+
+$(ibidir)/freetype-$(freetype-version): $(ibidir)/libpng-$(libpng-version)
+ tarball=freetype-$(freetype-version).tar.gz
+ $(call import-source, $(freetype-url), $(freetype-checksum))
+ $(call gbuild, freetype-$(freetype-version), static)
+ echo "FreeType $(freetype-version)" > $@
+
+$(ibidir)/gsl-$(gsl-version):
+ tarball=gsl-$(gsl-version).tar.gz
+ $(call import-source, $(gsl-url), $(gsl-checksum))
+ $(call gbuild, gsl-$(gsl-version), static)
+ echo "GNU Scientific Library $(gsl-version)" > $@
+
+$(ibidir)/hdf5-$(hdf5-version): $(ibidir)/openmpi-$(openmpi-version)
+ export CC=mpicc
+ export FC=mpif90
+ tarball=hdf5-$(hdf5-version).tar.gz
+ $(call import-source, $(hdf5-url), $(hdf5-checksum))
$(call gbuild, hdf5-$(hdf5-version), static, \
--enable-parallel \
- --enable-fortran, -j$(numthreads) V=1) \
- && echo "HDF5 library $(hdf5-version)" > $@
+ --enable-fortran, \
+ -j$(numthreads) V=1)
+ echo "HDF5 library $(hdf5-version)" > $@
# HEALPix includes the source of its C, C++, Python (and several other
# languages) libraries within one tarball. We will include the Python
@@ -634,13 +496,15 @@ $(ibidir)/hdf5: $(ibidir)/openmpi \
ifeq ($(strip $(top-level-python)),)
healpix-python-dep =
else
-healpix-python-dep = $(ipydir)/matplotlib $(ipydir)/astropy
+healpix-python-dep = $(ipydir)/matplotlib-$(matplotlib-version) \
+ $(ipydir)/astropy-$(astropy-version)
endif
-$(ibidir)/healpix: $(ibidir)/cfitsio \
- $(ibidir)/autoconf \
- $(ibidir)/automake \
- $(healpix-python-dep) \
- $(tdir)/healpix-$(healpix-version).tar.gz
+$(ibidir)/healpix-$(healpix-version): $(healpix-python-dep) \
+ $(ibidir)/cfitsio-$(cfitsio-version) \
+ $(ibidir)/autoconf-$(autoconf-version) \
+ $(ibidir)/automake-$(automake-version)
+ tarball=healpix-$(healpix-version).tar.gz
+ $(call import-source, $(healpix-url), $(healpix-checksum))
if [ x"$(healpix-python-dep)" = x ]; then
pycommand1="echo no-healpy-because-no-other-python"
pycommand2="echo no-healpy-because-no-other-python"
@@ -650,130 +514,194 @@ $(ibidir)/healpix: $(ibidir)/cfitsio \
fi
rm -rf $(ddir)/Healpix_$(healpix-version)
topdir=$(pwd); cd $(ddir);
- tar xf $(word 1,$(filter $(tdir)/%,$^))
- && cd Healpix_$(healpix-version)/src/C/autotools/ \
- && autoreconf --install \
- && ./configure --prefix=$(idir) \
- && make V=1 -j$(numthreads) SHELL=$(ibdir)/bash \
- && make install \
- && cd ../../cxx/autotools/ \
- && autoreconf --install \
- && ./configure --prefix=$(idir) \
- && make V=1 -j$(numthreads) SHELL=$(ibdir)/bash \
- && make install \
- && cd ../../healpy \
- && $$pycommand1 \
- && $$pycommand2 \
- && cd $$topdir \
- && rm -rf $(ddir)/Healpix_$(healpix-version) \
- && cp $(dtexdir)/healpix.tex $(ictdir)/ \
- && echo "HEALPix $(healpix-version) \citep{healpix}" > $@
-
-$(ibidir)/libjpeg: $(tdir)/jpegsrc.$(libjpeg-version).tar.gz
- $(call gbuild, jpeg-9b, static,,V=1) \
- && echo "Libjpeg $(libjpeg-version)" > $@
-
-$(ibidir)/libnsl: $(ibidir)/libtirpc \
- $(ibidir)/rpcsvc-proto \
- $(tdir)/libnsl-$(libnsl-version).tar.gz
+ tar xf $(tdir)/$$tarball
+ cd Healpix_$(healpix-version)/src/C/autotools/
+ autoreconf --install
+ ./configure --prefix=$(idir)
+ make V=1 -j$(numthreads) SHELL=$(ibdir)/bash
+ make install
+ cd ../../cxx/autotools/
+ autoreconf --install
+ ./configure --prefix=$(idir)
+ make V=1 -j$(numthreads) SHELL=$(ibdir)/bash
+ make install
+ cd ../../healpy
+ $$pycommand1
+ $$pycommand2
+ cd $$topdir
+ rm -rf $(ddir)/Healpix_$(healpix-version)
+ cp $(dtexdir)/healpix.tex $(ictdir)/
+ echo "HEALPix $(healpix-version) \citep{healpix}" > $@
+
+$(ibidir)/libjpeg-$(libjpeg-version):
+ tarball=jpegsrc.$(libjpeg-version).tar.gz
+ $(call import-source, $(libjpeg-url), $(libjpeg-checksum))
+ $(call gbuild, jpeg-9b, static,,V=1)
+ echo "Libjpeg $(libjpeg-version)" > $@
+
+$(ibidir)/libnsl-$(libnsl-version): \
+ $(ibidir)/libtirpc-$(libtirpc-version) \
+ $(ibidir)/rpcsvc-proto-$(rpcsvc-proto-version)
+ tarball=libnsl-$(libnsl-version).tar.gz
+ $(call import-source, $(libnsl-url), $(libnsl-checksum))
$(call gbuild, libnsl-$(libnsl-version), static, \
- --sysconfdir=$(idir)/etc) \
- && echo "Libnsl $(libnsl-version)" > $@
+ --sysconfdir=$(idir)/etc)
+ echo "Libnsl $(libnsl-version)" > $@
+
+$(ibidir)/libpaper-$(libpaper-version): \
+ $(ibidir)/automake-$(automake-version)
-$(ibidir)/libpng: $(tdir)/libpng-$(libpng-version).tar.xz
- $(call gbuild, libpng-$(libpng-version), static) \
- && echo "Libpng $(libpng-version)" > $@
+ # Download the tarball.
+ tarball=libpaper-$(libpaper-version).tar.gz
+ $(call import-source, $(libpaper-url), $(libpaper-checksum))
-$(ibidir)/libtiff: $(ibidir)/libjpeg \
- $(tdir)/tiff-$(libtiff-version).tar.gz
+ # Unpack, build the configure system, build and install.
+ cd $(ddir)
+ tar -xf $(tdir)/$$tarball
+ unpackdir=libpaper-$(libpaper-version)
+ cd $$unpackdir
+ autoreconf -fi
+ ./configure --prefix=$(idir) --sysconfdir=$(idir)/etc \
+ --disable-static
+ make
+ make install
+ cd ..
+ rm -rf $$unpackdir
+
+ # Post-processing: according to Linux From Scratch, libpaper
+ # expects that packages will install files into this directory and
+ # 'paperconfig' is a script which will invoke 'run-parts' if
+ # '/etc/libpaper.d' exists
+ mkdir -vp $(idir)/etc/libpaper.d
+ sed -e's|MANEAGESHELL|$(SHELL)|' $(shsrcdir)/run-parts.in \
+ > $(ibdir)/run-parts
+ chmod +x $(ibdir)/run-parts
+ echo "Libpaper $(libpaper-version)" > $@
+
+$(ibidir)/libpng-$(libpng-version):
+ tarball=libpng-$(libpng-version).tar.xz
+ $(call import-source, $(libpng-url), $(libpng-checksum))
+ $(call gbuild, libpng-$(libpng-version), static)
+ echo "Libpng $(libpng-version)" > $@
+
+$(ibidir)/libtiff-$(libtiff-version): $(ibidir)/libjpeg-$(libjpeg-version)
+ tarball=tiff-$(libtiff-version).tar.gz
+ $(call import-source, $(libtiff-url), $(libtiff-checksum))
$(call gbuild, tiff-$(libtiff-version), static, \
--disable-jbig \
--disable-webp \
- --disable-zstd) \
- && echo "Libtiff $(libtiff-version)" > $@
+ --disable-zstd)
+ echo "Libtiff $(libtiff-version)" > $@
-$(ibidir)/libtirpc: $(tdir)/libtirpc-$(libtirpc-version).tar.bz2
+$(ibidir)/libtirpc-$(libtirpc-version):
+ tarball=libtirpc-$(libtirpc-version).tar.bz2
+ $(call import-source, $(libtirpc-url), $(libtirpc-checksum))
$(call gbuild, libtirpc-$(libtirpc-version), static, \
- --disable-gssapi, V=1) \
+ --disable-gssapi, V=1)
echo "libtirpc $(libtirpc-version)" > $@
-$(ibidir)/openblas: $(tdir)/openblas-$(openblas-version).tar.gz
- if [ x$(on_mac_os) = xyes ]; then \
- export CC=clang; \
- fi; \
- cd $(ddir) \
- && tar xf $(word 1,$(filter $(tdir)/%,$^)) \
- && cd OpenBLAS-$(openblas-version) \
- && make \
- && make PREFIX=$(idir) install \
- && cd .. \
- && rm -rf OpenBLAS-$(openblas-version) \
- && echo "OpenBLAS $(openblas-version)" > $@
-
-$(ibidir)/openmpi: $(tdir)/openmpi-$(openmpi-version).tar.gz
+$(ibidir)/openblas-$(openblas-version):
+ tarball=OpenBLAS-$(openblas-version).tar.gz
+ $(call import-source, $(openblas-url), $(openblas-checksum))
+ if [ x$(on_mac_os) = xyes ]; then export CC=clang; fi
+ cd $(ddir)
+ tar xf $(tdir)/$$tarball
+ cd OpenBLAS-$(openblas-version)
+ make -j$(numthreads)
+ make PREFIX=$(idir) install
+ cd ..
+ rm -rf OpenBLAS-$(openblas-version)
+ echo "OpenBLAS $(openblas-version)" > $@
+
+$(ibidir)/openmpi-$(openmpi-version):
+ tarball=openmpi-$(openmpi-version).tar.gz
+ $(call import-source, $(openmpi-url), $(openmpi-checksum))
$(call gbuild, openmpi-$(openmpi-version), static, , \
- -j$(numthreads) V=1) \
- && echo "Open MPI $(openmpi-version)" > $@
+ -j$(numthreads) V=1)
+ echo "Open MPI $(openmpi-version)" > $@
# IMPORTANT NOTE: The build instructions for OpenSSH are defined here, but
# it is best that it not be prerequisite of any program and thus not built
# within the project because of all the security issues it may cause. Only
# enable/build it in a project with caution, and if there is no other
# solution (for example to disable SSH in a program that may ask for it.
-$(ibidir)/openssh: $(tdir)/openssh-$(openssh-version).tar.gz
+$(ibidir)/openssh-$(openssh-version):
+ tarball=openssh-$(openssh-version).tar.gz
+ $(call import-source, $(openssh-url), $(openssh-checksum))
$(call gbuild, openssh-$(openssh-version), static, \
--with-privsep-path=$(ibdir)/.ssh_privsep \
--with-privsep-user=nobody \
--with-md5-passwords \
--with-ssl-engine \
- , -j$(numthreads) V=1) \
- && echo "OpenSSH $(openssh-version)" > $@
+ , -j$(numthreads) V=1)
+ echo "OpenSSH $(openssh-version)" > $@
-$(ibidir)/pixman: $(tdir)/pixman-$(pixman-version).tar.gz
+$(ibidir)/pixman-$(pixman-version):
+ tarball=pixman-$(pixman-version).tar.gz
+ $(call import-source, $(pixman-url), $(pixman-checksum))
$(call gbuild, pixman-$(pixman-version), static, , \
- -j$(numthreads) V=1) \
- && echo "Pixman $(pixman-version)" > $@
+ -j$(numthreads) V=1)
+ echo "Pixman $(pixman-version)" > $@
-$(ibidir)/rpcsvc-proto: $(tdir)/rpcsvc-proto-$(rpcsvc-proto-version).tar.xz
- $(call gbuild, rpcsvc-proto-$(rpcsvc-proto-version), static) \
- && echo "rpcsvc $(rpcsvc-proto-version)" > $@
+$(ibidir)/rpcsvc-proto-$(rpcsvc-proto-version):
+ # 'libintl' is installed as part of GNU Gettext in
+ # 'basic.mk'. rpcsvc-proto needs to link with it on macOS.
+ if [ x$(on_mac_os) = xyes ]; then
+ export CC=clang
+ export CXX=clang++
+ export LDFLAGS="-lintl $$LDFLAGS"
+ fi
-$(ibidir)/tides: $(tdir)/tides-$(tides-version).tar.gz
+ # Download the tarball and build rpcsvc-proto.
+ tarball=rpcsvc-proto-$(rpcsvc-proto-version).tar.xz
+ $(call import-source, $(rpcsvc-proto-url), $(rpcsvc-proto-checksum))
+ $(call gbuild, rpcsvc-proto-$(rpcsvc-proto-version), static)
+ echo "rpcsvc $(rpcsvc-proto-version)" > $@
+
+$(ibidir)/tides-$(tides-version):
+ tarball=tides-$(tides-version).tar.gz
+ $(call import-source, $(tides-url), $(tides-checksum))
$(call gbuild, tides-$(tides-version), static,\
- --with-gmp=$(idir) --with-mpfr=$(idir)) \
- && cp $(dtexdir)/tides.tex $(ictdir)/ \
- && echo "TIDES $(tides-version) \citep{tides}" > $@
-
-$(ibidir)/valgrind: $(ibidir)/patch \
- $(ibidir)/autoconf \
- $(ibidir)/automake \
- $(tdir)/valgrind-$(valgrind-version).tar.bz2
+ --with-gmp=$(idir) --with-mpfr=$(idir))
+ cp $(dtexdir)/tides.tex $(ictdir)/
+ echo "TIDES $(tides-version) \citep{tides}" > $@
+
+$(ibidir)/valgrind-$(valgrind-version): \
+ $(ibidir)/patch-$(patch-version) \
+ $(ibidir)/autoconf-$(autoconf-version) \
+ $(ibidir)/automake-$(automake-version)
+ # Import the tarball
+ tarball=valgrind-$(valgrind-version).tar.bz2
+ $(call import-source, $(valgrind-url), $(valgrind-checksum))
+
# For valgrind-3.15.0, see
# https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=946329 for a
# report on an MPI-related compile bug and the two patches
# below. These two patches and `automake` should allow valgrind to
# compile with gcc-9.2.0.
- cd $(ddir) \
- && tar -x -f $(word 1,$(filter $(tdir)/%,$^)) \
- && valgrinddir=valgrind-$(valgrind-version) \
- && cd $${valgrinddir} \
- && printf "valgrindir=$${valgrinddir} ; pwd = %s .\n" $$($(ibdir)/pwd) \
- && if [ "x$(valgrind-version)" = "x3.15.0" ]; then \
- patch --verbose -p1 < $(patchdir)/valgrind-3.15.0-mpi-fix1.patch; \
- patch --verbose -p1 < $(patchdir)/valgrind-3.15.0-mpi-fix2.patch; \
- fi \
- && autoreconf \
- && ./configure --prefix=$(idir) \
- && make -j$(numthreads) \
- && if ! make check -j$(numthreads); then \
- echo; echo "Valgrind's 'make check' failed!"; echo; \
- fi \
- && make install \
- && echo "Valgrind $(valgrind-version)" > $@
+ cd $(ddir)
+ tar -xf $(tdir)/$$tarball
+ valgrinddir=valgrind-$(valgrind-version)
+ cd $${valgrinddir}
+ printf "valgrindir=$${valgrinddir} ; pwd = %s .\n" $$($(ibdir)/pwd)
+ if [ "x$(valgrind-version)" = "x3.15.0" ]; then
+ patch --verbose -p1 < $(patchdir)/valgrind-3.15.0-mpi-fix1.patch
+ patch --verbose -p1 < $(patchdir)/valgrind-3.15.0-mpi-fix2.patch
+ fi
+ autoreconf
+ ./configure --prefix=$(idir)
+ make -j$(numthreads)
+ if ! make check -j$(numthreads); then
+ echo; echo "Valgrind's 'make check' failed!"; echo
+ fi
+ make install
+ echo "Valgrind $(valgrind-version)" > $@
-$(ibidir)/yaml: $(tdir)/yaml-$(yaml-version).tar.gz
- $(call gbuild, yaml-$(yaml-version), static) \
- && echo "LibYAML $(yaml-version)" > $@
+$(ibidir)/yaml-$(yaml-version):
+ tarball=yaml-$(yaml-version).tar.gz
+ $(call import-source, $(yaml-url), $(yaml-checksum))
+ $(call gbuild, yaml-$(yaml-version), static)
+ echo "LibYAML $(yaml-version)" > $@
@@ -800,20 +728,23 @@ $(ibidir)/yaml: $(tdir)/yaml-$(yaml-version).tar.gz
# functions! But apparently `libgit2' has its own implementation of libiconv
# that it uses if it can't find libiconv on macOS. So, to fix this problem
# it is necessary to use the option `-DUSE_ICONV=OFF` in the configure step.
-$(ibidir)/libgit2: $(ibidir)/curl \
- $(ibidir)/cmake \
- $(tdir)/libgit2-$(libgit2-version).tar.gz
+$(ibidir)/libgit2-$(libgit2-version): $(ibidir)/cmake-$(cmake-version)
+ tarball=libgit2-$(libgit2-version).tar.gz
+ $(call import-source, $(libgit2-url), $(libgit2-checksum))
$(call cbuild, libgit2-$(libgit2-version), static, \
-DUSE_SSH=OFF -DBUILD_CLAR=OFF \
- -DTHREADSAFE=ON -DUSE_ICONV=OFF ) \
- && if [ x$(on_mac_os) = xyes ]; then \
- install_name_tool -id $(ildir)/libgit2.28.dylib \
- $(ildir)/libgit2.28.dylib; \
- fi \
- && echo "Libgit2 $(libgit2-version)" > $@
-
-$(ibidir)/wcslib: $(ibidir)/cfitsio \
- $(tdir)/wcslib-$(wcslib-version).tar.bz2
+ -DTHREADSAFE=ON -DUSE_ICONV=OFF )
+ if [ x$(on_mac_os) = xyes ]; then
+ install_name_tool -id $(ildir)/libgit2.28.dylib \
+ $(ildir)/libgit2.28.dylib
+ fi
+ echo "Libgit2 $(libgit2-version)" > $@
+
+$(ibidir)/wcslib-$(wcslib-version): $(ibidir)/cfitsio-$(cfitsio-version)
+ # Import the tarball.
