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@@ -314,6 +314,7 @@ The main Maneage Branch is a fully working skeleton of a project without much fl To start a new project, the authors will \emph{clone}\footnote{In Git, the ``clone'' operation is the process of copying all the project's files and history from a repository onto the local system.} Maneage, create their own Git branch over the latest commit, and start their project by customizing that branch. Customization in their project branch is done by adding the names of the software they need, references to their input data, adding the analysis commands and commands to generate the visualizations, and write the narrative report which includes the visualizations. Manages contains a file called \inlinecode{README-hacking.md} that has a complete checklist of steps to start a new project and remove demonstration parts. +In order to start using Maneage, there are hands-on tutorials for guiding the reader through research examples and show the workflow in a practical way. This will usually be done in multiple commits in the project's duration (maybe multiple years), thus preserving the project's history: the causes of all choices, the authors and times of each change, failed tests, and etc. Figure \ref{fig:files} shows this directory structure containing the modular plain-text files (classified by context in sub-directories) and some representative files in each directory. @@ -806,6 +807,7 @@ Once the improvements become substantial, new paper(s) will be written to comple %% Acknowledgements \section{Acknowledgments} The authors wish to thank Pedram Ashofteh Ardakani, Zahra Sharbaf and Surena Fatemi for their useful suggestions and feedback on Maneage and this paper and to David Valls-Gabaud, Ignacio Trujillo, Johan Knapen, Roland Bacon for their support. +We also thank Julia Aguilar-Cabello for designing the Maneage logo. Work on the reproducible paper template has been funded by the Japanese Ministry of Education, Culture, Sports, Science, and Technology ({\small MEXT}) scholarship and its Grant-in-Aid for Scientific Research (21244012, 24253003), the European Research Council (ERC) advanced grant 339659-MUSICOS, European Union’s Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant agreement No 721463 to the SUNDIAL ITN, and from the Spanish Ministry of Economy and Competitiveness (MINECO) under grant number AYA2016-76219-P. The reproducible paper template was also supported by European Union’s Horizon 2020 (H2020) research and innovation programme via the RDA EU 4.0 project (ref. GA no. 777388). |