diff options
Diffstat (limited to 'reproduce/software/config')
| -rw-r--r-- | reproduce/software/config/checksums.conf | 12 | ||||
| -rwxr-xr-x | reproduce/software/config/software_acknowledge_context.sh | 112 | ||||
| -rw-r--r-- | reproduce/software/config/urls.conf | 159 | ||||
| -rw-r--r-- | reproduce/software/config/versions.conf | 93 |
4 files changed, 327 insertions, 49 deletions
diff --git a/reproduce/software/config/checksums.conf b/reproduce/software/config/checksums.conf index e23df9f..2da488b 100644 --- a/reproduce/software/config/checksums.conf +++ b/reproduce/software/config/checksums.conf @@ -38,7 +38,7 @@ libiconv-checksum = 365dac0b34b4255a0066e8033a8b3db4bdb94b9b57a9dca17ebf2d779139 libtool-checksum = a6eef35f3cbccf2c9e2667f44a476ebc80ab888725eb768e91a3a6c33b8c931afc46eb23efaee76c8696d3e4eed74ab1c71157bcb924f38ee912c8a90a6521a4 libunistring-checksum = 01dcab6e05ea4c33572bf96cc0558bcffbfc0e62fc86410cef06c1597a0073d5750525fe2dee4fdb39c9bd704557fcbab864f9645958108a2e07950bc539fe54 libxml2-checksum = cb7784ba4e72e942614e12e4f83f4ceb275f3d738b30e3b5c1f25edf8e9fa6789e854685974eed95b362049dbf6c8e7357e0327d64c681ed390534ac154e6810 -lzip-checksum = e3331bbf0166541332182a9a28c2e08f522735ef668a06dfa26055251d5142a09227d97e6ae50b38c0b8805479a307a9e55c81b120d5befad2fde44676261843 +lzip-checksum = e2e229899002072322a5bf7fb7ef37ff7cc2d0ded7d6525679ac29cec5c1534de89f76bc01e15c3d76584099957d596b9e5b32d3f9cbfc6bc8d6370fc67d7d96 m4-checksum = a92cad4441b3fd7c033837389ca3499494523d364a5fda043d92c517051510f1758b3b837f0477f42d2258a179ab79a4993e5d1694ef2673db6d96d1faff84fe make-checksum = ddf0fdcb9ee1b182ef294c5da70c1275288c99bef60e63a25c0abed2ddd44aba1770be4aab1db8cac81e5f624576f2127c5d825a1824e1c7a49df4f16445526b metastore-checksum = b2a5fdde9de5ddc1e6c368d5da1b2e97e4fdbaa138a7be281ccb40a81dd4a9bb1849d36b2d5d3f01205079bace60441f82a7002097ff3a7037340a35b0f1574a @@ -80,7 +80,7 @@ atlas-checksum = bf17306f09f2aa973cb776e2c9eacfb2409ad4d95d19802e1c4e0597d0a099f autoconf-checksum = c25e834251bfc2befe822614caf1c80d7e1314a83e7173304abc235fd15a958b8db9fbc801e8ad98328dfd6d9dbc425bfbbefec500fa268992ae7bbf4fa5bc35 automake-checksum = 47b0120a59e3e020529a6ce750297d7de1156fd2be38db5d101e50120f11b40c28741ecd5eacf2790a9e25386713dcf7717339cfa5d7943d0dbf47c417383448 bison-checksum = 00d2b37187b93100ec4b220ce2752d12ccf68f9d0d39b380d375d36dd8a22aa1d6e60156918f95e4493f9531c5d42d8fad38fd807307b491c1ca7ca4177823d9 -boost-checksum = 4378e20f18db9f186ac0f38ad98c522526e0fe48a8deb968c41325e3f69e733be3298505e91ea713e79a9d9e741305fa879d289f74e6276e0ec7286f03be87fc +boost-checksum = 2844dddd3357e76909f2f3d008f686949f8b54aed29e1c650e18becd0b50701a273bb3754f1a4e56c0c056693b27c354c9ba54ddbec92599e192c2f6736fe3be cairo-checksum = 9eb27c4cf01c0b8b56f2e15e651f6d4e52c99d0005875546405b64f1132aed12fbf84727273f493d84056a13105e065009d89e94a8bfaf2be2649e232b82377f cdsclient-checksum = 2d7abf0079189b9dd19cb8919061445fd19ea9f7dfd54e8ceee26b743218cf62ab00eba0147abe82d9294223927f04b4cc3328620dfc9184a7049f8d515b29e4 cfitsio-checksum = c0502699e266928dd25abe57730dc4b357ccc9023789fe745324ae01aa688516aceaf37321ee578f0430111d9718f0fec0dc5b54c07f935529560f00b32ce1e3 @@ -88,7 +88,7 @@ cmake-checksum = f09440681e0c414f5ca669f3aeba6666d09e0642f30a2e12c3199e7fb3da95a eigen-checksum = 34cf600914cce719d61511577ef9cd26fbdcb7a6fad1d0ab8396f98b887fac6a5577d3967e84a8f56225cc50de38f3b91f34f447d14312028383e32b34ea1972 expat-checksum = 514ff2ef3c93af0b1715b7a08732db33c13a113c4c72422716a22ee26c09235deed71ec55510cee24c33bcd6b2347602bd71ce70a432d5583fb63765ff9e0e09 fftw-checksum = ab918b742a7c7dcb56390a0a0014f517a6dff9a2e4b4591060deeb2c652bf3c6868aa74559a422a276b853289b4b701bdcbd3d4d8c08943acf29167a7be81a38 -flex-checksum = e9785f3d620a204b7d20222888917dc065c2036cae28667065bf7862dfa1b25235095a12fd04efdbd09bfd17d3452e6b9ef953a8c1137862ff671c97132a082e +flex-checksum = b4ef58d4a1d66b213e2f59df06959decf46d26b253cdc3f51cd26e2e2b505461ef23dafa974dd2005b1f0cafa5a83fe9258baf78004b2fdae6dfc299bc17bfd1 freetype-checksum = 02f0f4211f9cee5b5e46ebe61190482fca5b41bc26be06fcf0d2d717e9fb119229308398c420eeea476fa2511ca2d52948f1a3242efad30ca82ed0b07cd50e3a gdb-checksum = b4161df5adfce3eb51b3b3fc6072b2ef9f612f5e0f95b25bc57382812854836e9d1b24807c68cc8987e37e90112c6d75ffc1de3ea67a9f92858b4ce1af85c479 ghostscript-checksum = acee64fae78771bffa19b0b2bfaba3c345b420f93ceb4fc9df5fb705f785c8ed720fde2aef53546fac6aca2f7366c64c68a6e373a71999a42dc71aadc9aa782f @@ -104,15 +104,17 @@ libffi-checksum = 980ca30a8d76f963fca722432b1fe5af77d7a4e4d2eac5144fbc5374d4c596 libgit2-checksum = 0879c162e2e1dc00eadfbda22cd1f9d3a95b4ec2b653c108983f37c2f695140882de4d50d7cbc04ced247125a4e9fe6df16130e1267891aecdb2411d920db5c6 libjpeg-checksum = 74ea5af3545657d4ac03f8f7933913112cc2d982f0e379d0e5647f1acac21931468e53806297c30ebe180c7bcf84919a0ac20a4195afb03db03060d57904ef6c libnsl-checksum = a3c8f674357674b7ed4b26c05adde607f39be8d6dc9ff715448e1fcc5fc23d11fbb4ce85a6e493b79bdb0bb450dc3ffb1fb480715779f738d7bc016fae91621d +libpaper-checksum = 3bf6ebb0af89931d2f72ea4a09a7fa958b2facda5f238983ec7bac39652e08614b33f0de3af74a03457b2a4203eee4950bf18a4b726e79aa64093ace6a1fb0bc libpng-checksum = 59e8c1059013497ae616a14c3abbe239322d3873c6ded0912403fc62fb260561768230b6ab997e2cccc3b868c09f539fd13635616b9fa0dd6279a3f63ec7e074 libtiff-checksum = d213e5db09fd56b8977b187c5a756f60d6e3e998be172550c2892dbdb4b2a8e8c750202bc863fe27d0d1c577ab9de1710d15e9f6ed665aadbfd857525a81eea8 -libtirpc-checksum = 392f391f9fc1bd68d81dc44e4058831a64b32790b5c8c37338b0ab416fad2ae4d16389e632596734dba09780347918cc65c6f134e0c1afd09e81ec250785ed23 +libtirpc-checksum = bcb6b5c062c1301aa1246ec93ae0a5c1d221b8421126d020863517cb814b43ed038fb6c0c2faf4e68ff133b69abefe4f4d42bfc870671da6c27ca941a30b155a missfits-checksum = 32727f5eb30573a1cedacb8900e2536867e4815059eee32e64e3db65be9291b8a91b9f45b2c9f3cf6fc2a8cc448012ea3d502bdd9dee516008e17d5086aee795 netpbm-checksum = 064720f8a9d0a502488e1af4daecdbf3936910996507ca6f311073a0ad842346692a148eb1ddf7b717f7b108f60500246cb4b83f4d3665f5fc285a84ae1d63d6 -openblas-checksum = 91b3074eb922453bf843158b4281cde65db9e8bbdd7590e75e9e6cdcb486157f7973f2936f327bb3eb4f1702ce0ba51ae6729d8d4baf2d986c50771e8f696df0 +openblas-checksum = 64a5f983b2f6e02cdb6e0f14433498cc5daa1ccfb49246f7a2dcd38f9982fa608f2abea069fe0e35012af8c1441c43d1f6418eaccd40795f5002fed1c36ce05d openmpi-checksum = 760716974cb6b25ad820184622e1ee7926bc6fda87db6b574f76792bc1ca99522e52195866c14b7cb2df5a4981efdaf9f71d2c5533cc0e8e45c2c4b3b74cbacc