+ tarball=wcslib-$(wcslib-version).tar.bz2
+ $(call import-source, $(wcslib-url), $(wcslib-checksum))
+
# If Fortran isn't present, don't build WCSLIB with it.
if type gfortran &> /dev/null; then fortranopt="";
else fortranopt="--disable-fortran"
@@ -824,12 +755,12 @@ $(ibidir)/wcslib: $(ibidir)/cfitsio \
LIBS="-pthread -lcurl -lm" \
--with-cfitsiolib=$(ildir) \
--with-cfitsioinc=$(idir)/include \
- --without-pgplot $$fortranopt) \
- && if [ x$(on_mac_os) = xyes ]; then \
- install_name_tool -id $(ildir)/libwcs.6.4.dylib \
- $(ildir)/libwcs.6.4.dylib; \
- fi \
- && echo "WCSLIB $(wcslib-version)" > $@
+ --without-pgplot $$fortranopt)
+ if [ x$(on_mac_os) = xyes ]; then
+ install_name_tool -id $(ildir)/libwcs.6.4.dylib \
+ $(ildir)/libwcs.6.4.dylib
+ fi
+ echo "WCSLIB $(wcslib-version)" > $@
@@ -846,51 +777,58 @@ $(ibidir)/wcslib: $(ibidir)/cfitsio \
# Astrometry-net contains a lot of programs. We need to specify the
# installation directory and the Python executable (by default it will look
# for /usr/bin/python)
-$(ibidir)/astrometrynet: $(ibidir)/gsl \
- $(ibidir)/swig \
- $(ipydir)/numpy \
- $(ibidir)/cairo \
- $(ibidir)/libpng \
- $(ibidir)/netpbm \
- $(ibidir)/wcslib \
- $(ibidir)/cfitsio \
- $(ibidir)/libjpeg \
- $(tdir)/astrometry.net-$(astrometrynet-version).tar.gz
+$(ibidir)/astrometrynet-$(astrometrynet-version): \
+ $(ibidir)/gsl-$(gsl-version) \
+ $(ibidir)/swig-$(swig-version) \
+ $(ipydir)/numpy-$(numpy-version) \
+ $(ibidir)/cairo-$(cairo-version) \
+ $(ibidir)/libpng-$(libpng-version) \
+ $(ibidir)/netpbm-$(netpbm-version) \
+ $(ibidir)/wcslib-$(wcslib-version) \
+ $(ibidir)/cfitsio-$(cfitsio-version) \
+ $(ibidir)/libjpeg-$(libjpeg-version)
+
+ # Import the tarball
+ tarball=astrometry.net-$(astrometrynet-version).tar.gz
+ $(call import-source, $(astrometrynet-url), $(astrometrynet-checksum))
+
# We are modifying the Makefile in two steps because on Mac OS
# system we do not have `/proc/cpuinfo' nor `free'. Since this is
# only for the `report.txt', this changes do not causes problems in
# running `astrometrynet'
- cd $(ddir) \
- && rm -rf astrometry.net-$(astrometrynet-version) \
- && if ! tar xf $(word 1,$(filter $(tdir)/%,$^)); then \
- echo; echo "Tar error"; exit 1; \
- fi \
- && cd astrometry.net-$(astrometrynet-version) \
- && sed -e 's|cat /proc/cpuinfo|echo "Ignoring CPU info"|' \
- -e 's|-free|echo "Ignoring RAM info"|' Makefile > Makefile.tmp \
- && mv Makefile.tmp Makefile \
- && make \
- && make py \
- && make extra \
- && make install INSTALL_DIR=$(idir) PYTHON_SCRIPT="$(ibdir)/python" \
- && cd .. \
- && rm -rf astrometry.net-$(astrometrynet-version) \
- && cp $(dtexdir)/astrometrynet.tex $(ictdir)/ \
- && echo "Astrometry.net $(astrometrynet-version) \citep{astrometrynet}" > $@
-
-$(ibidir)/autoconf: $(tdir)/autoconf-$(autoconf-version).tar.lz
- $(call gbuild, autoconf-$(autoconf-version), static, ,V=1) \
- && echo "GNU Autoconf $(autoconf-version)" > $@
-
-$(ibidir)/automake: $(ibidir)/autoconf \
- $(tdir)/automake-$(automake-version).tar.gz
- $(call gbuild, automake-$(automake-version), static, ,V=1) \
- && echo "GNU Automake $(automake-version)" > $@
-
-$(ibidir)/bison: $(ibidir)/help2man \
- $(tdir)/bison-$(bison-version).tar.xz
- $(call gbuild, bison-$(bison-version), static, ,V=1) \
- && echo "GNU Bison $(bison-version)" > $@
+ cd $(ddir)
+ rm -rf astrometry.net-$(astrometrynet-version)
+ tar xf $(tdir)/$$tarball
+ cd astrometry.net-$(astrometrynet-version)
+ sed -e 's|cat /proc/cpuinfo|echo "Ignoring CPU info"|' \
+ -e 's|-free|echo "Ignoring RAM info"|' Makefile > Makefile.tmp
+ mv Makefile.tmp Makefile
+ make
+ make py
+ make extra
+ make install INSTALL_DIR=$(idir) PYTHON_SCRIPT="$(ibdir)/python"
+ cd ..
+ rm -rf astrometry.net-$(astrometrynet-version)
+ cp $(dtexdir)/astrometrynet.tex $(ictdir)/
+ echo "Astrometry.net $(astrometrynet-version) \citep{astrometrynet}" > $@
+
+$(ibidir)/autoconf-$(autoconf-version):
+ tarball=autoconf-$(autoconf-version).tar.lz
+ $(call import-source, $(autoconf-url), $(autoconf-checksum))
+ $(call gbuild, autoconf-$(autoconf-version), static, ,V=1)
+ echo "GNU Autoconf $(autoconf-version)" > $@
+
+$(ibidir)/automake-$(automake-version): $(ibidir)/autoconf-$(autoconf-version)
+ tarball=automake-$(automake-version).tar.gz
+ $(call import-source, $(automake-url), $(automake-checksum))
+ $(call gbuild, automake-$(automake-version), static, ,V=1)
+ echo "GNU Automake $(automake-version)" > $@
+
+$(ibidir)/bison-$(bison-version): $(ibidir)/help2man-$(help2man-version)
+ tarball=bison-$(bison-version).tar.xz
+ $(call import-source, $(bison-url), $(bison-checksum))
+ $(call gbuild, bison-$(bison-version), static, ,V=1 -j$(numthreads))
+ echo "GNU Bison $(bison-version)" > $@
# cdsclient is a set of software written in c to interact with astronomical
# database servers. It is a dependency of `scamp' to be able to download
@@ -899,57 +837,69 @@ $(ibidir)/bison: $(ibidir)/help2man \
# programs are scripts and we need to touch them before installing.
# Otherwise this software will be re-built each time the configure step is
# invoked.
-$(ibidir)/cdsclient: $(tdir)/cdsclient-$(cdsclient-version).tar.gz
- cd $(ddir) \
- && tar xf $(word 1,$(filter $(tdir)/%,$^)) \
- && cd cdsclient-$(cdsclient-version) \
- && touch * \
- && ./configure --prefix=$(idir) \
- && make \
- && make install \
- && cd .. \
- && rm -rf cdsclient-$(cdsclient-version) \
- && echo "cdsclient $(cdsclient-version)" > $@
+$(ibidir)/cdsclient-$(cdsclient-version):
+ tarball=cdsclient-$(cdsclient-version).tar.gz
+ $(call import-source, $(cdsclient-url), $(cdsclient-checksum))
+ cd $(ddir)
+ tar xf $(tdir)/$$tarball
+ cd cdsclient-$(cdsclient-version)
+ touch *
+ ./configure --prefix=$(idir)
+ make
+ make install
+ cd ..
+ rm -rf cdsclient-$(cdsclient-version)
+ echo "cdsclient $(cdsclient-version)" > $@
# CMake can be built with its custom `./bootstrap' script.
-$(ibidir)/cmake: $(ibidir)/curl \
- $(tdir)/cmake-$(cmake-version).tar.gz
+$(ibidir)/cmake-$(cmake-version): $(ibidir)/curl-$(curl-version)
+ # Import the tarball
+ tarball=cmake-$(cmake-version).tar.gz
+ $(call import-source, $(cmake-url), $(cmake-checksum))
+
# After searching in `bootstrap', I couldn't find `LIBS', only
# `LDFLAGS'. So the extra libraries are being added to `LDFLAGS',
# not `LIBS'.
#
# On Mac systems, the build complains about `clang' specific
# features, so we can't use our own GCC build here.
- if [ x$(on_mac_os) = xyes ]; then \
- export CC=clang; \
- export CXX=clang++; \
- fi; \
- cd $(ddir) \
- && rm -rf cmake-$(cmake-version) \
- && tar xf $(word 1,$(filter $(tdir)/%,$^)) \
- && cd cmake-$(cmake-version) \
- && ./bootstrap --prefix=$(idir) --system-curl --system-zlib \
- --system-bzip2 --system-liblzma --no-qt-gui \
- --parallel=$(numthreads) \
- && make -j$(numthreads) LIBS="$$LIBS -lssl -lcrypto -lz" VERBOSE=1 \
- && make install \
- && cd .. \
- && rm -rf cmake-$(cmake-version) \
- && echo "CMake $(cmake-version)" > $@
-
-$(ibidir)/flex: $(ibidir)/bison \
- $(tdir)/flex-$(flex-version).tar.gz
- $(call gbuild, flex-$(flex-version), static, ,V=1) \
- && echo "Flex $(flex-version)" > $@
-
-$(ibidir)/gdb: $(ibidir)/python \
- $(tdir)/gdb-$(gdb-version).tar.gz
- $(call gbuild, gdb-$(gdb-version),,,V=1) \
- && echo "GNU Project Debugger (GDB) $(gdb-version)" > $@
-
-$(ibidir)/ghostscript: $(ibidir)/libpng \
- $(ibidir)/libtiff \
- $(tdir)/ghostscript-$(ghostscript-version).tar.gz
+ if [ x$(on_mac_os) = xyes ]; then
+ export CC=clang
+ export CXX=clang++
+ fi
+ cd $(ddir)
+ rm -rf cmake-$(cmake-version)
+ tar xf $(tdir)/$$tarball
+ cd cmake-$(cmake-version)
+ ./bootstrap --prefix=$(idir) --system-curl --system-zlib \
+ --system-bzip2 --system-liblzma --no-qt-gui \
+ --parallel=$(numthreads)
+ make -j$(numthreads) LIBS="$$LIBS -lssl -lcrypto -lz" VERBOSE=1
+ make install
+ cd ..
+ rm -rf cmake-$(cmake-version)
+ echo "CMake $(cmake-version)" > $@
+
+$(ibidir)/flex-$(flex-version): $(ibidir)/bison-$(bison-version)
+ tarball=flex-$(flex-version).tar.lz
+ $(call import-source, $(flex-url), $(flex-checksum))
+ $(call gbuild, flex-$(flex-version), static, ,V=1 -j$(numthreads))
+ echo "Flex $(flex-version)" > $@
+
+$(ibidir)/gdb-$(gdb-version): $(ibidir)/python-$(python-version)
+ tarball=gdb-$(gdb-version).tar.gz
+ $(call import-source, $(gdb-url), $(gdb-checksum))
+ $(call gbuild, gdb-$(gdb-version),,,V=1 -j$(numthreads))
+ echo "GNU Project Debugger (GDB) $(gdb-version)" > $@
+
+$(ibidir)/ghostscript-$(ghostscript-version): \
+ $(ibidir)/libpng-$(libpng-version) \
+ $(ibidir)/libtiff-$(libtiff-version)
+
+ # Import the tarball.
+ tarball=ghostscript-$(ghostscript-version).tar.gz
+ $(call import-source, $(ghostscript-url), $(ghostscript-checksum))
+
# First we need to make sure some necessary X11 libraries that we
# don't yet install in this template are present on the host
# system, see https://savannah.nongnu.org/task/?15481 .
@@ -986,35 +936,38 @@ $(ibidir)/ghostscript: $(ibidir)/libpng \
fi
# If they were present, go onto building Ghostscript.
- $(call gbuild, ghostscript-$(ghostscript-version)) \
- && echo "GPL Ghostscript $(ghostscript-version)" > $@
-
-$(ibidir)/gnuastro: $(ibidir)/gsl \
- $(ibidir)/wcslib \
- $(ibidir)/libjpeg \
- $(ibidir)/libtiff \
- $(ibidir)/libgit2 \
- $(ibidir)/ghostscript \
- $(tdir)/gnuastro-$(gnuastro-version).tar.lz
-ifeq ($(static_build),yes)
- staticopts="--enable-static=yes --enable-shared=no";
-endif
- $(call gbuild, gnuastro-$(gnuastro-version), static, \
- $$staticopts, -j$(numthreads)) \
- && cp $(dtexdir)/gnuastro.tex $(ictdir)/ \
- && echo "GNU Astronomy Utilities $(gnuastro-version) \citep{gnuastro}" > $@
-
-$(ibidir)/help2man: $(tdir)/help2man-$(help2man-version).tar.xz
- $(call gbuild, help2man-$(help2man-version), static, ,V=1) \
- && echo "Help2man $(Help2man-version)" > $@
-
-$(ibidir)/imagemagick: $(ibidir)/zlib \
- $(ibidir)/libjpeg \
- $(ibidir)/libtiff \
- $(tdir)/imagemagick-$(imagemagick-version).tar.xz
+ $(call gbuild, ghostscript-$(ghostscript-version),,,V=1 -j$(numthreads))
+ echo "GPL Ghostscript $(ghostscript-version)" > $@
+
+$(ibidir)/gnuastro-$(gnuastro-version): \
+ $(ibidir)/gsl-$(gsl-version) \
+ $(ibidir)/wcslib-$(wcslib-version) \
+ $(ibidir)/libjpeg-$(libjpeg-version) \
+ $(ibidir)/libtiff-$(libtiff-version) \
+ $(ibidir)/libgit2-$(libgit2-version) \
+ $(ibidir)/ghostscript-$(ghostscript-version)
+ tarball=gnuastro-$(gnuastro-version).tar.lz
+ $(call import-source, $(gnuastro-url), $(gnuastro-checksum))
+ $(call gbuild, gnuastro-$(gnuastro-version), static, , \
+ -j$(numthreads))
+ cp $(dtexdir)/gnuastro.tex $(ictdir)/
+ echo "GNU Astronomy Utilities $(gnuastro-version) \citep{gnuastro}" > $@
+
+$(ibidir)/help2man-$(help2man-version):
+ tarball=help2man-$(help2man-version).tar.xz
+ $(call import-source, $(help2man-url), $(help2man-checksum))
+ $(call gbuild, help2man-$(help2man-version), static, ,V=1)
+ echo "Help2man $(Help2man-version)" > $@
+
+$(ibidir)/imagemagick-$(imagemagick-version): \
+ $(ibidir)/zlib-$(zlib-version) \
+ $(ibidir)/libjpeg-$(libjpeg-version) \
+ $(ibidir)/libtiff-$(libtiff-version)
+ tarball=imagemagick-$(imagemagick-version).tar.xz
+ $(call import-source, $(imagemagick-url), $(imagemagick-checksum))
$(call gbuild, ImageMagick-$(imagemagick-version), static, \
- --without-x --disable-openmp, V=1 -j$(numthreads)) \
- && echo "ImageMagick $(imagemagick-version)" > $@
+ --without-x --disable-openmp, V=1 -j$(numthreads))
+ echo "ImageMagick $(imagemagick-version)" > $@
# `imfit' doesn't use the traditional `configure' and `make' to install
# itself. Instead of that, it uses `scons'. As a consequence, the
@@ -1025,42 +978,51 @@ $(ibidir)/imagemagick: $(ibidir)/zlib \
# by `$(idir)'. After that, each compiled program (`imfit', `imfit-mcmc'
# and `makeimage') is copied into the installation directory and an `rpath'
# is added.
-$(ibidir)/imfit: $(ibidir)/gsl \
- $(ibidir)/fftw \
- $(ibidir)/scons \
- $(ibidir)/cfitsio \
- $(tdir)/imfit-$(imfit-version).tar.gz
- cd $(ddir) \
- && unpackdir=imfit-$(imfit-version) \
- && rm -rf $$unpackdir \
- && if ! tar xf $(word 1,$(filter $(tdir)/%,$^)); then \
- echo; echo "Tar error"; exit 1; \
- fi \
- && cd $$unpackdir \
- && sed -i 's|/usr/local|$(idir)|g' SConstruct \
- && sed -i 's|/usr/include|$(idir)/include|g' SConstruct \
- && sed -i 's|.append(|.insert(0,|g' SConstruct \
- && scons --no-openmp --no-nlopt \
- --cc=$(ibdir)/gcc --cpp=$(ibdir)/g++ \
- --header-path=$(idir)/include --lib-path=$(idir)/lib imfit \
- && cp imfit $(ibdir) \
- && scons --no-openmp --no-nlopt\
- --cc=$(ibdir)/gcc --cpp=$(ibdir)/g++ \
- --header-path=$(idir)/include --lib-path=$(idir)/lib \
- imfit-mcmc \
- && cp imfit-mcmc $(ibdir) \
- && scons --no-openmp --no-nlopt\
- --cc=$(ibdir)/gcc --cpp=$(ibdir)/g++ \
- --header-path=$(idir)/include --lib-path=$(idir)/lib \
- makeimage \
- && cp makeimage $(ibdir) \
- && cp $(dtexdir)/imfit.tex $(ictdir)/ \
- && if [ "x$(on_mac_os)" != xyes ]; then \
- for p in imfit imfit-mcmc makeimage; do \
- patchelf --set-rpath $(ildir) $(ibdir)/$$p; \
- done; \
- fi \
- && echo "Imfit $(imfit-version) \citep{imfit2015}" > $@
+$(ibidir)/imfit-$(imfit-version): \
+ $(ibidir)/gsl-$(gsl-version) \
+ $(ibidir)/fftw-$(fftw-version) \
+ $(ibidir)/scons-$(scons-version) \
+ $(ibidir)/cfitsio-$(cfitsio-version)
+ tarball=imfit-$(imfit-version).tar.gz
+ $(call import-source, $(imfit-url), $(imfit-checksum))
+
+ # If the C library is in a non-standard location.
