paper-concept.git/reproduce/software/config/gnuastro, branch maneage Paper (Towards Long-term and Archivable Reproducibility) IMPORTANT: software config directly under reproduce/software/config 2020-04-17T00:06:20+00:00 Mohammad Akhlaghi mohammad@akhlaghi.org 2020-04-17T00:06:20+00:00 8eb0892e179b4970a9835d29b5f57dd912ca4464 Until now the software configuration parameters were defined under the `reproduce/software/config/installation/' directory. This was because the configuration parameters of analysis software (for example Gnuastro's configurations) were placed under there too. But this was terribly confusing, because the run-time options of programs falls under the "analysis" phase of the project. With this commit, the Gnuastro configuration files have been moved under the new `reproduce/analysis/config/gnuastro' directory and the software configuration files are directly under `reproduce/software/config'. A clean build was done with this change and it didn't crash, but it may cause crashes in derived projects, so after merging with Maneage, please re-configure your project to see if anything has been missed. Please let us know if there is a problem. 
Until now the software configuration parameters were defined under the
`reproduce/software/config/installation/' directory. This was because the
configuration parameters of analysis software (for example Gnuastro's
configurations) were placed under there too. But this was terribly
confusing, because the run-time options of programs falls under the
"analysis" phase of the project.

With this commit, the Gnuastro configuration files have been moved under
the new `reproduce/analysis/config/gnuastro' directory and the software
configuration files are directly under `reproduce/software/config'. A clean
build was done with this change and it didn't crash, but it may cause
crashes in derived projects, so after merging with Maneage, please
re-configure your project to see if anything has been missed. Please let us
know if there is a problem.
Copyright statements updated to include 2020 2020-01-01T14:25:05+00:00 Mohammad Akhlaghi mohammad@akhlaghi.org 2020-01-01T14:25:05+00:00 044fc66b9679cc4556d7d6c377d881a9d128afe2 Now that its 2020, its necessary to include this year in the copyright statements. 
Now that its 2020, its necessary to include this year in the copyright
statements.
Gnuastro's configuration file updated for version 0.10 2019-08-21T17:28:13+00:00 Mohammad Akhlaghi mohammad@akhlaghi.org 2019-08-21T17:25:12+00:00 54e697a2b8493afcd8dc8598a1ebdbdbc2e6a861 Recently the version of Gnuastro in the template was updated to version 0.10. However, I had forgot to update the `gnuastro.conf' file to fit with the necessary new features of this version. The new general Gnuastro configuration file is now added instead. This bug was reported by Deepak. 
Recently the version of Gnuastro in the template was updated to version
0.10. However, I had forgot to update the `gnuastro.conf' file to fit with
the necessary new features of this version. The new general Gnuastro
configuration file is now added instead.

This bug was reported by Deepak.
New architecture to separate software-building and analysis steps 2019-04-15T01:24:09+00:00 Mohammad Akhlaghi mohammad@akhlaghi.org 2019-04-15T00:47:58+00:00 313b936b502d22b6a2ff43f560dee0bb51fd01d0 Until now, the software building and analysis steps of the pipeline were intertwined. However, these steps (of how to build a software, and how to use it) are logically completely independent. Therefore with this commit, the pipeline now has a new architecture (particularly in the `reproduce' directory) to emphasize this distinction: The `reproduce' directory now has the two `software' and `analysis' subdirectories and the respective parts of the previous architecture have been broken up between these two based on their function. There is also no more `src' directory. The `config' directory for software and analysis is now mixed with the language-specific directories. Also, some of the software versions were also updated after some checks with their webpages. This new architecture will allow much more focused work on each part of the pipeline (to install the software and to run them for an analysis). 
Until now, the software building and analysis steps of the pipeline were
intertwined. However, these steps (of how to build a software, and how to
use it) are logically completely independent.

Therefore with this commit, the pipeline now has a new architecture
(particularly in the `reproduce' directory) to emphasize this distinction:
The `reproduce' directory now has the two `software' and `analysis'
subdirectories and the respective parts of the previous architecture have
been broken up between these two based on their function. There is also no
more `src' directory. The `config' directory for software and analysis is
now mixed with the language-specific directories.

Also, some of the software versions were also updated after some checks
with their webpages.

This new architecture will allow much more focused work on each part of the
pipeline (to install the software and to run them for an analysis).