openssh-checksum = e280fa2d56f550efd37c5d2477670326261aa8b94d991f9eb17aad90e0c6c9c939efa90fe87d33260d0f709485cb05c379f0fd1bd44fc0d5190298b6398c9982 patch-checksum = 75d4e1544484da12185418cd4a1571994398140a91ac606fa08dd067004187dad77d1413f0eb3319b3fe4df076714615c98b29df06af052bb65960fa8b0c86bf +pcre-checksum = abac4c4f9df9e61d7d7761a9c50843882611752e1df0842a54318f358c28f5953025eba2d78997d21ee690756b56cc9f1c04a5ed591dd60654cc78ba16d9ecfb pixman-checksum = 1b0205dbe9d9185c68813ce577a889f3c83e83fbd9955c3a72d411c3b476e6be93fc246b5b6ef4ee17e2bb8eb6fb5559e01dff7feb6a6c4c6314f980e960d690 python-checksum = c25a72ad792f7c1b4c2f79faebbe9608d04b04b2fe58ab804cb4732cdaa75ea93d175f5e52b38e91cb6ae0559ea6b645d802c8b6a869584e8bb9b5018367ce3d R-checksum = 17513e9f4dd27c61c11f7aa45227aeeeefb375bf5d4e193b471724f379a1b2da33e127cbe91aa175cbbbb048b892047e2f610280585c8159242a6c94790b07f9 diff --git a/reproduce/software/config/software_acknowledge_context.sh b/reproduce/software/config/software_acknowledge_context.sh new file mode 100755 index 0000000..b0ede85 --- /dev/null +++ b/reproduce/software/config/software_acknowledge_context.sh @@ -0,0 +1,112 @@ +#!/usr/bin/env sh + +# Surrounding text for software acknowledgement and citation. The list of +# names, versions and citations of the software are written by an automatic +# script. However, through this file, users have the option to specify the +# text surrounding those lists. +# +# We recommend to leave these values untouched at first, after building +# your PDF, you can see how they surround the list of software you used in +# your project to make a smoothly readable English text. Afterwards, please +# feel free to modify them as you wish. +# +# Copyright (C) 2020 Boud Roukema <boud@cosmo.torun.pl> +# Copyright (C) 2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# +# This script is free software: you can redistribute it and/or modify it +# under the terms of the GNU General Public License as published by the +# Free Software Foundation, either version 3 of the License, or (at your +# option) any later version. +# +# This script is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General +# Public License for more details. +# +# A copy of the GNU General Public License is available at +# <http://www.gnu.org/licenses/>. + +# WARNING: +# In contrast to most configure files in maneage, this configure file is +# technically a shell script, to be called by 'configure.sh', so the +# variables defined here must follow 'shell' syntax, not 'make' syntax. + +# These variables will be exported to the 'configure.sh' script - so +# descriptive, unique names should be used, to reduce the chance of +# conflicts between identically named variables. + +# COMMENT: +# Sentences have a tendancy to become very long. To avoid making the +# variable values too long (and thus making this file hard to read), one +# method is to break the sentence into smaller components and build the +# full sentence gradually, similar to what we have done with 'str' in the +# examples below. Each time, the value of 'str' is re-written by appending +# its previous value with the rest of the sentence. + +# COMMENT: +# As