+ if ! [ x$(SYS_CPATH) = x ]; then
+ headerpath="--header-path=$(SYS_CPATH)"
+ fi
+
+ # Unpack and build imfit and its accompanying programs.
+ cd $(ddir)
+ unpackdir=imfit-$(imfit-version)
+ rm -rf $$unpackdir
+ tar xf $(tdir)/$$tarball
+ cd $$unpackdir
+ sed -i 's|/usr/local|$(idir)|g' SConstruct
+ sed -i 's|/usr/include|$(idir)/include|g' SConstruct
+ sed -i 's|.append(|.insert(0,|g' SConstruct
+ scons --no-openmp --no-nlopt \
+ --cc=$(ibdir)/gcc --cpp=$(ibdir)/g++ \
+ --header-path=$(idir)/include $$headerpath \
+ --lib-path=$(idir)/lib imfit
+ cp imfit $(ibdir)
+ scons --no-openmp --no-nlopt \
+ --cc=$(ibdir)/gcc --cpp=$(ibdir)/g++ \
+ --header-path=$(idir)/include $$headerpath \
+ --lib-path=$(idir)/lib imfit-mcmc
+ cp imfit-mcmc $(ibdir)
+ scons --no-openmp --no-nlopt \
+ --cc=$(ibdir)/gcc --cpp=$(ibdir)/g++ \
+ --header-path=$(idir)/include $$headerpath \
+ --lib-path=$(idir)/lib makeimage
+ cp makeimage $(ibdir)
+ cp $(dtexdir)/imfit.tex $(ictdir)/
+ if [ -f $(ibdir)/patchelf ]; then
+ for p in imfit imfit-mcmc makeimage; do
+ patchelf --set-rpath $(ildir) $(ibdir)/$$p
+ done
+ fi
+ cp $(dtexdir)/imfit.tex $(ictdir)/
+ echo "Imfit $(imfit-version) \citep{imfit2015}" > $@
# Minizip 1.x is actually distributed within zlib. It doesn't have its own
# independent tarball. So we need a custom build, which include the GNU
@@ -1071,39 +1033,39 @@ $(ibidir)/imfit: $(ibidir)/gsl \
#
# About deleting the final crypt.h file after installation, see
# https://bugzilla.redhat.com/show_bug.cgi?id=1424609
-$(ibidir)/minizip: $(ibidir)/automake \
- $(tdir)/zlib-$(zlib-version).tar.gz
- cd $(ddir) \
- && unpackdir=minizip-$(minizip-version) \
- && rm -rf $$unpackdir \
- && mkdir $$unpackdir \
- && if ! tar xf $(word 1,$(filter $(tdir)/%,$^)) \
- -C$$unpackdir --strip-components=1; then \
- echo; echo "Tar error"; exit 1; \
- fi \
- && cd $$unpackdir\
- && ./configure --prefix=$(idir) \
- && make \
- && cd contrib/minizip \
- && cp Makefile Makefile.orig \
- && cp ../README.contrib readme.txt \
- && autoreconf --install \
- && ./configure --prefix=$(idir) \
- && make \
- && cd ../../ \
- && make test \
- && cd contrib/minizip \
- && make -f Makefile.orig test \
- && make install \
- && rm $(iidir)/minizip/crypt.h \
- && cd ../../.. \
- && rm -rf $$unpackdir \
- && echo "Minizip $(minizip-version)" > $@
-
-$(ibidir)/missfits: $(tdir)/missfits-$(missfits-version).tar.gz
- $(call gbuild, missfits-$(missfits-version), static) \
- && cp $(dtexdir)/missfits.tex $(ictdir)/ \
- && echo "MissFITS $(missfits-version) \citep{missfits}" > $@
+$(ibidir)/minizip-$(minizip-version): $(ibidir)/automake-$(automake-version)
+ tarball=zlib-$(zlib-version).tar.gz
+ $(call import-source, $(minizip-url), $(minizip-checksum))
+ cd $(ddir)
+ unpackdir=minizip-$(minizip-version)
+ rm -rf $$unpackdir
+ mkdir $$unpackdir
+ tar xf $(tdir)/$$tarball -C$$unpackdir --strip-components=1
+ cd $$unpackdir
+ ./configure --prefix=$(idir)
+ make
+ cd contrib/minizip
+ cp Makefile Makefile.orig
+ cp ../README.contrib readme.txt
+ autoreconf --install
+ ./configure --prefix=$(idir)
+ make
+ cd ../../
+ make test
+ cd contrib/minizip
+ make -f Makefile.orig test
+ make install
+ rm $(iidir)/minizip/crypt.h
+ cd ../../..
+ rm -rf $$unpackdir
+ echo "Minizip $(minizip-version)" > $@
+
+$(ibidir)/missfits-$(missfits-version):
+ tarball=missfits-$(missfits-version).tar.gz
+ $(call import-source, $(missfits-url), $(missfits-checksum))
+ $(call gbuild, missfits-$(missfits-version), static)
+ cp $(dtexdir)/missfits.tex $(ictdir)/
+ echo "MissFITS $(missfits-version) \citep{missfits}" > $@
# Netpbm is a prerequisite of Astrometry-net, it contains a lot of programs.
# This program has a crazy dialogue installation which is override using the
@@ -1111,58 +1073,78 @@ $(ibidir)/missfits: $(tdir)/missfits-$(missfits-version).tar.gz
# ask to the user. We give all answers with a pipe to the scripts (configure
# and install). The questions are different depending on the system (tested
# on GNU/Linux and Mac OS).
-$(ibidir)/netpbm: $(ibidir)/unzip \
- $(ibidir)/libpng \
- $(ibidir)/libjpeg \
- $(ibidir)/libtiff \
- $(ibidir)/libxml2 \
- $(tdir)/netpbm-$(netpbm-version).tar.gz
- if [ x$(on_mac_os) = xyes ]; then \
- answers='\n\n$(ildir)\n\n\n\n\n\n$(ildir)/include\n\n$(ildir)/include\n\n$(ildir)/include\nnone\n\n'; \
- else \
- answers='\n\n\n\n\n\n\n\n\n\n\n\n\nnone\n\n\n'; \
- fi; \
- cd $(ddir) \
- && unpackdir=netpbm-$(netpbm-version) \
- && rm -rf $$unpackdir \
- && if ! tar xf $(word 1,$(filter $(tdir)/%,$^)); then \
- echo; echo "Tar error"; exit 1; \
- fi \
- && cd $$unpackdir \
- && printf "$$answers" | ./configure \
- && make \
- && rm -rf $(ddir)/$$unpackdir/install \
- && make package pkgdir=$(ddir)/$$unpackdir/install \
- && printf "$(ddir)/$$unpackdir/install\n$(idir)\n\n\nN\n\n\n\n\nN\n\n" \
- | ./installnetpbm \
- && cd .. \
- && rm -rf $$unpackdir \
- && echo "Netpbm $(netpbm-version)" > $@
-
-$(ibidir)/patch: $(tdir)/patch-$(patch-version).tar.gz
- $(call gbuild, patch-$(patch-version), static, ,V=1) \
- && echo "GNU Patch $(patch-version)" > $@
-
-# R programming language
-$(ibidir)/R: $(ibidir)/libpng \
- $(ibidir)/libjpeg \
- $(ibidir)/libtiff \
- $(tdir)/R-$(R-version).tar.gz
- export R_SHELL=$(SHELL); \
+$(ibidir)/netpbm-$(netpbm-version): \
+ $(ibidir)/libpng-$(libpng-version) \
+ $(ibidir)/libjpeg-$(libjpeg-version) \
+ $(ibidir)/libtiff-$(libtiff-version) \
+ $(ibidir)/libxml2-$(libxml2-version)
+ tarball=netpbm-$(netpbm-version).tar.gz
+ $(call import-source, $(netpbm-url), $(netpbm-checksum))
+ if [ x$(on_mac_os) = xyes ]; then
+ answers='\n\n$(ildir)\n\n\n\n\n\n$(ildir)/include\n\n$(ildir)/include\n\n$(ildir)/include\nnone\n\n'
+ else
+ answers='\n\n\n\n\n\n\n\n\n\n\n\n\nnone\n\n\n'
+ fi
+ cd $(ddir)
+ unpackdir=netpbm-$(netpbm-version)
+ rm -rf $$unpackdir
+ tar xf $(tdir)/$$tarball
+ cd $$unpackdir
+ printf "$$answers" | ./configure
+ make
+ rm -rf $(ddir)/$$unpackdir/install
+ make package pkgdir=$(ddir)/$$unpackdir/install
+ printf "$(ddir)/$$unpackdir/install\n$(idir)\n\n\nN\n\n\n\n\nN\n\n" \
+ | ./installnetpbm
+ cd ..
+ rm -rf $$unpackdir
+ echo "Netpbm $(netpbm-version)" > $@
+
+$(ibidir)/patch-$(patch-version):
+ tarball=patch-$(patch-version).tar.gz
+ $(call import-source, $(patch-url), $(patch-checksum))
+ $(call gbuild, patch-$(patch-version), static, ,V=1)
+ echo "GNU Patch $(patch-version)" > $@
+
+$(ibidir)/pcre-$(pcre-version):
+ tarball=pcre-$(pcre-version).tar.gz
+ $(call import-source, $(pcre-url), $(pcre-checksum))
+ $(call gbuild, pcre-$(pcre-version), static, \
+ --enable-pcretest-libreadline \
+ --enable-unicode-properties \
+ --includedir=$(iidir)/pcre \
+ --enable-pcregrep-libbz2 \
+ --enable-pcregrep-libz \
+ , V=1 -j$(numthreads))
+ echo "Perl Compatible Regular Expressions $(pcre-version)" > $@
+
+$(ibidir)/R-$(R-version): \
+ $(ibidir)/pcre-$(pcre-version) \
+ $(ibidir)/cairo-$(cairo-version) \
+ $(ibidir)/libpng-$(libpng-version) \
+ $(ibidir)/libjpeg-$(libjpeg-version) \
+ $(ibidir)/libtiff-$(libtiff-version) \
+ $(ibidir)/libpaper-$(libpaper-version)
+ tarball=R-$(R-version).tar.gz
+ $(call import-source, $(R-url), $(R-checksum))
+
+ export R_SHELL=$(SHELL)
$(call gbuild, R-$(R-version), static, \
--without-x --with-readline \
- --disable-openmp) \
- && echo "R $(R-version)" > $@
+ --disable-openmp, -j$(numthreads))
+ echo "R $(R-version)" > $@
# SCAMP documentation says ATLAS is a mandatory prerequisite for using
# SCAMP. We have ATLAS into the project but there are some problems with the
# libraries that are not yet solved. However, we tried to install it with
# the option --enable-openblas and it worked (same issue happened with
# `sextractor'.
-$(ibidir)/scamp: $(ibidir)/fftw \
- $(ibidir)/openblas \
- $(ibidir)/cdsclient \
- $(tdir)/scamp-$(scamp-version).tar.lz
+$(ibidir)/scamp-$(scamp-version): \
+ $(ibidir)/fftw-$(fftw-version) \
+ $(ibidir)/openblas-$(openblas-version) \
+ $(ibidir)/cdsclient-$(cdsclient-version)
+ tarball=scamp-$(scamp-version).tar.lz
+ $(call import-source, $(scamp-url), $(scamp-checksum))
$(call gbuild, scamp-$(scamp-version), static, \
--enable-threads \
--enable-openblas \
@@ -1170,84 +1152,90 @@ $(ibidir)/scamp: $(ibidir)/fftw \
--with-fftw-libdir=$(idir) \
--with-fftw-incdir=$(idir)/include \
--with-openblas-libdir=$(ildir) \
- --with-openblas-incdir=$(idir)/include) \
- && cp $(dtexdir)/scamp.tex $(ictdir)/ \
- && echo "SCAMP $(scamp-version) \citep{scamp}" > $@
+ --with-openblas-incdir=$(idir)/include)
+ cp $(dtexdir)/scamp.tex $(ictdir)/
+ echo "SCAMP $(scamp-version) \citep{scamp}" > $@
# Since `scons' doesn't use the traditional GNU installation with
# `configure' and `make' it is installed manually using `python'.
-$(ibidir)/scons: $(ibidir)/python \
- $(tdir)/scons-$(scons-version).tar.gz
- cd $(ddir) \
- && unpackdir=scons-$(scons-version) \
- && rm -rf $$unpackdir \
- && if ! tar xf $(word 1,$(filter $(tdir)/%,$^)); then \
- echo; echo "Tar error"; exit 1; \
- fi \
- && cd $$unpackdir \
- && python setup.py install \
- && echo "SCons $(scons-version)" > $@
+$(ibidir)/scons-$(scons-version): $(ibidir)/python-$(python-version)
+ tarball=scons-$(scons-version).tar.gz
+ $(call import-source, $(scons-url), $(scons-checksum))
+ cd $(ddir)
+ unpackdir=scons-$(scons-version)
+ rm -rf $$unpackdir
+ tar xf $(tdir)/$$tarball
+ cd $$unpackdir
+ python setup.py install
+ echo "SCons $(scons-version)" > $@
# Sextractor crashes complaining about not linking with some ATLAS
# libraries. But we can override this issue since we have Openblas
# installed, it is just necessary to explicity tell sextractor to use it in
# the configuration step.
-$(ibidir)/sextractor: $(ibidir)/fftw \
- $(ibidir)/openblas \
- $(tdir)/sextractor-$(sextractor-version).tar.lz
+$(ibidir)/sextractor-$(sextractor-version): \
+ $(ibidir)/fftw-$(fftw-version) \
+ $(ibidir)/openblas-$(openblas-version)
+ tarball=sextractor-$(sextractor-version).tar.lz
+ $(call import-source, $(sextractor-url), $(sextractor-checksum))
$(call gbuild, sextractor-$(sextractor-version), static, \
--enable-threads --enable-openblas \
--with-openblas-libdir=$(ildir) \
- --with-openblas-incdir=$(idir)/include) \
- && ln -fs $(ibdir)/sex $(ibdir)/sextractor \
- && cp $(dtexdir)/sextractor.tex $(ictdir)/ \
- && echo "SExtractor $(sextractor-version) \citep{sextractor}" > $@
-
-$(ibidir)/swarp: $(ibidir)/fftw \
- $(tdir)/swarp-$(swarp-version).tar.gz
+ --with-openblas-incdir=$(idir)/include)
+ ln -fs $(ibdir)/sex $(ibdir)/sextractor
+ cp $(dtexdir)/sextractor.tex $(ictdir)/
+ echo "SExtractor $(sextractor-version) \citep{sextractor}" > $@
+
+$(ibidir)/swarp-$(swarp-version): $(ibidir)/fftw-$(fftw-version)
+ tarball=swarp-$(swarp-version).tar.gz
+ $(call import-source, $(swarp-url), $(swarp-checksum))
$(call gbuild, swarp-$(swarp-version), static, \
- --enable-threads) \
- && cp $(dtexdir)/swarp.tex $(ictdir)/ \
- && echo "SWarp $(swarp-version) \citep{swarp}" > $@
+ --enable-threads)
+ cp $(dtexdir)/swarp.tex $(ictdir)/
+ echo "SWarp $(swarp-version) \citep{swarp}" > $@
-$(ibidir)/swig: $(tdir)/swig-$(swig-version).tar.gz
+$(ibidir)/swig-$(swig-version):