of 2020-06-10, the general issue of how to best cite software within +# maneage, especially a full list of software in the Acknowledgments +# section, remains wide open. See +# https://savannah.nongnu.org/task/index.php?15318 for some technical +# aspects of software citation. + + + + + +# Add your definitions of the LaTeX text here. +# +# To override a default but generate no text, use a string of non-zero +# length such as "{}" that will have only minor effects in LaTeX. + +# An introduction to the software acknowledgement. +thank_software_introduce= + +# The text to be used before listing C/C++ programs and libraries. +thank_progs_libs= + +# The text to be used before listing Python modules. +thank_python= + +# The text to be used before listing LaTeX packages. +thank_latex= + +# Concluding remarks. +thank_software_conclude= + + + + + +# Defaults +# -------- +# +# These are the default values which are only written into the variable if +# you don't specify a value above +if [ "x$thank_software_introduce" = "x" ]; then + thank_software_introduce="" +fi + +if [ "x$thank_progs_libs" = "x" ]; then + str="This research was done with the following free software" + str="$str programs and libraries:" + thank_progs_libs="$str" +fi + +if [ "x$thank_python" = "x" ]; then + thank_python="Within Python, the following modules were used:" +fi + +if [ "x$thank_latex" = "x" ]; then + str="The \LaTeX{} source of the paper was compiled to make the" + str="$str PDF using the following packages:" + thank_latex="$str" +fi + +if [ "x${thank_software_conclude}" = "x" ]; then + str="We are very grateful to all their creators for freely " + str="$str providing this necessary infrastructure. This research " + str="$str (and many other projects) would not be possible without " + str="$str them." + thank_software_conclude="$str" +fi diff --git a/reproduce/software/config/urls.conf b/reproduce/software/config/urls.conf new file mode 100644 index 0000000..dc5a9d8 --- /dev/null +++ b/reproduce/software/config/urls.conf @@ -0,0 +1,159 @@ +# Optional URLs of software to use for downloading their source +# +# If un-commented the URLs of this file will be used. Otherwise default +# servers (primarily on 'zenodo.org') will be checked for the tarball. +# +# Copyright (C) 2020 Mohammad Akhlaghi <mohammad@akhlaghi.org> +# Copyright (C) 2020 Raul Infante-Sainz <infantesainz@gmail.com> +# +# Copying and distribution of this file, with or without modification, are +# permitted in any medium without royalty provided the copyright notice and +# this notice are preserved. This file is offered as-is, without any +# warranty. + + + + + +# Basic/low-level programs and libraires (installed in any case) +# -------------------------------------------------------------- +#bash-url = http://akhlaghi.org/maneage-software +#binutils-url = http://ftp.gnu.org/gnu/binutils +#bzip2-url = http://akhlaghi.org/maneage-software +#cert-url = http://akhlaghi.org/maneage-software +#coreutils-url = http://ftp.gnu.org/gnu/coreutils +#curl-url = https://curl.haxx.se/download +#dash-url = http://akhlaghi.org/maneage-software +#diffutils-url = http://ftp.gnu.org/gnu/diffutils +#file-url = ftp://ftp.astron.com/pub/file +#findutils-url = http://ftp.gnu.org/gnu/findutils +#flock-url = http://akhlaghi.org/src +#gawk-url = http://ftp.gnu.org/gnu/gawk +#gcc-url = http://ftp.gnu.org/gnu/gcc/gcc-$(gcc-version) +#gettext-url = https://ftp.gnu.org/gnu/gettext +#git-url = http://mirrors.edge.kernel.org/pub/software/scm/git +#gmp-url = https://gmplib.org/download/gmp +#grep-url = http://ftp.gnu.org/gnu/grep +#gzip-url = http://akhlaghi.org/src +#isl-url = ftp://gcc.gnu.org/pub/gcc/infrastructure +#libbsd-url = http://libbsd.freedesktop.org/releases +#libiconv-url = https://ftp.gnu.org/pub/gnu/libiconv +#libtool-url = http://ftp.gnu.org/gnu/libtool +#libunistring-url = http://ftp.gnu.org/gnu/libunistring +#libxml2-url = ftp://xmlsoft.org/libxml2 +#lzip-url = http://akhlaghi.org/src +#m4-url = http://akhlaghi.org/maneage-software +#make-url = http://akhlaghi.org/src +#metastore-url = http://akhlaghi.org/maneage-software +#mpc-url = http://ftp.gnu.org/gnu/mpc +#mpfr-url = http://www.mpfr.org/mpfr-current +#ncurses-url = http://ftp.gnu.org/gnu/ncurses +#openssl-url = http://www.openssl.org/source +#patchelf-url = http://nixos.org/releases/patchelf/patchelf-$(patchelf-version) +#perl-url = $(shell echo https://www.cpan.org/src/$$(echo $(perl-version) | sed -e's/\./ /g' | awk '{printf("%d.0", $$1)}')) +#pkgconfig-url = http://pkg-config.freedesktop.org/releases +#readline-url = http://ftp.gnu.org/gnu/readline +#sed-url = http://ftp.gnu.org/gnu/sed +#tar-url = http://ftp.gnu.org/gnu/tar +#texinfo-url = http://ftp.gnu.org/gnu/texinfo +#unzip-url = $(shell echo ftp://ftp.info-zip.org/pub/infozip/src/unzip$$(echo $(unzip-version) | sed -e's/\.//').tgz) +#wget-url = http://ftp.gnu.org/gnu/wget +#which-url = http://ftp.gnu.org/gnu/which +#xz-url = http://tukaani.org/xz +#zip-url = $(shell echo ftp://ftp.info-zip.org/pub/infozip/src/zip$$(echo $(zip-version) | sed -e's/\.//').tgz) +#zlib-url = http://www.zlib.net + + + + + +# Optional/high-level programs and libraries +# ------------------------------------------ +# +# These are programs and libraries that are optional, The ones in +# `reproduce/software/config/TARGETS.conf' will be built as +# part of a project. To specify a software there, just remove the +# `-url' suffix from the list below. +#apachelog4cxx-url = http://akhlaghi.org/maneage-software +#apr-url = https://www-us.apache.org/dist/apr +#apr-util-url = https://www-us.apache.org/dist/apr +#astrometrynet-url = http://astrometry.net/downloads +#atlas-url = https://sourceforge.net/projects/math-atlas/files/Stable/$(atlas-version)/atlas$(atlas-version).tar.bz2/download +#autoconf-url = http://akhlaghi.org/maneage-software +#automake-url = http://ftp.gnu.org/gnu/automake +#bison-url = http://ftp.gnu.org/gnu/bison +#boost-url = $(shell vstr=$$(echo $(boost-version) | sed -e's/\./_/g'); echo https://dl.bintray.com/boostorg/release/$(boost-version)/source) +#cairo-url = https://www.cairographics.org/releases +#cdsclient-url = http://cdsarc.u-strasbg.fr/ftp/pub/sw +#cfitsio-url = https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c +#cmake-url = $(shell majv=$$(echo $(cmake-version) | sed -e's/\./ /' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://cmake.org/files/v$$majv/cmake-$(cmake-version).tar.gz) +#eigen-url = http://bitbucket.org/eigen/eigen/get/$(eigen-version).tar.gz +#expat-url = $(shell vstr=$$(echo $(expat-version) | sed -e's/\./_/g'); echo https://github.com/libexpat/libexpat/releases/download/R_$$vstr/expat-$(expat-version).tar.lz) +#fftw-url = ftp://ftp.fftw.org/pub/fftw +#flex-url = https://github.com/westes/flex/files/981163 +#freetype-url = https://download.savannah.gnu.org/releases/freetype +#gdb-url = http://ftp.gnu.org/gnu/gdb +#ghostscript-url = $(shell v=$$(echo $(ghostscript-version) | sed -e's/\.//'); echo https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs$$v) +#gnuastro-url = http://ftp.gnu.org/gnu/gnuastro +#gsl-url = http://ftp.gnu.org/gnu/gsl +#hdf5-url = $(shell majorver=$$(echo $(hdf5-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$$majorver/hdf5-$(hdf5-version)/src) +#healpix-url = http://akhlaghi.org/maneage-software +#help2man-url = http://ftp.gnu.org/gnu/help2man +#imagemagick-url = http://akhlaghi.org/maneage-software +#imfit-url = http://www.mpe.mpg.de/~erwin/resources/imfit +#lapack-url = http://www.netlib.org/lapack +#libffi-url = ftp://sourceware.org/pub/libffi +#libgit2-url = https://github.com/libgit2/libgit2/archive +#libjpeg-url = http://ijg.org/files +#libnsl-url = http://akhlaghi.org/maneage-software +#ibpaper-url=http://ftp.debian.org/debian/pool/main/libp/libpaper/ +#libpng-url = https://download.sourceforge.net/libpng +#libtiff-url = https://download.osgeo.org/libtiff +#libtirpc-url = https://downloads.sourceforge.net/libtirpc +#minizip-url = +#missfits-url = https://www.astromatic.net/download/missfits +#netpbm-url = http://akhlaghi.org/maneage-software +#openblas-url = https://github.com/xianyi/OpenBLAS/archive +#openmpi-url = $(shell majorver=$$(echo $(openmpi-version) | sed -e 's/\./ /g' | awk '{printf("%d.%d", $$1, $$2)}'); echo https://download.open-mpi.org/release/open-mpi/v$$majorver) +#openssh-url = https://artfiles.org/openbsd/OpenSSH/portable +#patch-url = http://ftp.gnu.org/gnu/patch +#pixman-url = https://www.cairographics.org/releases +#python-url = https://www.python.org/ftp/python/$(python-version) +#R-url = $(shell majver=$$(echo $(R-version) | sed -e's/\./ /g' | awk '{print $$1}'); echo https://cran.r-project.org/src/base/R-$$majver) +#rpcsvc-proto-url = https://github.com/thkukuk/rpcsvc-proto/releases/download +#scamp-url = http://akhlaghi.org/maneage-software +#scons-url = https://sourceforge.net/projects/scons/files/scons/$(scons-version)/scons-$(scons-version).tar.gz/download +#sextractor-url = http://akhlaghi.org/maneage-software +#swarp-url = https://www.astromatic.net/download/swarp +#swig-url = https://sourceforge.net/projects/swig/files/swig/swig-$(swig-version) +#tides-url = http://akhlaghi.org/maneage-software +#valgrind-url = https://sourceware.org/pub/valgrind +#wcslib-url = ftp://ftp.atnf.csiro.au/pub/software/wcslib +#xlsxio-url = https://github.com/brechtsanders/xlsxio/archive +#yaml-url = pyyaml.org/download/libyaml + + + + + +# Python packages +# --------------- +# +# Similar to optional programs and libraries above. +# +# IMPORTANT: Python packages are usually distributed on servers like +# 'https://pypi.org'. You can search for your package