# Option --without-pcre was a suggestion once the configure step
# was tried and it failed. It was not recommended but it works!
# pcr is a dependency of swig
- $(call gbuild, swig-$(swig-version), static, --without-pcre) \
- && echo "Swig $(swig-version)" > $@
-
-$(ibidir)/xlsxio: $(ibidir)/cmake \
- $(ibidir)/expat \
- $(ibidir)/minizip \
- $(tdir)/xlsxio-$(xlsxio-version).tar.gz
- if [ x$(on_mac_os) = xyes ]; then \
- export CC=clang; \
- export CXX=clang++; \
- export LDFLAGS="$$LDFLAGS -lbz2"; \
- else \
- export LDFLAGS="$$LDFLAGS -lbz2 -lbsd"; \
- fi; \
+ tarball=swig-$(swig-version).tar.gz
+ $(call import-source, $(swig-url), $(swig-checksum))
+ $(call gbuild, swig-$(swig-version), static, --without-pcre)
+ echo "Swig $(swig-version)" > $@
+
+$(ibidir)/xlsxio-$(xlsxio-version): \
+ $(ibidir)/cmake-$(cmake-version) \
+ $(ibidir)/expat-$(expat-version) \
+ $(ibidir)/minizip-$(minizip-version)
+ tarball=xlsxio-$(xlsxio-version).tar.gz
+ $(call import-source, $(xlsxio-url), $(xlsxio-checksum))
+ if [ x$(on_mac_os) = xyes ]; then
+ export CC=clang
+ export CXX=clang++
+ export LDFLAGS="$$LDFLAGS -lbz2"
+ else
+ export LDFLAGS="$$LDFLAGS -lbz2 -lbsd"
+ fi
$(call cbuild, xlsxio-$(xlsxio-version), static, \
-DMINIZIP_DIR:PATH=$(idir) \
-DMINIZIP_LIBRARIES=$(idir) \
- -DMINIZIP_INCLUDE_DIRS=$(iidir)) \
- && echo "Correcting internal linking of XLSX I/O executables..." \
- && if [ "x$(on_mac_os)" = xyes ]; then \
- for f in $(ibdir)/xlsxio_* $(ildir)/libxlsxio_*.dylib; do \
- install_name_tool -change libxlsxio_read.dylib \
- $(ildir)/libxlsxio_read.dylib $$f; \
- install_name_tool -change libxlsxio_write.dylib \
- $(ildir)/libxlsxio_write.dylib $$f; \
- done; \
- else \
- for f in $(ibdir)/xlsxio_* $(ildir)/libxlsxio_*.so; do \
- patchelf --set-rpath $(ildir) $$f; \
- done; \
- fi \
- && echo "Deleting XLSX I/O example files..." \
- && rm $(ibdir)/example_xlsxio_* \
- && echo "XLSX I/O $(xlsxio-version)" > $@
+ -DMINIZIP_INCLUDE_DIRS=$(iidir))
+ echo "Correcting internal linking of XLSX I/O executables..."
+ if [ "x$(on_mac_os)" = xyes ]; then
+ for f in $(ibdir)/xlsxio_* $(ildir)/libxlsxio_*.dylib; do
+ install_name_tool -change libxlsxio_read.dylib \
+ $(ildir)/libxlsxio_read.dylib $$f
+ install_name_tool -change libxlsxio_write.dylib \
+ $(ildir)/libxlsxio_write.dylib $$f
+ done
+ else
+ for f in $(ibdir)/xlsxio_* $(ildir)/libxlsxio_*.so; do
+ patchelf --set-rpath $(ildir) $$f
+ done
+ fi
+ echo "Deleting XLSX I/O example files..."
+ rm $(ibdir)/example_xlsxio_*
+ echo "XLSX I/O $(xlsxio-version)" > $@
@@ -1272,11 +1260,11 @@ $(ibidir)/xlsxio: $(ibidir)/cmake \
# (`ftp.dante.de'), however, it is far too slow (when I tested it). The
# `rit.edu' server seems to be a good alternative (given the importance of
# NY on the internet infrastructure).
-tlmirror=http://mirrors.rit.edu/CTAN/systems/texlive/tlnet
+texlive-url=http://mirrors.rit.edu/CTAN/systems/texlive/tlnet
+$(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf
-# The core TeX Live system.
-$(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf \
- $(tdir)/install-tl-unx.tar.gz
+ tarball=install-tl-unx.tar.gz
+ $(call import-source, $(texlive-url), NO-CHECK-SUM)
# Unpack, enter the directory, and install based on the given
# configuration (prerequisite of this rule).
@@ -1318,7 +1306,7 @@ $(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf \
# TeXLive using that. The old tarball will be preserved, but will
# have an '-OLD' suffix after it.
if ./install-tl --profile=texlive.conf -repository \
- $(tlmirror) 2> log.txt; then
+ $(texlive-url) 2> log.txt; then
# Put a symbolic link of the TeX Live executables in `ibdir' to
# avoid all the complexities of its sub-directories and additions
@@ -1368,7 +1356,7 @@ $(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf \
$$topdir/reproduce/software/config/texlive.conf \
> texlive.conf
if ./install-tl --profile=texlive.conf -repository \
- $(tlmirror); then
+ $(texlive-url); then
ln -fs $(idir)/texlive/maneage/bin/*/* $(ibdir)/
echo "TeX Live is ready." > $@
else
@@ -1398,15 +1386,8 @@ $(itidir)/texlive-ready-tlmgr: reproduce/software/config/texlive.conf \
# don't currently build biber from source. So we can't choose the library
# version. But we have the source and build instructions for the `nsl'
# library. When we later build biber from source, we can easily use them.
-#
-#ifeq ($(on_mac_os),yes)
-#forbiber =
-#else
-#forbiber = $(ibidir)/libnsl
-#endif
$(itidir)/texlive: reproduce/software/config/texlive-packages.conf \
- $(itidir)/texlive-ready-tlmgr \
- $(forbiber)
+ $(itidir)/texlive-ready-tlmgr
# To work with TeX live installation, we'll need the internet.
@res=$$(cat $(itidir)/texlive-ready-tlmgr)
@@ -1419,7 +1400,7 @@ $(itidir)/texlive: reproduce/software/config/texlive-packages.conf \
# Before checking LaTeX packages, update tlmgr itself.
tlmgr option backupdir $$backupdir
- tlmgr -repository $(tlmirror) update --self
+ tlmgr -repository $(texlive-url) update --self
# Install all the extra necessary packages. If LaTeX complains
# about not finding a command/file/what-ever/XXXXXX, simply run
diff --git a/reproduce/software/make/python.mk b/reproduce/software/make/python.mk
index eef8279..ccfbc72 100644
--- a/reproduce/software/make/python.mk
+++ b/reproduce/software/make/python.mk
@@ -3,8 +3,12 @@
# ------------------------------------------------------------------------
# !!!!! IMPORTANT NOTES !!!!!
#
-# This Makefile will be run by the initial `./project configure' script. It
-# is not included into the reproduction pipe after that.
+# This Makefile will be loaded into 'high-level.mk', which is called by the
+# `./project configure' script. It is not included into the project
+# afterwards.
+#
+# This Makefile contains instructions to build all the Python-related
+# software within the project.
#
# ------------------------------------------------------------------------
#
@@ -52,274 +56,52 @@ python-major-version = $(shell echo $(python-version) | awk 'BEGIN{FS="."} \
-# Tarballs
-# --------
-#
-# All the necessary tarballs are defined and prepared with this rule.
-#
-# Note that we want the tarballs to follow the convention of NAME-VERSION
-# before the `tar.XX' prefix. For those programs that don't follow this
-# convention, but include the name/version in their tarball names with
-# another format, we'll do the modification before the download so the
-# downloaded file has our desired format.
-pytarballs = $(foreach t, asn1crypto-$(asn1crypto-version).tar.gz \
- asteval-$(asteval-version).tar.gz \
- astroquery-$(astroquery-version).tar.gz \
- astropy-$(astropy-version).tar.gz \
- beautifulsoup4-$(beautifulsoup4-version).tar.gz \
- certifi-$(certifi-version).tar.gz \
- cffi-$(cffi-version).tar.gz \
- chardet-$(chardet-version).tar.gz \
- corner-$(corner-version).tar.gz \
- cryptography-$(cryptography-version).tar.gz \
- cycler-$(cycler-version).tar.gz \
- cython-$(cython-version).tar.gz \
- eigency-$(eigency-version).tar.gz \
- emcee-$(emcee-version).tar.gz \
- esutil-$(esutil-version).tar.gz \
- entrypoints-$(entrypoints-version).tar.gz \
- flake8-$(flake8-version).tar.gz \
- future-$(future-version).tar.gz \
- galsim-$(galsim-version).tar.gz \
- h5py-$(h5py-version).tar.gz \
- html5lib-$(html5lib-version).tar.gz \
- idna-$(idna-version).tar.gz \
- jeepney-$(jeepney-version).tar.gz \
- kiwisolver-$(kiwisolver-version).tar.gz \
- keyring-$(keyring-version).tar.gz \
- libffi-$(libffi-version).tar.gz \
- lmfit-$(lmfit-version).tar.gz \
- lsstdesccoord-$(lsstdesccoord-version).tar.gz \
- matplotlib-$(matplotlib-version).tar.gz \
- mpi4py-$(mpi4py-version).tar.gz \
- mpmath-$(mpmath-version).tar.gz \
- numpy-$(numpy-version).zip \
- pkgconfig-$(pypkgconfig-version).tar.gz \
- pip-$(pip-version).tar.gz \
- pexpect-$(pexpect-version).tar.gz \
- pybind11-$(pybind11-version).tar.gz \
- pycodestyle-$(pycodestyle-version).tar.gz \
- pycparser-$(pycparser-version).tar.gz \
- pyflakes-$(pyflakes-version).tar.gz \
- python-$(python-version).tar.gz \
- python-dateutil-$(python-dateutil-version).tar.gz \
- pyparsing-$(pyparsing-version).tar.gz \
- pyyaml-$(pyyaml-version).tar.gz \
- requests-$(requests-version).tar.gz \
- scipy-$(scipy-version).tar.gz \
- secretstorage-$(secretstorage-version).tar.gz \
- setuptools-$(setuptools-version).zip \
- setuptools_scm-$(setuptools_scm-version).tar.gz \
- sip_tpv-$(sip_tpv-version).tar.gz \
- six-$(six-version).tar.gz \
- soupsieve-$(soupsieve-version).tar.gz \
- sympy-$(sympy-version).tar.gz \
- uncertainties-$(uncertainties-version).tar.gz \
- urllib3-$(urllib3-version).tar.gz \
- webencodings-$(webencodings-version).tar.gz \
- virtualenv-$(virtualenv-version).tar.gz \
- , $(tdir)/$(t) )
-pytopurl=https://files.pythonhosted.org/packages
-$(pytarballs): $(tdir)/%:
-
- # Convenience variable
- # --------------------
- #
- # `n' is just for convenience and to avoid having to repeat the
- # package tarball name in the conditional to find its URL.
- #
- # For some packages (for example `python-dateutil', or those with
- # a number or dash in their name), we need special consideration
- # because the tokenization above will produce `python' as the
- # first string.
- @if [ $* = python-dateutil-$(python-dateutil-version).tar.gz ]; then
- n=dateutil
-
- # elif [ $* = strange-tarball5name-version.tar.gz ]; then
- # n=strange5-name
- else
- # Remove the version numbers and suffix from the tarball name so
- # we can search more easily only with the program name. This
- # requires the first character of the version to be a digit:
- # packages such as `foo' and `foo-3' will not be distinguished,
- # but `foo' and `foo2' will be distinguished.
- n=$$(echo $* | sed -e's/-[0-9]/ /' -e's/\./ /g' \
- | awk '{print $$1}' )
-
- fi
-
- # Set the top download link of the requested tarball. The ones
- # that have non-standard filenames (differing from our archived
- # tarball names) are treated first, then the standard ones.
- mergenames=1
- if [ $$n = cython ]; then
- mergenames=0
- c=$(cython-checksum)
- hash=36/da/fcb979fc8cb486a67a013d6aefefbb95a3e19e67e49dff8a35e014046c5e
- h=$(pytopurl)/$$hash/Cython-$(cython-version).tar.gz
- elif [ $$n = galsim ]; then
- mergenames=0
- c=$(galsim-checksum)
- hash=8f/3b/bbc7cff7590d3624d528564f08745f071e316c67fce154ad38210833c103
- h=$(pytopurl)/$$hash/GalSim-$(galsim-version).tar.gz
- elif [ $$n = lsstdesccoord ]; then
- mergenames=0
- c=$(lsstdesccoord-checksum)
- hash=9d/39/ad17697571c9aed36d20ed9ae0a135e3a734fb7f15a8605f92bf27c3b02c
- h=$(pytopurl)/$$hash/LSSTDESC.Coord-$(lsstdesccoord-version).tar.gz
- elif [ $$n = python ]; then
- mergenames=0
- c=$(python-checksum)
- h=https://www.python.org/ftp/python/$(python-version)/Python-$(python-version).tgz
- elif [ $$n = pyyaml ]; then
- mergenames=0
- c=$(pyyaml-checksum)
- hash=9f/2c/9417b5c774792634834e730932745bc09a7d36754ca00acf1ccd1ac2594d
- h=$(pytopurl)/$$hash/PyYAML-$(pyyaml-version).tar.gz
- elif [ $$n = libffi ]; then
- mergenames=0
- c=$(libffi-checksum)
- h=ftp://sourceware.org/pub/libffi/libffi-$(libffi-version).tar.gz
- elif [ $$n = secretstorage ]; then
- mergenames=0
- c=$(secretstorage-checksum)
- hash=a6/89/df343dbc2957a317127e7ff2983230dc5336273be34f2e1911519d85aeb5
- h=$(pytopurl)/$$hash/SecretStorage-$(secretstorage-version).tar.gz
- elif [ $$n = asn1crypto ]; then h=fc/f1/8db7daa71f414ddabfa056c4ef792e1461ff655c2ae2928a2b675bfed6b4; c=$(asn1crypto-checksum)
- elif [ $$n = asteval ]; then h=50/3f/29b7935c6dc09ee96dc347edc66c57e8ef68d595dd35b763a36a117acc8c; c=$(asteval-checksum)
- elif [ $$n = astroquery ]; then h=e2/af/a3cd3b30745832a0e81f5f13327234099aaf5d03b7979ac947a888e68e91; c=$(astroquery-checksum)
- elif [ $$n = astropy ]; then h=de/96/7feaca4b9be134128838395a9d924ea0b389ed4381702dcd9d11ae31789f; c=$(astropy-checksum)
- elif [ $$n = beautifulsoup4 ]; then h=80/f2/f6aca7f1b209bb9a7ef069d68813b091c8c3620642b568dac4eb0e507748; c=$(beautifulsoup4-checksum)
- elif [ $$n = certifi ]; then h=55/54/3ce77783acba5979ce16674fc98b1920d00b01d337cfaaf5db22543505ed; c=$(certifi-checksum)
- elif [ $$n = cffi ]; then h=64/7c/27367b38e6cc3e1f49f193deb761fe75cda9f95da37b67b422e62281fcac; c=$(cffi-checksum)
- elif [ $$n = chardet ]; then h=fc/bb/a5768c230f9ddb03acc9ef3f0d4a3cf93462473795d18e9535498c8f929d; c=$(chardet-checksum)
- elif [ $$n = corner ]; then h=65/af/a7ba022f2d5787f51db91b5550cbe8e8c40a6eebd8f15119e743a09a9c19; c=$(corner-checksum)
- elif [ $$n = cryptography ]; then h=07/ca/bc827c5e55918ad223d59d299fff92f3563476c3b00d0a9157d9c0217449; c=$(cryptography-checksum)
- elif [ $$n = cycler ]; then h=c2/4b/137dea450d6e1e3d474e1d873cd1d4f7d3beed7e0dc973b06e8e10d32488; c=$(cycler-checksum)
- elif [ $$n = eigency ]; then h=fb/6e/bc4359fbfb0bb0b588ec328251b0d0836bdd7c0a4c568959ea06df023e18; c=$(eigency-checksum)
- elif [ $$n = emcee ]; then h=f0/c0/cd433f2aedeef9b1e5ed7d236c82564f7518fe7fe2238fa141ea9ce08e73; c=$(emcee-checksum)
- elif [ $$n = entrypoints ]; then h=b4/ef/063484f1f9ba3081e920ec9972c96664e2edb9fdc3d8669b0e3b8fc0ad7c; c=$(entrypoints-checksum)
- elif [ $$n = esutil ]; then h=5b/91/77e38282fd3d47b55e351544ab179eb209b309a8d2d40f8cdb6241beda00; c=$(esutil-checksum)
- elif [ $$n = flake8 ]; then h=8d/a7/99222c9200af533c1ecb1120d99adbd1c033b57296ac5cb39d121db007a8; c=$(flake8-checksum)
- elif [ $$n = future ]; then h=3f/bf/57733d44afd0cf67580658507bd11d3ec629612d5e0e432beb4b8f6fbb04; c=$(future-checksum)
- elif [ $$n = h5py ]; then h=43/27/a6e7dcb8ae20a4dbf3725321058923fec262b6f7835179d78ccc8d98deec; c=$(h5py-checksum)
- elif [ $$n = html5lib ]; then h=85/3e/cf449cf1b5004e87510b9368e7a5f1acd8831c2d6691edd3c62a0823f98f; c=$(html5lib-checksum)
- elif [ $$n = idna ]; then h=ad/13/eb56951b6f7950cadb579ca166e448ba77f9d24efc03edd7e55fa57d04b7; c=$(idna-checksum)
- elif [ $$n = jeepney ]; then h=16/1d/74adf3b164a8d19a60d0fcf706a751ffa2a1eaa8e5bbb1b6705c92a05263; c=$(jeepney-checksum)
- elif [ $$n = keyring ]; then h=15/88/c6ce9509438bc02d54cf214923cfba814412f90c31c95028af852b19f9b2; c=$(keyring-checksum)
- elif [ $$n = kiwisolver ]; then h=31/60/494fcce70d60a598c32ee00e71542e52e27c978e5f8219fae0d4ac6e2864; c=$(kiwisolver-checksum)
- elif [ $$n = lmfit ]; then h=59/6e/117794cf85b7345361877e49245870490ae438f1981dea3c6af1316b30e7; c=$(lmfit-checksum)
- elif [ $$n = matplotlib ]; then h=12/d1/7b12cd79c791348cb0c78ce6e7d16bd72992f13c9f1e8e43d2725a6d8adf; c=$(matplotlib-checksum)
- elif [ $$n = mpi4py ]; then h=04/f5/a615603ce4ab7f40b65dba63759455e3da610d9a155d4d4cece1d8fd6706; c=$(mpi4py-checksum)
- elif [ $$n = mpmath ]; then h=ca/63/3384ebb3b51af9610086b23ea976e6d27d6d97bf140a76a365bd77a3eb32; c=$(mpmath-checksum)
- elif [ $$n = numpy ]; then h=ac/36/325b27ef698684c38b1fe2e546e2e7ef9cecd7037bcdb35c87efec4356af; c=$(numpy-checksum)
- elif [ $$n = pexpect ]; then h=1c/b1/362a0d4235496cb42c33d1d8732b5e2c607b0129ad5fdd76f5a583b9fcb3; c=$(pexpect-checksum)
- elif [ $$n = pip ]; then h=4c/4d/88bc9413da11702cbbace3ccc51350ae099bb351febae8acc85fec34f9af; c=$(pip-checksum)
- elif [ $$n = pkgconfig ]; then h=6e/a9/ff67ef67217dfdf2aca847685fe789f82b931a6957a3deac861297585db6; c=$(pypkgconfig-checksum)
- elif [ $$n = pybind11 ]; then h=aa/91/deb6743e79e22ab01502296570b39b8404f10cc507a6692d612a7fee8d51; c=$(pybind11-checksum)
- elif [ $$n = pycodestyle ]; then h=1c/d1/41294da5915f4cae7f4b388cea6c2cd0d6cd53039788635f6875dfe8c72f; c=$(pycodestyle-checksum)
- elif [ $$n = pycparser ]; then h=68/9e/49196946aee219aead1290e00d1e7fdeab8567783e83e1b9ab5585e6206a; c=$(pycparser-checksum)
- elif [ $$n = pyflakes ]; then h=52/64/87303747635c2988fcaef18af54bfdec925b6ea3b80bcd28aaca5ba41c9e; c=$(pyflakes-checksum)
- elif [ $$n = pyparsing ]; then h=b9/b8/6b32b3e84014148dcd60dd05795e35c2e7f4b72f918616c61fdce83d27fc; c=$(pyparsing-checksum)
- elif [ $$n = dateutil ]; then h=ad/99/5b2e99737edeb28c71bcbec5b5dda19d0d9ef3ca3e92e3e925e7c0bb364c; c=$(python-dateutil-checksum)
- elif [ $$n = requests ]; then h=52/2c/514e4ac25da2b08ca5a464c50463682126385c4272c18193876e91f4bc38; c=$(requests-checksum)
- elif [ $$n = scipy ]; then h=ee/5b/5afcd1c46f97b3c2ac3489dbc95d6ca28eacf8e3634e51f495da68d97f0f; c=$(scipy-checksum)
- elif [ $$n = secretstorage ]; then h=a6/89/df343dbc2957a317127e7ff2983230dc5336273be34f2e1911519d85aeb5; c=$(secretstorage-checksum)
- elif [ $$n = setuptools ]; then h=11/0a/7f13ef5cd932a107cd4c0f3ebc9d831d9b78e1a0e8c98a098ca17b1d7d97; c=$(setuptools-checksum)
- elif [ $$n = setuptools_scm ]; then h=83/44/53cad68ce686585d12222e6769682c4bdb9686808d2739671f9175e2938b; c=$(setuptools_scm-checksum)
- elif [ $$n = six ]; then h=dd/bf/4138e7bfb757de47d1f4b6994648ec67a51efe58fa907c1e11e350cddfca; c=$(six-checksum)
- elif [ $$n = sip_tpv ]; then h=27/93/a973aab2a3bf0c12cb385611819710921e13b090304c6bd015026cf9c502; c=$(sip_tpv-checksum)
- elif [ $$n = soupsieve ]; then h=0c/52/e9088bb9b96e2d39fc3b33fcda5b4fde9d71473536ac660a1ca9a0958a2f; c=$(soupsieve-checksum)
- elif [ $$n = sympy ]; then h=54/2e/6adb11fe599d4cfb7e8833753350ac51aa2c0603c226b36f9051cc9d2425; c=$(sympy-checksum)
- elif [ $$n = uncertainties ]; then h=2a/c2/babbe5b16141859dd799ed31c03987100a7b6d0ca7c0ed4429c96ce60fdf; c=$(uncertainties-checksum)
- elif [ $$n = urllib3 ]; then h=b1/53/37d82ab391393565f2f831b8eedbffd57db5a718216f82f1a8b4d381a1c1; c=$(urllib3-checksum)
- elif [ $$n = virtualenv ]; then h=51/aa/c395a6e6eaaedfa5a04723b6446a1df783b16cca6fec66e671cede514688; c=$(virtualenv-checksum)
- elif [ $$n = webencodings ]; then h=0b/02/ae6ceac1baeda530866a85075641cec12989bd8d31af6d5ab4a3e8c92f47; c=$(webencodings-checksum)
-# elif [ $$n = strange5-name ]; then h=XXXXX; c=$(XXXXX-checksum)
- else
- echo; echo; echo;
- echo "'$$n' not recognized as a dependency name to download."
- echo; echo; echo;
- exit 1
- fi
-
- # Download the requested tarball. Note that some packages may not
- # follow our naming convention (where the package name is merged
- # with its version number). In such cases, `w' will be the full
- # address, not just the top directory address. But since we are
- # storing all the tarballs in one directory, we want it to have
- # the same naming convention, so we'll download it to a temporary
- # name, then rename that.
- rm -f "$@.unchecked"
- if [ -f $(DEPENDENCIES-DIR)/$* ]; then
- cp $(DEPENDENCIES-DIR)/$* "$@.unchecked"
- else
- if [ $$mergenames = 1 ]; then tarballurl=$(pytopurl)/$$h/"$*"
- else tarballurl=$$h
- fi
-
- # Download using the script specially defined for this job.
- touch $(lockdir)/download
- downloader="wget --no-use-server-timestamps -O"
- $(downloadwrapper) "$$downloader" $(lockdir)/download \
- $$tarballurl "$@.unchecked" "$(backupservers)"
- fi
-
- # Make sure this is the expected tarball. Note that we now have a
- # controlled `sha512sum' build (as part of GNU Coreutils). So we
- # don't need to check its existance like `basic.mk'.
- checksum=$$(sha512sum "$@.unchecked" | awk '{print $$1}')
- if [ x"$$checksum" = x"$$c" ]; then
- mv "$@.unchecked" "$@"
- else
- echo "ERROR: Non-matching checksum for '$*'."
- echo "Checksum should be: $$c"
- echo "Checksum is: $$checksum"
- exit 1
- fi
-
-
-
-
-
# Necessary programs and libraries
# --------------------------------
#
# While this Makefile is for Python programs, in some cases, we need
# certain programs (like Python itself), or libraries for the modules.
-$(ibidir)/libffi: $(tdir)/libffi-$(libffi-version).tar.gz
+$(ibidir)/libffi-$(libffi-version):
+ # Prepare the source.
+ tarball=libffi-$(libffi-version).tar.gz
+ $(call import-source, $(libffi-url), $(libffi-checksum))
+
+ # Build libffi.
+ $(call gbuild, libffi-$(libffi-version), , \
+ CFLAGS="-DNO_JAVA_RAW_API=1")
# On some Fedora systems, libffi installs in `lib64', not
# `lib'. This will cause problems when building setuptools
# later. To fix this problem, we'll first check if this has indeed
# happened (it exists under `lib64', but not under `lib'). If so,
# we'll put a copy of the installed libffi libraries in `lib'.
- $(call gbuild, libffi-$(libffi-version), , \
- CFLAGS="-DNO_JAVA_RAW_API=1") \
- && if [ -f $(idir)/lib64/libffi.a ] \
- && ! [ -f $(idir)/lib/libffi.a ]; then \
- cp $(idir)/lib64/libffi* $(ildir)/; \
- fi \
- && echo "Libffi $(libffi-version)" > $@
-
-$(ibidir)/python: $(ibidir)/libffi \
- $(tdir)/python-$(python-version).tar.gz
+ if [ -f $(idir)/lib64/libffi.a ] && ! [ -f $(idir)/lib/libffi.a ]; then
+ cp $(idir)/lib64/libffi* $(ildir)/
+ fi
+ echo "Libffi $(libffi-version)" > $@
+
+$(ibidir)/python-$(python-version): $(ibidir)/libffi-$(libffi-version)
+
+ # Download the source.
+ tarball=python-$(python-version).tar.gz
+ $(call import-source, $(python-url), $(python-checksum))
+
# On Mac systems, the build complains about `clang' specific
# features, so we can't use our own GCC build here.
- if [ x$(on_mac_os) = xyes ]; then \
- export CC=clang; \
- export CXX=clang++; \
- fi; \
+ if [ x$(on_mac_os) = xyes ]; then
+ export CC=clang
+ export CXX=clang++
+ fi
$(call gbuild, Python-$(python-version),, \
--without-ensurepip \
--with-system-ffi \
- --enable-shared) \
- && ln -sf $(ildir)/python$(python-major-version) $(ildir)/python \
- && ln -sf $(ibdir)/python$(python-major-version) $(ibdir)/python \
- && ln -sf $(iidir)/python$(python-major-version)m $(iidir)/python$(python-major-version) \
- && rm -rf $(ipydir) \
- && mkdir $(ipydir) \
- && echo "Python $(python-version)" > $@
+ --enable-shared, -j$(numthreads))
+ ln -sf $(ildir)/python$(python-major-version) $(ildir)/python
+ ln -sf $(ibdir)/python$(python-major-version) $(ibdir)/python
+ ln -sf $(iidir)/python$(python-major-version)m $(iidir)/python$(python-major-version)
+ rm -rf $(ipydir)
+ mkdir $(ipydir)
+ echo "Python $(python-version)" > $@
@@ -343,22 +125,22 @@ $(ibidir)/python: $(ibidir)/libffi \
# pyhook_before: optional steps before running `python setup.py build'
# pyhook_after: optional steps after running `python setup.py install'
pybuild = cd $(ddir); rm -rf $(2); \
- if ! $(1) $(word 1,$(filter $(tdir)/%,$^)); then \
- echo; echo "Tar error"; exit 1; \
- fi; \
- cd $(2); \
- if [ "x$(strip $(3))" != x ]; then \
- sed -e 's|@LIBDIR[@]|'"$(ildir)"'|' \
- -e 's|@INCDIR[@]|'"$(idir)/include"'|' \
- $(3) > site.cfg; \
- fi; \
- if type pyhook_before &>/dev/null; then pyhook_before; fi \
- && python setup.py build \
- && python setup.py install \
- && if type pyhook_after &>/dev/null; then pyhook_after; fi \
- && cd .. \
- && rm -rf $(2) \
- && echo "$(4)" > $@
+ if ! $(1) $(tdir)/$$tarball; then \
+ echo; echo "Tar error"; exit 1; \
+ fi; \
+ cd $(2); \
+ if [ "x$(strip $(3))" != x ]; then \
+ sed -e 's|@LIBDIR[@]|'"$(ildir)"'|' \
+ -e 's|@INCDIR[@]|'"$(idir)/include"'|' \
+ $(3) > site.cfg; \
+ fi; \
+ if type pyhook_before &>/dev/null; then pyhook_before; fi; \
+ python setup.py build; \
+ python setup.py install; \
+ if type pyhook_after &>/dev/null; then pyhook_after; fi; \
+ cd ..; \
+ rm -rf $(2); \
+ echo "$(4)" > $@
@@ -368,31 +150,40 @@ pybuild = cd $(ddir); rm -rf $(2); \
# ---------------
#
# All the necessary Python modules go here.
-$(ipydir)/asn1crypto: $(ipydir)/setuptools \
- $(tdir)/asn1crypto-$(asn1crypto-version).tar.gz
+$(ipydir)/asn1crypto-$(asn1crypto-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=asn1crypto-$(asn1crypto-version).tar.gz
+ $(call import-source, $(asn1crypto-url), $(asn1crypto-checksum))
$(call pybuild, tar xf, asn1crypto-$(asn1crypto-version), , \
Asn1crypto $(asn1crypto-version))
-$(ipydir)/asteval: $(ipydir)/numpy \
- $(tdir)/asteval-$(asteval-version).tar.gz
+$(ipydir)/asteval-$(asteval-version): $(ipydir)/numpy-$(numpy-version)
+ tarball=asteval-$(asteval-version).tar.gz
+ $(call import-source, $(asteval-url), $(asteval-checksum))
$(call pybuild, tar xf, asteval-$(asteval-version), , \
ASTEVAL $(asteval-version))
-$(ipydir)/astroquery: $(ipydir)/astropy \
- $(ipydir)/keyring \
- $(ipydir)/requests \
- $(tdir)/astroquery-$(astroquery-version).tar.gz
- $(call pybuild, tar xf, astroquery-$(astroquery-version), ,\
+$(ipydir)/astroquery-$(astroquery-version): \
+ $(ipydir)/astropy-$(astropy-version) \
+ $(ipydir)/keyring-$(keyring-version) \
+ $(ipydir)/requests-$(requests-version)
+ tarball=astroquery-$(astroquery-version).tar.gz
+ $(call import-source, $(astroquery-url), $(astroquery-checksum))
+ $(call pybuild, tar xf, astroquery-$(astroquery-version), , \
Astroquery $(astroquery-version))
-$(ipydir)/astropy: $(ipydir)/h5py \
- $(ibidir)/expat \
- $(ipydir)/scipy \
- $(ipydir)/numpy \
- $(ipydir)/pyyaml \
- $(ipydir)/html5lib \
- $(ipydir)/beautifulsoup4 \
- $(tdir)/astropy-$(astropy-version).tar.gz
+$(ipydir)/astropy-$(astropy-version): \
+ $(ipydir)/h5py-$(h5py-version) \
+ $(ibidir)/expat-$(expat-version) \
+ $(ipydir)/scipy-$(scipy-version) \
+ $(ipydir)/numpy-$(numpy-version) \
+ $(ipydir)/pyyaml-$(pyyaml-version) \
+ $(ipydir)/html5lib-$(html5lib-version) \
+ $(ipydir)/beautifulsoup4-$(beautifulsoup4-version)
+
+ # Download the source.