here and add the link +# to the tarball here for your desired software. The links in PyPi don't +# contain the names of the software, but only have hashes. So we aren't +# including them by default here. But adding them is trivial for a certain +# version. For example if you search "Numpy" and click on the "Download +# files" menu, you can download the source '.zip' file. For version 1.18.5, +# (with full filename of 'numpy-1.18.5.zip') the link will be like this. +# +# numpy-url = https://files.pythonhosted.org/packages/01/1b/d3ddcabd5817be02df0e6ee20d64f77ff6d0d97f83b77f65e98c8a651981/numpy-1.18.5.zip +# +# Hence, if the version changes, the checksum, and its two top host +# directories also change. This is why we aren't putting any URL here by +# default, if you need to add one, simply follow the numpy example above. +# But be sure to send us a link to the tarball so we upload it to Maneage's +# backup servers. diff --git a/reproduce/software/config/versions.conf b/reproduce/software/config/versions.conf index 1a4172a..b395e0f 100644 --- a/reproduce/software/config/versions.conf +++ b/reproduce/software/config/versions.conf @@ -14,6 +14,8 @@ # Basic/low-level programs and libraires (installed in any case) # -------------------------------------------------------------- +# +# CLASS:BASIC (important identifier, don't modify this line) bash-version = 5.0.11 binutils-version = 2.32 coreutils-version = 8.31 @@ -22,6 +24,7 @@ dash-version = 0.5.10.2 diffutils-version = 3.7 file-version = 5.36 findutils-version = 4.7.0 +flock-version = 0.2.3 gawk-version = 5.0.1 gcc-version = 9.2.0 gettext-version = 0.20.2 @@ -35,8 +38,8 @@ libiconv-version = 1.16 libtool-version = 2.4.6 libunistring-version = 0.9.10 libxml2-version = 2.9.9 -lzip-version = 1.20 -m4-version = 1.4.18 +lzip-version = 1.22-rc2 +m4-version = 1.4.18-patched make-version = 4.3 metastore-version = 1.1.2-23-fa9170b mpc-version = 1.1.0 @@ -56,6 +59,14 @@ xz-version = 5.2.4 zip-version = 3.0 zlib-version = 1.2.11 +# Version-dependent build +# ----------------------- +# +# When updating the version of these programs/libraries, please look into +# the build rule first: In one way or another, the version string becomes +# necessary during their build and must be accounted for. +bzip2-version = 1.0.6 + @@ -67,6 +78,8 @@ zlib-version = 1.2.11 # `reproduce/software/config/TARGETS.conf' will be built as # part of a project. To specify a software there, just remove the # `-version' suffix from the list below. +# +# CLASS:HIGHLEVEL (important identifier, don't modify this line.) apachelog4cxx-version = 0.10.0-603-014954db apr-version = 1.7.0 apr-util-version = 1.6.1 @@ -75,7 +88,7 @@ atlas-version = 3.10.3 autoconf-version = 2.69.200-babc automake-version = 1.16.1 bison-version = 3.4.2 -boost-version = 1.71.0 +boost-version = 1.73.0 cairo-version = 1.16.0 cdsclient-version = 3.84 cfitsio-version = 3.47 @@ -83,8 +96,7 @@ cmake-version = 3.17.0 eigen-version = 3.3.7 expat-version = 2.2.9 fftw-version = 3.3.8 -flex-version = 2.6.4 -flock-version = 0.2.3 +flex-version = 2.6.4-91-ga631f5d freetype-version = 2.9 gdb-version = 8.3 ghostscript-version = 9.50 @@ -98,14 +110,16 @@ imfit-version = 1.6.1 libffi-version = 3.2.1 