+ tarball=astropy-$(astropy-version).tar.gz
+ $(call import-source, $(astropy-url), $(astropy-checksum))
+
# Currently, when the Expat library is already built in a project
# (for example as a dependency of another program), Astropy's
# internal building of Expat will conflict with the project's. So
@@ -404,107 +195,133 @@ $(ipydir)/astropy: $(ipydir)/h5py \
echo "[build]" >> setup.cfg
echo "use_system_expat=1" >> setup.cfg
}
- $(call pybuild, tar xf, astropy-$(astropy-version)) \
- && cp $(dtexdir)/astropy.tex $(ictdir)/ \
- && echo "Astropy $(astropy-version) \citep{astropy2013,astropy2018}" > $@
-
-$(ipydir)/beautifulsoup4: $(ipydir)/soupsieve \
- $(tdir)/beautifulsoup4-$(beautifulsoup4-version).tar.gz
- $(call pybuild, tar xf, beautifulsoup4-$(beautifulsoup4-version), ,\
+ $(call pybuild, tar xf, astropy-$(astropy-version))
+ cp $(dtexdir)/astropy.tex $(ictdir)/
+ echo "Astropy $(astropy-version) \citep{astropy2013,astropy2018}" > $@
+
+$(ipydir)/beautifulsoup4-$(beautifulsoup4-version): \
+ $(ipydir)/soupsieve-$(soupsieve-version)
+ tarball=beautifulsoup4-$(beautifulsoup4-version).tar.gz
+ $(call import-source, $(beautifulsoup4-url), $(beautifulsoup4-checksum))
+ $(call pybuild, tar xf, beautifulsoup4-$(beautifulsoup4-version), , \
BeautifulSoup $(beautifulsoup4-version))
-$(ipydir)/certifi: $(ipydir)/setuptools \
- $(tdir)/certifi-$(certifi-version).tar.gz
- $(call pybuild, tar xf, certifi-$(certifi-version), ,\
+$(ipydir)/certifi-$(certifi-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=certifi-$(certifi-version).tar.gz
+ $(call import-source, $(certifi-url), $(certifi-checksum))
+ $(call pybuild, tar xf, certifi-$(certifi-version), , \
Certifi $(certifi-version))
-$(ipydir)/cffi: $(ibidir)/libffi \
- $(ipydir)/pycparser \
- $(tdir)/cffi-$(cffi-version).tar.gz
- $(call pybuild, tar xf, cffi-$(cffi-version), ,\
- cffi $(cffi-version))
-
-$(ipydir)/chardet: $(ipydir)/setuptools \
- $(tdir)/chardet-$(chardet-version).tar.gz
- $(call pybuild, tar xf, chardet-$(chardet-version), ,\
+$(ipydir)/cffi-$(cffi-version): \
+ $(ibidir)/libffi-$(libffi-version) \
+ $(ipydir)/pycparser-$(pycparser-version)
+ tarball=cffi-$(cffi-version).tar.gz
+ $(call import-source, $(cffi-url), $(cffi-checksum))
+ $(call pybuild, tar xf, cffi-$(cffi-version), ,cffi $(cffi-version))
+
+$(ipydir)/chardet-$(chardet-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=chardet-$(chardet-version).tar.gz
+ $(call import-source, $(chardet-url), $(chardet-checksum))
+ $(call pybuild, tar xf, chardet-$(chardet-version), , \
Chardet $(chardet-version))
-$(ipydir)/corner: $(ipydir)/matplotlib \
- $(tdir)/corner-$(corner-version).tar.gz
- $(call pybuild, tar xf, corner-$(corner-version), ,\
- Corner $(corner-version)) \
- && cp $(dtexdir)/corner.tex $(ictdir)/ \
- && echo "Corner $(corner-version) \citep{corner}" > $@
-
-$(ipydir)/cryptography: $(ipydir)/cffi \
- $(ipydir)/asn1crypto \
- $(tdir)/cryptography-$(cryptography-version).tar.gz
- $(call pybuild, tar xf, cryptography-$(cryptography-version), ,\
+$(ipydir)/corner-$(corner-version): $(ipydir)/matplotlib-$(matplotlib-version)
+ tarball=corner-$(corner-version).tar.gz
+ $(call import-source, $(corner-url), $(corner-checksum))
+ $(call pybuild, tar xf, corner-$(corner-version), , \
+ Corner $(corner-version))
+ cp $(dtexdir)/corner.tex $(ictdir)/
+ echo "Corner $(corner-version) \citep{corner}" > $@
+
+$(ipydir)/cryptography-$(cryptography-version): \
+ $(ipydir)/cffi-$(cffi-version) \
+ $(ipydir)/asn1crypto-$(asn1crypto-version)
+ tarball=cryptography-$(cryptography-version).tar.gz
+ $(call import-source, $(cryptography-url), $(cryptography-checksum))
+ $(call pybuild, tar xf, cryptography-$(cryptography-version), , \
Cryptography $(cryptography-version))
-$(ipydir)/cycler: $(ipydir)/six \
- $(tdir)/cycler-$(cycler-version).tar.gz
- $(call pybuild, tar xf, cycler-$(cycler-version), ,\
+$(ipydir)/cycler-$(cycler-version): $(ipydir)/six-$(six-version)
+ tarball=cycler-$(cycler-version).tar.gz
+ $(call import-source, $(cycler-url), $(cycler-checksum))
+ $(call pybuild, tar xf, cycler-$(cycler-version), , \
Cycler $(cycler-version))
-$(ipydir)/cython: $(ipydir)/setuptools \
- $(tdir)/cython-$(cython-version).tar.gz
- $(call pybuild, tar xf, Cython-$(cython-version)) \
- && cp $(dtexdir)/cython.tex $(ictdir)/ \
- && echo "Cython $(cython-version) \citep{cython2011}" > $@
-
-$(ipydir)/esutil: $(ipydir)/numpy \
- $(tdir)/esutil-$(esutil-version).tar.gz
- $(call pybuild, tar xf, esutil-$(esutil-version), ,\
+$(ipydir)/cython-$(cython-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=cython-$(cython-version).tar.gz
+ $(call import-source, $(cython-url), $(cython-checksum))
+ $(call pybuild, tar xf, Cython-$(cython-version))
+ cp $(dtexdir)/cython.tex $(ictdir)/
+ echo "Cython $(cython-version) \citep{cython2011}" > $@
+
+$(ipydir)/esutil-$(esutil-version): $(ipydir)/numpy-$(numpy-version)
+ tarball=esutil-$(esutil-version).tar.gz
+ $(call import-source, $(esutil-url), $(esutil-checksum))
+ $(call pybuild, tar xf, esutil-$(esutil-version), , \
esutil $(esutil-version))
-$(ipydir)/eigency: $(ibidir)/eigen \
- $(tdir)/eigency-$(eigency-version).tar.gz
- $(call pybuild, tar xf, eigency-$(eigency-version), ,\
+$(ipydir)/eigency-$(eigency-version): \
+ $(ipydir)/numpy-$(numpy-version) \
+ $(ibidir)/eigen-$(eigen-version) \
+ $(ipydir)/cython-$(cython-version)
+ tarball=eigency-$(eigency-version).tar.gz
+ $(call import-source, $(eigency-url), $(eigency-checksum))
+ $(call pybuild, tar xf, eigency-$(eigency-version), , \
eigency $(eigency-version))
-$(ipydir)/emcee: $(ipydir)/numpy \
- $(ipydir)/setuptools_scm \
- $(tdir)/emcee-$(emcee-version).tar.gz
- $(call pybuild, tar xf, emcee-$(emcee-version), ,\
+$(ipydir)/emcee-$(emcee-version): \
+ $(ipydir)/numpy-$(numpy-version) \
+ $(ipydir)/setuptools_scm-$(setuptools_scm-version)
+ tarball=emcee-$(emcee-version).tar.gz
+ $(call import-source, $(emcee-url), $(emcee-checksum))
+ $(call pybuild, tar xf, emcee-$(emcee-version), , \
emcee $(emcee-version))
-$(ipydir)/entrypoints: $(ipydir)/setuptools \
- $(tdir)/entrypoints-$(entrypoints-version).tar.gz
- $(call pybuild, tar xf, entrypoints-$(entrypoints-version), ,\
+$(ipydir)/entrypoints-$(entrypoints-version): \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=entrypoints-$(entrypoints-version).tar.gz
+ $(call import-source, $(entrypoints-url), $(entrypoints-checksum))
+ $(call pybuild, tar xf, entrypoints-$(entrypoints-version), , \
EntryPoints $(entrypoints-version))
-$(ipydir)/flake8: $(ipydir)/pyflakes \
- $(ipydir)/pycodestyle \
- $(tdir)/flake8-$(flake8-version).tar.gz
- $(call pybuild, tar xf, flake8-$(flake8-version), ,\
+$(ipydir)/flake8-$(flake8-version): \
+ $(ipydir)/pyflakes-$(pyflakes-version) \
+ $(ipydir)/pycodestyle-$(pycodestyle-version)
+ tarball=flake8-$(flake8-version).tar.gz
+ $(call import-source, $(flake8-url), $(flake8-checksum))
+ $(call pybuild, tar xf, flake8-$(flake8-version), , \
Flake8 $(flake8-version))
-$(ipydir)/future: $(ipydir)/setuptools \
- $(tdir)/future-$(future-version).tar.gz
- $(call pybuild, tar xf, future-$(future-version), ,\
+$(ipydir)/future-$(future-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=future-$(future-version).tar.gz
+ $(call import-source, $(future-url), $(future-checksum))
+ $(call pybuild, tar xf, future-$(future-version), , \
Future $(future-version))
-$(ipydir)/galsim: $(ipydir)/future \
- $(ipydir)/astropy \
- $(ipydir)/eigency \
- $(ipydir)/pybind11 \
- $(ipydir)/lsstdesccoord \
- $(tdir)/galsim-$(galsim-version).tar.gz
- $(call pybuild, tar xf, GalSim-$(galsim-version)) \
- && cp $(dtexdir)/galsim.tex $(ictdir)/ \
- && echo "Galsim $(galsim-version) \citep{galsim}" > $@
-
-$(ipydir)/h5py: $(ipydir)/six \
- $(ibidir)/hdf5 \
- $(ipydir)/numpy \
- $(ipydir)/cython \
- $(ipydir)/mpi4py \
- $(ipydir)/pypkgconfig \
- $(tdir)/h5py-$(h5py-version).tar.gz
- export HDF5_MPI=ON; \
- export HDF5_DIR=$(ildir); \
- $(call pybuild, tar xf, h5py-$(h5py-version), ,\
+$(ipydir)/galsim-$(galsim-version): \
+ $(ipydir)/future-$(future-version) \
+ $(ipydir)/astropy-$(astropy-version) \
+ $(ipydir)/eigency-$(eigency-version) \
+ $(ipydir)/pybind11-$(pybind11-version) \
+ $(ipydir)/lsstdesccoord-$(lsstdesccoord-version)
+ tarball=galsim-$(galsim-version).tar.gz
+ $(call import-source, $(galsim-url), $(galsim-checksum))
+ $(call pybuild, tar xf, GalSim-$(galsim-version))
+ cp $(dtexdir)/galsim.tex $(ictdir)/
+ echo "Galsim $(galsim-version) \citep{galsim}" > $@
+
+$(ipydir)/h5py-$(h5py-version): \
+ $(ipydir)/six-$(six-version) \
+ $(ibidir)/hdf5-$(hdf5-version) \
+ $(ipydir)/numpy-$(numpy-version) \
+ $(ipydir)/cython-$(cython-version) \
+ $(ipydir)/mpi4py-$(mpi4py-version) \
+ $(ipydir)/pypkgconfig-$(pypkgconfig-version)
+ export HDF5_MPI=ON
+ export HDF5_DIR=$(ildir)
+ tarball=h5py-$(h5py-version).tar.gz
+ $(call import-source, $(h5py-url), $(h5py-checksum))
+ $(call pybuild, tar xf, h5py-$(h5py-version), , \
h5py $(h5py-version))
# `healpy' is actually installed as part of the HEALPix package. It will be
@@ -514,231 +331,283 @@ $(ipydir)/h5py: $(ipydir)/six \
# and just ask for `healpy'. To avoid confusion in such cases, we'll just
# set `healpy' to be dependent on `healpix' and not download any tarball
# for it, or write anything in the final target.
-$(ipydir)/healpy: $(ibidir)/healpix
+$(ipydir)/healpy-$(healpy-version): $(ibidir)/healpix-$(healpy-version)
touch $@
-$(ipydir)/html5lib: $(ipydir)/six \
- $(ipydir)/webencodings \
- $(tdir)/html5lib-$(html5lib-version).tar.gz
- $(call pybuild, tar xf, html5lib-$(html5lib-version), ,\
+$(ipydir)/html5lib-$(html5lib-version): \
+ $(ipydir)/six-$(six-version) \
+ $(ipydir)/webencodings-$(webencodings-version)
+ tarball=html5lib-$(html5lib-version).tar.gz
+ $(call import-source, $(html5lib-url), $(html5lib-checksum))
+ $(call pybuild, tar xf, html5lib-$(html5lib-version), , \
HTML5lib $(html5lib-version))
-$(ipydir)/idna: $(ipydir)/setuptools \
- $(tdir)/idna-$(idna-version).tar.gz
- $(call pybuild, tar xf, idna-$(idna-version), ,\
+$(ipydir)/idna-$(idna-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=idna-$(idna-version).tar.gz
+ $(call import-source, $(idna-url), $(idna-checksum))
+ $(call pybuild, tar xf, idna-$(idna-version), , \
idna $(idna-version))
-$(ipydir)/jeepney: $(ipydir)/setuptools \
- $(tdir)/jeepney-$(jeepney-version).tar.gz
- $(call pybuild, tar xf, jeepney-$(jeepney-version), ,\
+$(ipydir)/jeepney-$(jeepney-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=jeepney-$(jeepney-version).tar.gz
+ $(call import-source, $(jeepney-url), $(jeepney-checksum))
+ $(call pybuild, tar xf, jeepney-$(jeepney-version), , \
Jeepney $(jeepney-version))
-$(ipydir)/keyring: $(ipydir)/entrypoints \
- $(ipydir)/secretstorage \
- $(ipydir)/setuptools_scm \
- $(tdir)/keyring-$(keyring-version).tar.gz
- $(call pybuild, tar xf, keyring-$(keyring-version), ,\
+$(ipydir)/keyring-$(keyring-version): \
+ $(ipydir)/entrypoints-$(entrypoints-version) \
+ $(ipydir)/secretstorage-$(secretstorage-version) \
+ $(ipydir)/setuptools_scm-$(setuptools_scm-version)
+ tarball=keyring-$(keyring-version).tar.gz
+ $(call import-source, $(keyring-url), $(keyring-checksum))
+ $(call pybuild, tar xf, keyring-$(keyring-version), , \
Keyring $(keyring-version))
-$(ipydir)/kiwisolver: $(ipydir)/setuptools \
- $(tdir)/kiwisolver-$(kiwisolver-version).tar.gz
- $(call pybuild, tar xf, kiwisolver-$(kiwisolver-version), ,\
+$(ipydir)/kiwisolver-$(kiwisolver-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=kiwisolver-$(kiwisolver-version).tar.gz
+ $(call import-source, $(kiwisolver-url), $(kiwisolver-checksum))
+ $(call pybuild, tar xf, kiwisolver-$(kiwisolver-version), , \
Kiwisolver $(kiwisolver-version))
-$(ipydir)/lmfit: $(ipydir)/six \
- $(ipydir)/scipy \
- $(ipydir)/emcee \
- $(ipydir)/corner \
- $(ipydir)/asteval \
- $(ipydir)/matplotlib \
- $(ipydir)/uncertainties \
- $(tdir)/lmfit-$(lmfit-version).tar.gz
- $(call pybuild, tar xf, lmfit-$(lmfit-version), ,\
+$(ipydir)/lmfit-$(lmfit-version): \
+ $(ipydir)/six-$(six-version) \
+ $(ipydir)/scipy-$(scipy-version) \
+ $(ipydir)/emcee-$(emcee-version) \
+ $(ipydir)/corner-$(corner-version) \
+ $(ipydir)/asteval-$(asteval-version) \
+ $(ipydir)/matplotlib-$(matplotlib-version) \
+ $(ipydir)/uncertainties-$(uncertainties-version)
+ tarball=lmfit-$(lmfit-version).tar.gz
+ $(call import-source, $(lmfit-url), $(lmfit-checksum))
+ $(call pybuild, tar xf, lmfit-$(lmfit-version), , \
LMFIT $(lmfit-version))
-$(ipydir)/lsstdesccoord: $(ipydir)/setuptools \
- $(tdir)/lsstdesccoord-$(lsstdesccoord-version).tar.gz
- $(call pybuild, tar xf, LSSTDESC.Coord-$(lsstdesccoord-version), ,\
+$(ipydir)/lsstdesccoord-$(lsstdesccoord-version): \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=lsstdesccoord-$(lsstdesccoord-version).tar.gz
+ $(call import-source, $(lsstdesccoord-url), $(lsstdesccoord-checksum))
+ $(call pybuild, tar xf, LSSTDESC.Coord-$(lsstdesccoord-version), , \
LSSTDESC.Coord $(lsstdesccoord-version))
-$(ipydir)/matplotlib: $(ipydir)/numpy \
- $(ipydir)/cycler \
- $(itidir)/texlive \
- $(ibidir)/freetype \
- $(ipydir)/pyparsing \
- $(ipydir)/kiwisolver \
- $(ibidir)/ghostscript \
- $(ibidir)/imagemagick \
- $(ipydir)/python-dateutil \
- $(tdir)/matplotlib-$(matplotlib-version).tar.gz
+$(ipydir)/matplotlib-$(matplotlib-version): \
+ $(itidir)/texlive \
+ $(ipydir)/numpy-$(numpy-version) \
+ $(ipydir)/cycler-$(cycler-version) \
+ $(ibidir)/freetype-$(freetype-version) \
+ $(ipydir)/pyparsing-$(pyparsing-version) \
+ $(ipydir)/kiwisolver-$(kiwisolver-version) \
+ $(ibidir)/ghostscript-$(ghostscript-version) \
+ $(ibidir)/imagemagick-$(imagemagick-version) \
+ $(ipydir)/python-dateutil-$(python-dateutil-version)
+
+ # Download the source.