libjpeg-version = v9b libnsl-version = 1.2.0-4a062cf +libpaper-version = 1.1.28 libpng-version = 1.6.37 libtiff-version = 4.0.10 -libtirpc-version = 1.1.4 +libtirpc-version = 1.2.6 missfits-version = 2.8.0 -openblas-version = 0.3.5 +openblas-version = 0.3.10 openmpi-version = 4.0.1 openssh-version = 8.0p1 patch-version = 2.7.6 +pcre-version = 8.44 pixman-version = 0.38.0 python-version = 3.7.4 R-version = 3.6.2 @@ -119,6 +133,29 @@ tides-version = 2.0 xlsxio-version = 0.2.21 yaml-version = 0.2.2 +# Version-dependent build +# ----------------------- +lapack-version = 3.8.0 +libgit2-version = 0.28.2 +wcslib-version = 6.4 + +# Netpbm's questions in the configure steps maybe change with different or +# new versions. +netpbm-version = 10.86.99 + +# Minizip is installed with the same `zlib' tarball, and they have the same +# version. +minizip-version = $(zlib-version) + +# From version 1.2 OpenSSL may not need a manual addition, as described in +# its comments and `https://savannah.nongnu.org/bugs/?58263'. If it doesn't +# cause problems, put it back in the list of "Basic/low-level" tools. +openssl-version = 1.1.1a + +# Version 3.15.0 needs two patches, please check if they are necessary on +# any future release. +valgrind-version = 3.15.0 + @@ -131,6 +168,8 @@ yaml-version = 0.2.2 # IMPORTANT: If you intend to change the version of any of the Python # modules/libraries below, please fix the hash strings of the respective # URL in `reproduce/software/make/python.mk'. +# +# CLASS:PYTHON (important identifier, don't modify this line.) asn1crypto-version = 0.24.0 asteval-version = 0.9.16 astropy-version = 4.0 @@ -151,7 +190,6 @@ flake8-version = 3.7.8 future-version = 0.18.1 galsim-version = 2.2.1 h5py-version = 2.9.0 -healpy-version = installed-with-healpix html5lib-version = 1.0.1 idna-version = 2.8 jeepney-version = 0.4 @@ -184,42 +222,9 @@ soupsieve-version = 1.8 sympy-version = 1.4 uncertainties-version = 3.1.2 urllib3-version = 1.24.1 -virtualenv-version = 16.4.0 webencodings-version = 0.5.1 - - - - -# Special programs and libraries -# ------------------------------ -# -# When updating the version of these libraries, please look into the build -# rule first: In one way or another, the version string becomes necessary -# during their build and must be accounted for. +# Special Python modules: # -# Special notes: -# - `netpbm' questions in the configure steps maybe change with different -# or new versions. - -# Basic/low-level -bzip2-version = 1.0.6 - -# Optional/high-level -lapack-version = 3.8.0 -libgit2-version = 0.28.2 -netpbm-version = 10.86.99 -wcslib-version = 6.4 - -# Minizip is installed with the same `zlib' tarball, and they have the same -# version. -minizip-version = $(zlib-version) - -# From version 1.2 OpenSSL may not need a manual addition, as described in -# its comments and `https://savannah.nongnu.org/bugs/?58263'. If it doesn't -# cause problems, put it back in the list of "Basic/low-level" tools. -openssl-version = 1.1.1a - -# Version 3.15.0 needs two patches, please check if they are necessary on -# any future release. -valgrind-version = 3.15.0 +# Healpy: When any Python module is requested, healpix will also build its +# Python module Healpy. |