+ tarball=matplotlib-$(matplotlib-version).tar.gz
+ $(call import-source, $(matplotlib-url), $(matplotlib-checksum))
+
# On Mac systems, the build complains about `clang' specific
# features, so we can't use our own GCC build here.
- if [ x$(on_mac_os) = xyes ]; then \
- export CC=clang; \
- export CXX=clang++; \
- fi; \
- $(call pybuild, tar xf, matplotlib-$(matplotlib-version)) \
- && cp $(dtexdir)/matplotlib.tex $(ictdir)/ \
- && echo "Matplotlib $(matplotlib-version) \citep{matplotlib2007}" > $@
-
-$(ipydir)/mpi4py: $(ibidir)/openmpi \
- $(ipydir)/setuptools \
- $(tdir)/mpi4py-$(mpi4py-version).tar.gz
- $(call pybuild, tar xf, mpi4py-$(mpi4py-version)) \
- && cp $(dtexdir)/mpi4py.tex $(ictdir)/ \
- && echo "mpi4py $(mpi4py-version) \citep{mpi4py2011}" > $@
-
-$(ipydir)/mpmath: $(ipydir)/setuptools \
- $(tdir)/mpmath-$(mpmath-version).tar.gz
- $(call pybuild, tar xf, mpmath-$(mpmath-version), ,\
+ if [ x$(on_mac_os) = xyes ]; then
+ export CC=clang
+ export CXX=clang++
+ fi
+ $(call pybuild, tar xf, matplotlib-$(matplotlib-version))
+ cp $(dtexdir)/matplotlib.tex $(ictdir)/
+ echo "Matplotlib $(matplotlib-version) \citep{matplotlib2007}" > $@
+
+$(ipydir)/mpi4py-$(mpi4py-version): \
+ $(ibidir)/openmpi-$(openmpi-version) \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=mpi4py-$(mpi4py-version).tar.gz
+ $(call import-source, $(mpi4py-url), $(mpi4py-checksum))
+ $(call pybuild, tar xf, mpi4py-$(mpi4py-version))
+ cp $(dtexdir)/mpi4py.tex $(ictdir)/
+ echo "mpi4py $(mpi4py-version) \citep{mpi4py2011}" > $@
+
+$(ipydir)/mpmath-$(mpmath-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=mpmath-$(mpmath-version).tar.gz
+ $(call import-source, $(mpmath-url), $(mpmath-checksum))
+ $(call pybuild, tar xf, mpmath-$(mpmath-version), , \
mpmath $(mpmath-version))
-$(ipydir)/numpy: $(ibidir)/unzip \
- $(ibidir)/openblas \
- $(ipydir)/setuptools \
- $(tdir)/numpy-$(numpy-version).zip
- if [ x$(on_mac_os) = xyes ]; then \
- export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \
- else \
- export LDFLAGS="$(LDFLAGS) -shared"; \
- fi; \
- export CFLAGS="--std=c99 $$CFLAGS"; \
- conf="$$(pwd)/reproduce/software/config/numpy-scipy.cfg"; \
+$(ipydir)/numpy-$(numpy-version): \
+ $(ibidir)/unzip-$(unzip-version) \
+ $(ibidir)/openblas-$(openblas-version) \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=numpy-$(numpy-version).zip
+ $(call import-source, $(numpy-url), $(numpy-checksum))
+ if [ x$(on_mac_os) = xyes ]; then
+ export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"
+ else
+ export LDFLAGS="$(LDFLAGS) -shared"
+ fi
+ export CFLAGS="--std=c99 $$CFLAGS"
+ conf="$$(pwd)/reproduce/software/config/numpy-scipy.cfg"
$(call pybuild, unzip, numpy-$(numpy-version),$$conf, \
- Numpy $(numpy-version)) \
- && cp $(dtexdir)/numpy.tex $(ictdir)/ \
- && echo "Numpy $(numpy-version) \citep{numpy2011}" > $@
-
-$(ipydir)/pexpect: $(ipydir)/setuptools \
- $(tdir)/pexpect-$(pexpect-version).tar.gz
- $(call pybuild, tar xf, pexpect-$(pexpect-version), ,\
+ Numpy $(numpy-version))
+ cp $(dtexdir)/numpy.tex $(ictdir)/
+ echo "Numpy $(numpy-version) \citep{numpy2011}" > $@
+
+$(ipydir)/pexpect-$(pexpect-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=pexpect-$(pexpect-version).tar.gz
+ $(call import-source, $(pexpect-url), $(pexpect-checksum))
+ $(call pybuild, tar xf, pexpect-$(pexpect-version), , \
Pexpect $(pexpect-version))
-$(ibidir)/pip3: $(ipydir)/setuptools \
- $(tdir)/pip-$(pip-version).tar.gz
- $(call pybuild, tar xf, pip-$(pip-version), ,\
+$(ipydir)/pip-$(pip-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=pip-$(pip-version).tar.gz
+ $(call import-source, $(pip-url), $(pip-checksum))
+ $(call pybuild, tar xf, pip-$(pip-version), , \
PiP $(pip-version))
-$(ipydir)/pycodestyle: $(ipydir)/setuptools \
- $(tdir)/pycodestyle-$(pycodestyle-version).tar.gz
- $(call pybuild, tar xf, pycodestyle-$(pycodestyle-version), ,\
+$(ipydir)/pycodestyle-$(pycodestyle-version): \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=pycodestyle-$(pycodestyle-version).tar.gz
+ $(call import-source, $(pycodestyle-url), $(pycodestyle-checksum))
+ $(call pybuild, tar xf, pycodestyle-$(pycodestyle-version), , \
pycodestyle $(pycodestyle-version))
-$(ipydir)/pybind11: $(ibidir)/eigen \
- $(ibidir)/boost \
- $(ipydir)/setuptools \
- $(tdir)/pybind11-$(pybind11-version).tar.gz
+$(ipydir)/pybind11-$(pybind11-version): \
+ $(ibidir)/eigen-$(eigen-version) \
+ $(ibidir)/boost-$(boost-version) \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=pybind11-$(pybind11-version).tar.gz
+ $(call import-source, $(pybind11-url), $(pybind11-checksum))
pyhook_after() {
cp -r include/pybind11 $(iidir)/python$(python-major-version)m/
}
- $(call pybuild, tar xf, pybind11-$(pybind11-version), ,\
+ $(call pybuild, tar xf, pybind11-$(pybind11-version), , \
pybind11 $(pybind11-version))
-$(ipydir)/pycparser: $(ipydir)/setuptools \
- $(tdir)/pycparser-$(pycparser-version).tar.gz
- $(call pybuild, tar xf, pycparser-$(pycparser-version), ,\
+$(ipydir)/pycparser-$(pycparser-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=pycparser-$(pycparser-version).tar.gz
+ $(call import-source, $(pycparser-url), $(pycparser-checksum))
+ $(call pybuild, tar xf, pycparser-$(pycparser-version), , \
pycparser $(pycparser-version))
-$(ipydir)/pyflakes: $(ipydir)/setuptools \
- $(tdir)/pyflakes-$(pyflakes-version).tar.gz
- $(call pybuild, tar xf, pyflakes-$(pyflakes-version), ,\
+$(ipydir)/pyflakes-$(pyflakes-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=pyflakes-$(pyflakes-version).tar.gz
+ $(call import-source, $(pyflakes-url), $(pyflakes-checksum))
+ $(call pybuild, tar xf, pyflakes-$(pyflakes-version), , \
pyflakes $(pyflakes-version))
-$(ipydir)/pyparsing: $(ipydir)/setuptools \
- $(tdir)/pyparsing-$(pyparsing-version).tar.gz
- $(call pybuild, tar xf, pyparsing-$(pyparsing-version), ,\
+$(ipydir)/pyparsing-$(pyparsing-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=pyparsing-$(pyparsing-version).tar.gz
+ $(call import-source, $(pyparsing-url), $(pyparsing-checksum))
+ $(call pybuild, tar xf, pyparsing-$(pyparsing-version), , \
PyParsing $(pyparsing-version))
-$(ipydir)/pypkgconfig: $(ipydir)/setuptools \
- $(tdir)/pkgconfig-$(pypkgconfig-version).tar.gz
+$(ipydir)/pypkgconfig-$(pypkgconfig-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=pkgconfig-$(pypkgconfig-version).tar.gz
+ $(call import-source, $(pypkgconfig-url), $(pypkgconfig-checksum))
$(call pybuild, tar xf, pkgconfig-$(pypkgconfig-version), ,
pkgconfig $(pypkgconfig-version))
-$(ipydir)/python-dateutil: $(ipydir)/six \
- $(ipydir)/setuptools_scm \
- $(tdir)/python-dateutil-$(python-dateutil-version).tar.gz
- $(call pybuild, tar xf, python-dateutil-$(python-dateutil-version), ,\
+$(ipydir)/python-dateutil-$(python-dateutil-version): \
+ $(ipydir)/six-$(six-version) \
+ $(ipydir)/setuptools_scm-$(setuptools_scm-version)
+ tarball=python-dateutil-$(python-dateutil-version).tar.gz
+ $(call import-source, $(python-dateutil-url), $(python-dateutil-checksum))
+ $(call pybuild, tar xf, python-dateutil-$(python-dateutil-version), , \
python-dateutil $(python-dateutil-version))
-$(ipydir)/pyyaml: $(ibidir)/yaml \
- $(ipydir)/cython \
- $(tdir)/pyyaml-$(pyyaml-version).tar.gz
- $(call pybuild, tar xf, PyYAML-$(pyyaml-version), ,\
+$(ipydir)/pyyaml-$(pyyaml-version): \
+ $(ibidir)/yaml-$(yaml-version) \
+ $(ipydir)/cython-$(cython-version)
+ tarball=pyyaml-$(pyyaml-version).tar.gz
+ $(call import-source, $(pyyaml-url), $(pyyaml-checksum))
+ $(call pybuild, tar xf, PyYAML-$(pyyaml-version), , \
PyYAML $(pyyaml-version))
-$(ipydir)/requests: $(ipydir)/idna \
- $(ipydir)/numpy \
- $(ipydir)/certifi \
- $(ipydir)/chardet \
- $(ipydir)/urllib3 \
- $(tdir)/requests-$(requests-version).tar.gz
- $(call pybuild, tar xf, requests-$(requests-version), ,\
+$(ipydir)/requests-$(requests-version): $(ipydir)/idna-$(idna-version) \
+ $(ipydir)/numpy-$(numpy-version) \
+ $(ipydir)/certifi-$(certifi-version) \
+ $(ipydir)/chardet-$(chardet-version) \
+ $(ipydir)/urllib3-$(urllib3-version)
+ tarball=requests-$(requests-version).tar.gz
+ $(call import-source, $(requests-url), $(requests-checksum))
+ $(call pybuild, tar xf, requests-$(requests-version), , \
Requests $(requests-version))
-$(ipydir)/scipy: $(ipydir)/numpy \
- $(tdir)/scipy-$(scipy-version).tar.gz
- if [ x$(on_mac_os) = xyes ]; then \
- export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"; \
- else \
- export LDFLAGS="$(LDFLAGS) -shared"; \
- fi; \
- conf="$$(pwd)/reproduce/software/config/numpy-scipy.cfg"; \
- $(call pybuild, tar xf, scipy-$(scipy-version),$$conf) \
- && cp $(dtexdir)/scipy.tex $(ictdir)/ \
- && echo "Scipy $(scipy-version) \citep{scipy2007,scipy2011}" > $@
-
-$(ipydir)/secretstorage: $(ipydir)/jeepney \
- $(ipydir)/cryptography \
- $(tdir)/secretstorage-$(secretstorage-version).tar.gz
- $(call pybuild, tar xf, SecretStorage-$(secretstorage-version), ,\
+$(ipydir)/scipy-$(scipy-version): $(ipydir)/numpy-$(numpy-version)
+ tarball=scipy-$(scipy-version).tar.gz
+ $(call import-source, $(scipy-url), $(scipy-checksum))
+ if [ x$(on_mac_os) = xyes ]; then
+ export LDFLAGS="$(LDFLAGS) -undefined dynamic_lookup -bundle"
+ else
+ export LDFLAGS="$(LDFLAGS) -shared"
+ fi
+ conf="$$(pwd)/reproduce/software/config/numpy-scipy.cfg"
+ $(call pybuild, tar xf, scipy-$(scipy-version),$$conf)
+ cp $(dtexdir)/scipy.tex $(ictdir)/
+ echo "Scipy $(scipy-version) \citep{scipy2007,scipy2011}" > $@
+
+$(ipydir)/secretstorage-$(secretstorage-version): \
+ $(ipydir)/jeepney-$(jeepney-version) \
+ $(ipydir)/cryptography-$(cryptography-version)
+ tarball=secretstorage-$(secretstorage-version).tar.gz
+ $(call import-source, $(secretstorage-url), $(secretstorage-checksum))
+ $(call pybuild, tar xf, SecretStorage-$(secretstorage-version), , \
SecretStorage $(secretstorage-version))
-$(ipydir)/setuptools: $(ibidir)/unzip \
- $(ibidir)/python \
- $(tdir)/setuptools-$(setuptools-version).zip
- $(call pybuild, unzip, setuptools-$(setuptools-version), ,\
+$(ipydir)/setuptools-$(setuptools-version): \
+ $(ibidir)/unzip-$(unzip-version) \
+ $(ibidir)/python-$(python-version)
+ tarball=setuptools-$(setuptools-version).zip
+ $(call import-source, $(setuptools-url), $(setuptools-checksum))
+ $(call pybuild, unzip, setuptools-$(setuptools-version), , \
Setuptools $(setuptools-version))
-$(ipydir)/setuptools_scm: $(ipydir)/setuptools \
- $(tdir)/setuptools_scm-$(setuptools_scm-version).tar.gz
- $(call pybuild, tar xf, setuptools_scm-$(setuptools_scm-version), ,\
+$(ipydir)/setuptools_scm-$(setuptools_scm-version): \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=setuptools_scm-$(setuptools_scm-version).tar.gz
+ $(call import-source, $(setuptools_scm-url), $(setuptools_scm-checksum))
+ $(call pybuild, tar xf, setuptools_scm-$(setuptools_scm-version), , \
Setuptools-scm $(setuptools_scm-version))
-$(ipydir)/sip_tpv: $(ipydir)/sympy \
- $(ipydir)/astropy \
- $(tdir)/sip_tpv-$(sip_tpv-version).tar.gz
- $(call pybuild, tar xf, sip_tpv-$(sip_tpv-version), ,) \
- && cp $(dtexdir)/sip_tpv.tex $(ictdir)/ \
- && echo "sip_tpv $(sip_tpv-version) \citep{sip-tpv}" > $@
+$(ipydir)/sip_tpv-$(sip_tpv-version): \
+ $(ipydir)/sympy-$(sympy-version) \
+ $(ipydir)/astropy-$(astropy-version)
+ tarball=sip_tpv-$(sip_tpv-version).tar.gz
+ $(call import-source, $(sip_tpv-url), $(sip_tpv-checksum))
+ $(call pybuild, tar xf, sip_tpv-$(sip_tpv-version), ,)
+ cp $(dtexdir)/sip_tpv.tex $(ictdir)/
+ echo "sip_tpv $(sip_tpv-version) \citep{sip-tpv}" > $@
-$(ipydir)/six: $(ipydir)/setuptools \
- $(tdir)/six-$(six-version).tar.gz
- $(call pybuild, tar xf, six-$(six-version), ,\
+$(ipydir)/six-$(six-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=six-$(six-version).tar.gz
+ $(call import-source, $(six-url), $(six-checksum))
+ $(call pybuild, tar xf, six-$(six-version), , \
Six $(six-version))
-$(ipydir)/soupsieve: $(ipydir)/setuptools \
- $(tdir)/soupsieve-$(soupsieve-version).tar.gz
- $(call pybuild, tar xf, soupsieve-$(soupsieve-version), ,\
+$(ipydir)/soupsieve-$(soupsieve-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=soupsieve-$(soupsieve-version).tar.gz
+ $(call import-source, $(soupsieve-url), $(soupsieve-checksum))
+ $(call pybuild, tar xf, soupsieve-$(soupsieve-version), , \
SoupSieve $(soupsieve-version))
-$(ipydir)/sympy: $(ipydir)/mpmath \
- $(tdir)/sympy-$(sympy-version).tar.gz
- $(call pybuild, tar xf, sympy-$(sympy-version), ,) \
- && cp $(dtexdir)/sympy.tex $(ictdir)/ \
- && echo "SymPy $(sympy-version) \citep{sympy}" > $@
-
-$(ipydir)/uncertainties: $(ipydir)/numpy \
- $(tdir)/uncertainties-$(uncertainties-version).tar.gz
- $(call pybuild, tar xf, uncertainties-$(uncertainties-version), ,\
+$(ipydir)/sympy-$(sympy-version): $(ipydir)/mpmath-$(mpmath-version)
+ tarball=sympy-$(sympy-version).tar.gz
+ $(call import-source, $(sympy-url), $(sympy-checksum))
+ $(call pybuild, tar xf, sympy-$(sympy-version), ,)
+ cp $(dtexdir)/sympy.tex $(ictdir)/
+ echo "SymPy $(sympy-version) \citep{sympy}" > $@
+
+$(ipydir)/uncertainties-$(uncertainties-version): $(ipydir)/numpy-$(numpy-version)
+ tarball=uncertainties-$(uncertainties-version).tar.gz
+ $(call import-source, $(uncertainties-url), $(uncertainties-checksum))
+ $(call pybuild, tar xf, uncertainties-$(uncertainties-version), , \
uncertainties $(uncertainties-version))
-$(ipydir)/urllib3: $(ipydir)/setuptools \
- $(tdir)/urllib3-$(urllib3-version).tar.gz
- $(call pybuild, tar xf, urllib3-$(urllib3-version), ,\
+$(ipydir)/urllib3-$(urllib3-version): $(ipydir)/setuptools-$(setuptools-version)
+ tarball=urllib3-$(urllib3-version).tar.gz
+ $(call import-source, $(urllib3-url), $(urllib3-checksum))
+ $(call pybuild, tar xf, urllib3-$(urllib3-version), , \
Urllib3 $(urllib3-version))
-$(ipydir)/webencodings: $(ipydir)/setuptools \
- $(tdir)/webencodings-$(webencodings-version).tar.gz
- $(call pybuild, tar xf, webencodings-$(webencodings-version), ,\
+$(ipydir)/webencodings-$(webencodings-version): \
+ $(ipydir)/setuptools-$(setuptools-version)
+ tarball=webencodings-$(webencodings-version).tar.gz
+ $(call import-source, $(webencodings-url), $(webencodings-checksum))
+ $(call pybuild, tar xf, webencodings-$(webencodings-version), , \
Webencodings $(webencodings-version))
diff --git a/reproduce/software/shell/configure.sh b/reproduce/software/shell/configure.sh
index b2e3979..38dcf7f 100755
--- a/reproduce/software/shell/configure.sh
+++ b/reproduce/software/shell/configure.sh
@@ -153,6 +153,38 @@ check_permission ()
+# Check if there is enough free space available in the build directory
+# --------------------------------------------------------------------
+#
+# Use this function to check if there is enough free space in a
+# directory. It is meant to be passed to the 'if' statement in the
+# shell. So if there is enough space, it returns 0 (which translates to
+# TRUE), otherwise, the funcion returns 1 (which translates to FALSE).
+#
+# Expects to be called with two arguments, the first is the threshold and
+# the second is the desired directory. The 'df' function checks the given
+# path to see where it is mounted on, and how much free space there is on
+# that partition (in units of 1024 bytes).
+#
+# synopsis:
+# $ free_space_warning <acceptable_threshold> <path-to-check>
+#
+# example:
+# To check if there is 5MB of space available in /path/to/check
+# call the command with arguments as shown below:
+# $ free_space_warning 5000 /path/to/check/free/space
+free_space_warning()
+{
+ fs_threshold=$1
+ fs_destpath=$2
+ return $(df $fs_destpath \
+ | awk 'FNR==2 {if($4>'$fs_threshold') print 1; \
+ else print 0; }')
+}
+
+
+
+
# Check for C/C++ compilers
# -------------------------
@@ -729,14 +761,14 @@ EOF
bdir=$(absolute_dir $build_dir)
rm -rf $build_dir/$junkname
else
- echo " ** Can't write in '$build_dir'"; echo
+ echo " ** Can't write in '$build_dir'";
fi
else
if mkdir $build_dir 2> /dev/null; then
instring="the newly created"
bdir=$(absolute_dir $build_dir)
else
- echo " ** Can't create '$build_dir'"; echo
+ echo " ** Can't create '$build_dir'";
fi
fi
@@ -759,8 +791,19 @@ EOF
# file permissions.
if ! [ x"$bdir" = x ]; then
if ! $(check_permission $bdir); then
+ # Unable to handle permissions well
bdir=
echo " ** File permissions can't be modified in this directory"
+ else
+ # Able to handle permissions, now check for 5GB free space
+ # in the given partition (note that the number is in units
+ # of 1024 bytes). If this is not the case, print a warning.
+ if $(free_space_warning 5000000 $bdir); then
+ echo " !! LESS THAN 5GB FREE SPACE IN: $bdir"
+ echo " !! We recommend choosing another partition."
+ echo " !! Build will continue in 5 seconds..."
+ sleep 5
+ fi
fi
fi
@@ -1113,7 +1156,7 @@ ln -s $instdir .local
ln -s $texdir tex/build
ln -s $tikzdir tex/tikz
# --------- Delete for no Gnuastro ---------
-ln -s $topdir/reproduce/software/config/gnuastro .gnuastro
+ln -s $topdir/reproduce/analysis/config/gnuastro .gnuastro
# ------------------------------------------
@@ -1250,6 +1293,48 @@ fi
+# Find Zenodo URL for software downloading
+# ----------------------------------------
+#
+# All free-software source tarballs that are potentially used in Maneage
+# are also archived in Zenodo with a certain concept-DOI. A concept-DOI is
+# a Zenodo terminology, meaning a fixed DOI of the project (that can have
+# many sub-DOIs for different versions). By default, the concept-DOI points
+# to the most recently uploaded version. However, the concept-DOI itself is
+# not directly usable for downloading files. The concept-DOI will just take
+# us to the top webpage of the most recent version of the upload.
+#
+# The problem is that as more software are added (as new Zenodo versions),
+# the most recent Zenodo-URL that the concept-DOI points to, also
+# changes. The most reliable solution was found to be the tiny script below
+# which will download the DOI-resolved webpage, and extract the Zenodo-URL
+# of the most recent version from there (using the 'coreutils' tarball as
+# an example, the directory part of the URL for all the other software are
+# the same).
+user_backup_urls=""
+zenodocheck=.build/software/zenodo-check.html
+if $downloader $zenodocheck https://doi.org/10.5281/zenodo.3883409; then
+ zenodourl=$(sed -n -e'/coreutils/p' $zenodocheck \
+ | sed -n -e'/http/p' \
+ | tr ' ' '\n' \
+ | grep http \
+ | sed -e 's/href="//' -e 's|/coreutils| |' \
+ | awk 'NR==1{print $1}')
+else
+ zenodourl=""
+fi
+rm -f $zenodocheck
+
+# Add the Zenodo URL to the user's given back software URLs. Since the user
+# can specify 'user_backup_urls' (not yet implemented as an option in
+# './project'), we'll give preference to their specified servers, then add
+# the Zenodo URL afterwards.
+user_backup_urls="$user_backup_urls $zenodourl"
+
+
+
+
+
# Build core tools for project
# ----------------------------
#
@@ -1258,7 +1343,7 @@ fi
# (minimal Bash-like shell) and Flock (to lock files and enable serial
# download).
./reproduce/software/shell/pre-make-build.sh \
- "$bdir" "$ddir" "$downloader"
+ "$bdir" "$ddir" "$downloader" "$user_backup_urls"
@@ -1272,6 +1357,7 @@ fi
# tools, but we have to be very portable (and use minimal features in all).
echo; echo "Building necessary software (if necessary)..."
.local/bin/make -k -f reproduce/software/make/basic.mk \
+ user_backup_urls="$user_backup_urls" \
sys_library_path=$sys_library_path \
rpath_command=$rpath_command \
static_build=$static_build \
@@ -1293,20 +1379,22 @@ echo; echo "Building necessary software (if necessary)..."
# script. Bash and Make were the tools we need to run Makefiles, so we had
# to build them in this script. But after this, we can rely on Makefiles.
if [ $jobs = 0 ]; then
- numthreads=$($instdir/bin/nproc --all)
+ numthreads=$(.local/bin/nproc --all)
else
numthreads=$jobs
fi
.local/bin/env -i HOME=$bdir \
- .local/bin/make -k -f reproduce/software/make/high-level.mk \
- sys_library_path=$sys_library_path \
- rpath_command=$rpath_command \
- static_build=$static_build \
- numthreads=$numthreads \
- on_mac_os=$on_mac_os \
- sys_cpath=$sys_cpath \
- host_cc=$host_cc \
- -j$numthreads
+ .local/bin/make -k -f reproduce/software/make/high-level.mk \
+ user_backup_urls="$user_backup_urls" \
+ sys_library_path=$sys_library_path \
+ rpath_command=$rpath_command \
+ all_highlevel=$all_highlevel \
+ static_build=$static_build \
+ numthreads=$numthreads \
+ on_mac_os=$on_mac_os \
+ sys_cpath=$sys_cpath \
+ host_cc=$host_cc \
+ -j$numthreads
@@ -1400,26 +1488,27 @@ prepare_name_version ()
fi
}
+# Import the context/sentences for placing between the list of software
+# names during their acknowledgment.
+. $cdir/software_acknowledge_context.sh
+
# Report the different software in separate contexts (separating Python and
# TeX packages from the C/C++ programs and libraries).
proglibs=$(prepare_name_version $verdir/proglib/*)
pymodules=$(prepare_name_version $verdir/python/*)
texpkg=$(prepare_name_version $verdir/tex/texlive)
-# Write them as one paragraph for LaTeX.
+# Acknowledge these software packages in a LaTeX paragraph.
pkgver=$mtexdir/dependencies.tex
-.local/bin/echo "This research was done with the following free" > $pkgver
-.local/bin/echo "software programs and libraries: $proglibs." >> $pkgver
+
+# Add the text to the ${pkgver} file.
+.local/bin/echo "$thank_software_introduce " > $pkgver
+.local/bin/echo "$thank_progs_libs $proglibs. " >> $pkgver
if [ x"$pymodules" != x ]; then
- .local/bin/echo "Within Python, the following modules" >> $pkgver
- echo "were used: $pymodules." >> $pkgver
+ .local/bin/echo "$thank_python $pymodules. " >> $pkgver
fi
-.local/bin/echo "The \LaTeX{} source of the paper was compiled" >> $pkgver
-.local/bin/echo "to make the PDF using the following packages:" >> $pkgver
-.local/bin/echo "$texpkg. We are very grateful to all their" >> $pkgver
-.local/bin/echo "creators for freely providing this necessary" >> $pkgver
-.local/bin/echo "infrastructure. This research (and many " >> $pkgver
-.local/bin/echo "others) would not be possible without them." >> $pkgver
+.local/bin/echo "$thank_latex $texpkg. " >> $pkgver
+.local/bin/echo "$thank_software_conclude" >> $pkgver
# Prepare the BibTeX entries for the used software (if there are any).
hasentry=0
diff --git a/reproduce/software/shell/pre-make-build.sh b/reproduce/software/shell/pre-make-build.sh
index e2ac789..05a4143 100755
--- a/reproduce/software/shell/pre-make-build.sh
+++ b/reproduce/software/shell/pre-make-build.sh
@@ -34,6 +34,7 @@ set -e
bdir=$1
ddir=$2
downloader="$3"
+user_backup_urls="$4"
@@ -51,6 +52,7 @@ downloadwrapper=reproduce/analysis/bash/download-multi-try
# Derived directories
bindir=$instdir/bin
+urlfile=$confdir/urls.conf
versionsfile=$confdir/versions.conf
checksumsfile=$confdir/checksums.conf
backupfile=$confdir/servers-backup.conf
@@ -65,8 +67,18 @@ export PATH="$bindir:$PATH"
-# Load the backup servers
-backupservers=$(awk '!/^#/{printf "%s ", $1}' $backupfile)
+# Load the backup servers, but separate the first one.
+backupservers=""
+topbackupserver=""
+maneage_backup_urls=$(awk '!/^#/{printf "%s ", $1}' $backupfile)
+backupservers_all="$user_backup_urls $maneage_backup_urls"
+for b in $backupservers_all; do
+ if [ x$topbackupserver = x ]; then
+ topbackupserver=$b
+ else
+ backupservers="$backupservers $b"
+ fi
+done
@@ -83,12 +95,21 @@ download_tarball() {
else
ucname=$tardir/$tarball.unchecked
+ # If the URL is empty, use the top backup server
+ if [ x$w = x ]; then
+ bservers="$backupservers"
+ tarballurl=$topbackupserver/$tarball
+ else
+ bservers="$backupservers_all"
+ tarballurl=$url/$tarball
+ fi
+
# See if it is in the input software directory.
if [ -f "$ddir/$tarball" ]; then
cp $ddir/$tarball $ucname
else
- $downloadwrapper "$downloader" nolock $url/$tarball $ucname \
- "$backupservers"
+ $downloadwrapper "$downloader" nolock $tarballurl $ucname \
+ "$bservers"
fi
# Make sure this is the correct tarball.
@@ -119,10 +140,14 @@ download_tarball() {
-# Build the program from the tarball
+# Build the program from the tarball. This function takes one argument
+# which is the configure-time options.
build_program() {
if ! [ -f $ibidir/$progname ]; then
+ # Options
+ configoptions=$1
+
# Go into the temporary building directory.
cd $tmpblddir
unpackdir="$progname"-"$version"
@@ -140,13 +165,31 @@ build_program() {
intar=$tardir/$tarball
fi
- # Unpack the tarball and build the program.
+ # Unpack the tarball and go into it.
tar xf $intar
if [ x$intarrm = x1 ]; then rm $intar; fi
cd $unpackdir
- ./configure --prefix=$instdir
- make
- make install
+
+ # build the project, either with Make and either without it.
+ if [ x$progname = xlzip ]; then
+ ./configure --build --check --installdir=$instdir/bin $configoptions
+ else
+ # All others accept the configure script.
+ ./configure --prefix=$instdir $configoptions
+
+ # To build GNU Make, we don't want to assume the existance of a
+ # Make program, so we use its 'build.sh' script and its own built
+ # 'make' program to install itself.
+ if [ x$progname = xmake ]; then
+ /bin/sh build.sh
+ ./make install
+ else
+ make
+ make install
+ fi
+ fi
+
+ # Clean up the source directory
cd $topdir
rm -rf $tmpblddir/$unpackdir
echo "$progname_tex $version" > $ibidir/$progname
@@ -167,7 +210,7 @@ build_program() {
# won't rely on the host's compression tools at all.
progname="lzip"
progname_tex="Lzip"
-url=http://akhlaghi.org/src
+url=$(awk '/^'$progname'-url/{print $3}' $urlfile)
version=$(awk '/^'$progname'-version/{print $3}' $versionsfile)
tarball=$progname-$version.tar
download_tarball
@@ -180,19 +223,17 @@ build_program
# GNU Make
# --------
#
-# The job orchestrator of Maneage is GNU Make. Although it is not
-# impossible to account for all the differences between various Make
-# implementations, its much easier (for reading the code and
-# writing/debugging it) if we can count on a special implementation. So
-# before going into the complex job orchestration in building high-level
-# software, we start by building GNU Make.
+# The job orchestrator of Maneage is GNU Make. The
+# '--disable-dependency-tracking' configure-time option is necessary so
+# Make doesn't check for an existing 'make' implementation (recall that we
+# aren't assuming any 'make' on the host).
progname="make"
progname_tex="GNU Make"
-url=http://akhlaghi.org/src
+url=$(awk '/^'$progname'-url/{print $3}' $urlfile)
version=$(awk '/^'$progname'-version/{print $3}' $versionsfile)
tarball=$progname-$version.tar.lz
download_tarball
-build_program
+build_program --disable-dependency-tracking
@@ -206,7 +247,7 @@ build_program
# (which builds GNU Bash).
progname="dash"
progname_tex="Dash"
-url=http://akhlaghi.org/src
+url=$(awk '/^'$progname'-url/{print $3}' $urlfile)
version=$(awk '/^'$progname'-version/{print $3}' $versionsfile)
tarball=$progname-$version.tar.lz
download_tarball
@@ -235,7 +276,7 @@ fi
# many simultaneous download commands are called.
progname="flock"
progname_tex="Discoteq flock"
-url=http://akhlaghi.org/src
+url=$(awk '/^'$progname'-url/{print $3}' $urlfile)
version=$(awk '/^'$progname'-version/{print $3}' $versionsfile)
tarball=$progname-$version.tar.lz
download_tarball
diff --git a/reproduce/software/shell/run-parts.in b/reproduce/software/shell/run-parts.in
new file mode 100755
index 0000000..9213585
--- /dev/null
+++ b/reproduce/software/shell/run-parts.in
@@ -0,0 +1,71 @@
+#!MANEAGESHELL
+# run-parts: Runs all the scripts found in a directory.
+# from Slackware, by Patrick J. Volkerding with ideas borrowed
+# from the Red Hat and Debian versions of this utility.
+#
+# USAGE IN MANEAGE: this script is built with the 'libpaper' package.
+#
+# The original file was taken from Linux From Scratch:
+# http://www.linuxfromscratch.org/blfs/view/svn/general/libpaper.html
+# However, it didn't have a copyright statement. So one is being added
+# here.
+#
+# Copyright (C) 2020 Authors mentioned above.
+# Copyright (C) 2020 Mohammad Akhlaghi <mohammad@akhlaghi.org>
+#
+# This script is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This script is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this script. If not, see <http://www.gnu.org/licenses/>.
+
+# keep going when something fails
+set +e
+
+if [ $# -lt 1 ]; then
+ echo "Usage: run-parts <directory>"
+ exit 1
+fi
+
+if [ ! -d $1 ]; then
+ echo "Not a directory: $1"
+ echo "Usage: run-parts <directory>"
+ exit 1
+fi
+
+# There are several types of files that we would like to
+# ignore automatically, as they are likely to be backups
+# of other scripts:
+IGNORE_SUFFIXES="~ ^ , .bak .new .rpmsave .rpmorig .rpmnew .swp"
+
+# Main loop:
+for SCRIPT in $1/* ; do
+ # If this is not a regular file, skip it:
+ if [ ! -f $SCRIPT ]; then
+ continue
+ fi
+ # Determine if this file should be skipped by suffix:
+ SKIP=false
+ for SUFFIX in $IGNORE_SUFFIXES ; do
+ if [ ! "$(basename $SCRIPT $SUFFIX)" = "$(basename $SCRIPT)" ]; then
+ SKIP=true
+ break
+ fi
+ done
+ if [ "$SKIP" = "true" ]; then
+ continue
+ fi
+ # If we've made it this far, then run the script if it's executable:
+ if [ -x $SCRIPT ]; then
+ $SCRIPT || echo "$SCRIPT failed."
+ fi
+done
+
+exit 0